/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0309.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0309.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0309/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h4oA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175412067 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 4.6153 sec, elapsed time= 4.77376 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 4.67529 sec, elapsed time= 4.85849 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0309 numbered 1 through 76 Created new target T0309 from T0309.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2h4oA expands to /projects/compbio/data/pdb/2h4o.pdb.gz 2h4oA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Read 62 residues and 501 atoms. # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 6.554 sec, elapsed time= 6.77186 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 53 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -31.8548 # GDT_score(maxd=8,maxw=2.9)= -29.8714 # GDT_score(maxd=8,maxw=3.2)= -28.48 # GDT_score(maxd=8,maxw=3.5)= -27.2008 # GDT_score(maxd=10,maxw=3.8)= -29.7385 # GDT_score(maxd=10,maxw=4)= -28.8161 # GDT_score(maxd=10,maxw=4.2)= -27.9816 # GDT_score(maxd=12,maxw=4.3)= -30.6185 # GDT_score(maxd=12,maxw=4.5)= -29.7594 # GDT_score(maxd=12,maxw=4.7)= -28.9735 # GDT_score(maxd=14,maxw=5.2)= -29.6701 # GDT_score(maxd=14,maxw=5.5)= -28.5796 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 7.4900000e+02 rmsd (weighted)= 1.4218815e+01 (unweighted)= 1.9154335e+01 superimposing iter= 1 total_weight= 1.1253499e+03 rmsd (weighted)= 9.2592795e+00 (unweighted)= 1.8879683e+01 superimposing iter= 2 total_weight= 5.8997663e+02 rmsd (weighted)= 8.4344725e+00 (unweighted)= 1.8615094e+01 superimposing iter= 3 total_weight= 5.6084159e+02 rmsd (weighted)= 7.8710626e+00 (unweighted)= 1.8251059e+01 superimposing iter= 4 total_weight= 5.7111466e+02 rmsd (weighted)= 7.2514449e+00 (unweighted)= 1.7825767e+01 superimposing iter= 5 total_weight= 5.7672646e+02 rmsd (weighted)= 6.6312811e+00 (unweighted)= 1.7445611e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2113404202.pdb -s /var/tmp/to_scwrl_2113404202.seq -o /var/tmp/from_scwrl_2113404202.pdb > /var/tmp/scwrl_2113404202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2113404202.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -31.8548 # GDT_score(maxd=8,maxw=2.9)= -30.0063 # GDT_score(maxd=8,maxw=3.2)= -28.5739 # GDT_score(maxd=8,maxw=3.5)= -27.3328 # GDT_score(maxd=10,maxw=3.8)= -29.871 # GDT_score(maxd=10,maxw=4)= -28.9747 # GDT_score(maxd=10,maxw=4.2)= -28.1326 # GDT_score(maxd=12,maxw=4.3)= -30.7637 # GDT_score(maxd=12,maxw=4.5)= -29.8982 # GDT_score(maxd=12,maxw=4.7)= -29.1064 # GDT_score(maxd=14,maxw=5.2)= -29.7595 # GDT_score(maxd=14,maxw=5.5)= -28.6641 # command:# request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_223384575.pdb -s /var/tmp/to_scwrl_223384575.seq -o /var/tmp/from_scwrl_223384575.pdb > /var/tmp/scwrl_223384575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_223384575.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -29.0323 # GDT_score(maxd=8,maxw=2.9)= -27.1506 # GDT_score(maxd=8,maxw=3.2)= -25.8149 # GDT_score(maxd=8,maxw=3.5)= -24.7082 # GDT_score(maxd=10,maxw=3.8)= -27.4014 # GDT_score(maxd=10,maxw=4)= -26.6513 # GDT_score(maxd=10,maxw=4.2)= -25.9199 # GDT_score(maxd=12,maxw=4.3)= -28.7001 # GDT_score(maxd=12,maxw=4.5)= -27.9263 # GDT_score(maxd=12,maxw=4.7)= -27.2184 # GDT_score(maxd=14,maxw=5.2)= -28.1001 # GDT_score(maxd=14,maxw=5.5)= -27.0327 # command:# request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1869418470.pdb -s /var/tmp/to_scwrl_1869418470.seq -o /var/tmp/from_scwrl_1869418470.pdb > /var/tmp/scwrl_1869418470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1869418470.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -31.8548 # GDT_score(maxd=8,maxw=2.9)= -29.8095 # GDT_score(maxd=8,maxw=3.2)= -28.3792 # GDT_score(maxd=8,maxw=3.5)= -27.0771 # GDT_score(maxd=10,maxw=3.8)= -29.6428 # GDT_score(maxd=10,maxw=4)= -28.7301 # GDT_score(maxd=10,maxw=4.2)= -27.8997 # GDT_score(maxd=12,maxw=4.3)= -30.5442 # GDT_score(maxd=12,maxw=4.5)= -29.6885 # GDT_score(maxd=12,maxw=4.7)= -28.8941 # GDT_score(maxd=14,maxw=5.2)= -29.5249 # GDT_score(maxd=14,maxw=5.5)= -28.4423 # command:# request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_368018520.pdb -s /var/tmp/to_scwrl_368018520.seq -o /var/tmp/from_scwrl_368018520.pdb > /var/tmp/scwrl_368018520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368018520.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -29.0323 # GDT_score(maxd=8,maxw=2.9)= -27.6366 # GDT_score(maxd=8,maxw=3.2)= -26.268 # GDT_score(maxd=8,maxw=3.5)= -25.1225 # GDT_score(maxd=10,maxw=3.8)= -27.7847 # GDT_score(maxd=10,maxw=4)= -27.0407 # GDT_score(maxd=10,maxw=4.2)= -26.3572 # GDT_score(maxd=12,maxw=4.3)= -29.038 # GDT_score(maxd=12,maxw=4.5)= -28.2981 # GDT_score(maxd=12,maxw=4.7)= -27.5744 # GDT_score(maxd=14,maxw=5.2)= -28.3436 # GDT_score(maxd=14,maxw=5.5)= -27.3255 # command:# request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_413552546.pdb -s /var/tmp/to_scwrl_413552546.seq -o /var/tmp/from_scwrl_413552546.pdb > /var/tmp/scwrl_413552546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_413552546.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0309.try1-opt2.pdb looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -26.2097 # GDT_score(maxd=8,maxw=2.9)= -24.8129 # GDT_score(maxd=8,maxw=3.2)= -23.8781 # GDT_score(maxd=8,maxw=3.5)= -23.0756 # GDT_score(maxd=10,maxw=3.8)= -25.2897 # GDT_score(maxd=10,maxw=4)= -24.706 # GDT_score(maxd=10,maxw=4.2)= -24.0672 # GDT_score(maxd=12,maxw=4.3)= -26.5822 # GDT_score(maxd=12,maxw=4.5)= -25.9026 # GDT_score(maxd=12,maxw=4.7)= -25.2191 # GDT_score(maxd=14,maxw=5.2)= -26.1483 # GDT_score(maxd=14,maxw=5.5)= -25.1619 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 7.4900000e+02 rmsd (weighted)= 1.4806819e+01 (unweighted)= 1.9031404e+01 superimposing iter= 1 total_weight= 1.2222586e+03 rmsd (weighted)= 9.1488390e+00 (unweighted)= 1.9088397e+01 superimposing iter= 2 total_weight= 6.7844399e+02 rmsd (weighted)= 7.7012234e+00 (unweighted)= 1.9275814e+01 superimposing iter= 3 total_weight= 6.0876498e+02 rmsd (weighted)= 6.8766057e+00 (unweighted)= 1.9495568e+01 superimposing iter= 4 total_weight= 5.9296141e+02 rmsd (weighted)= 6.2368939e+00 (unweighted)= 1.9674464e+01 superimposing iter= 5 total_weight= 6.0961208e+02 rmsd (weighted)= 5.5742087e+00 (unweighted)= 1.9781173e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0309.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.645161 # GDT_score = -20.1613 # GDT_score(maxd=8,maxw=2.9)= -18.941 # GDT_score(maxd=8,maxw=3.2)= -18.3749 # GDT_score(maxd=8,maxw=3.5)= -17.7884 # GDT_score(maxd=10,maxw=3.8)= -19.3811 # GDT_score(maxd=10,maxw=4)= -18.9765 # GDT_score(maxd=10,maxw=4.2)= -18.6105 # GDT_score(maxd=12,maxw=4.3)= -20.5051 # GDT_score(maxd=12,maxw=4.5)= -20.0956 # GDT_score(maxd=12,maxw=4.7)= -19.7209 # GDT_score(maxd=14,maxw=5.2)= -20.6038 # GDT_score(maxd=14,maxw=5.5)= -20.0161 # command:# ReadConformPDB reading from PDB file T0309.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0309)E41.C and (T0309)N43.C only 0.0000000e+00 apart, marking (T0309)N43.C as missing WARNING: atoms too close: (T0309)F42.N and (T0309)G44.N only 0.0000000e+00 apart, marking (T0309)F42.N as missing WARNING: atoms too close: (T0309)F42.CA and (T0309)G44.CA only 0.0000000e+00 apart, marking (T0309)F42.CA as missing WARNING: atoms too close: (T0309)E53.C and (T0309)G66.C only 0.0000000e+00 apart, marking (T0309)G66.C as missing WARNING: atoms too close: (T0309)E54.N and (T0309)D67.N only 0.0000000e+00 apart, marking (T0309)E54.N as missing WARNING: atoms too close: (T0309)E54.CA and (T0309)D67.CA only 0.0000000e+00 apart, marking (T0309)E54.CA as missing # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.290323 # GDT_score = -20.1613 # GDT_score(maxd=8,maxw=2.9)= -20.1734 # GDT_score(maxd=8,maxw=3.2)= -19.4918 # GDT_score(maxd=8,maxw=3.5)= -18.8223 # GDT_score(maxd=10,maxw=3.8)= -19.7307 # GDT_score(maxd=10,maxw=4)= -19.3087 # GDT_score(maxd=10,maxw=4.2)= -18.8753 # GDT_score(maxd=12,maxw=4.3)= -19.8345 # GDT_score(maxd=12,maxw=4.5)= -19.3934 # GDT_score(maxd=12,maxw=4.7)= -18.98 # GDT_score(maxd=14,maxw=5.2)= -18.8471 # GDT_score(maxd=14,maxw=5.5)= -18.259 # command:# ReadConformPDB reading from PDB file T0309.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0309)I9.C and (T0309)V19.C only 0.0000000e+00 apart, marking (T0309)V19.C as missing WARNING: atoms too close: (T0309)N10.N and (T0309)M20.N only 0.0000000e+00 apart, marking (T0309)N10.N as missing WARNING: atoms too close: (T0309)N10.CA and (T0309)M20.CA only 0.0000000e+00 apart, marking (T0309)N10.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)E30.CA as missing # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0309.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0309)D18.C and (T0309)T23.C only 0.0000000e+00 apart, marking (T0309)T23.C as missing WARNING: atoms too close: (T0309)V19.N and (T0309)E24.N only 0.0000000e+00 apart, marking (T0309)V19.N as missing WARNING: atoms too close: (T0309)V19.CA and (T0309)E24.CA only 0.0000000e+00 apart, marking (T0309)V19.CA as missing # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0309.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0309)M17.C and (T0309)E24.C only 0.0000000e+00 apart, marking (T0309)E24.C as missing WARNING: atoms too close: (T0309)D18.N and (T0309)Q25.N only 0.0000000e+00 apart, marking (T0309)D18.N as missing WARNING: atoms too close: (T0309)D18.CA and (T0309)Q25.CA only 0.0000000e+00 apart, marking (T0309)D18.CA as missing WARNING: atoms too close: (T0309)K27.C and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E28.N and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E28.N as missing WARNING: atoms too close: (T0309)E28.CA and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)E28.CA as missing # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt1.gromacs0.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt1.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0309.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera3.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera4.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_287199944.pdb -s /var/tmp/to_scwrl_287199944.seq -o /var/tmp/from_scwrl_287199944.pdb > /var/tmp/scwrl_287199944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_287199944.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1286011788.pdb -s /var/tmp/to_scwrl_1286011788.seq -o /var/tmp/from_scwrl_1286011788.pdb > /var/tmp/scwrl_1286011788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1286011788.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2141781068.pdb -s /var/tmp/to_scwrl_2141781068.seq -o /var/tmp/from_scwrl_2141781068.pdb > /var/tmp/scwrl_2141781068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2141781068.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_765236049.pdb -s /var/tmp/to_scwrl_765236049.seq -o /var/tmp/from_scwrl_765236049.pdb > /var/tmp/scwrl_765236049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_765236049.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2104912385.pdb -s /var/tmp/to_scwrl_2104912385.seq -o /var/tmp/from_scwrl_2104912385.pdb > /var/tmp/scwrl_2104912385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2104912385.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_8251318.pdb -s /var/tmp/to_scwrl_8251318.seq -o /var/tmp/from_scwrl_8251318.pdb > /var/tmp/scwrl_8251318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_8251318.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1229411031.pdb -s /var/tmp/to_scwrl_1229411031.seq -o /var/tmp/from_scwrl_1229411031.pdb > /var/tmp/scwrl_1229411031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1229411031.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_928500454.pdb -s /var/tmp/to_scwrl_928500454.seq -o /var/tmp/from_scwrl_928500454.pdb > /var/tmp/scwrl_928500454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928500454.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_557467906.pdb -s /var/tmp/to_scwrl_557467906.seq -o /var/tmp/from_scwrl_557467906.pdb > /var/tmp/scwrl_557467906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557467906.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_327566143.pdb -s /var/tmp/to_scwrl_327566143.seq -o /var/tmp/from_scwrl_327566143.pdb > /var/tmp/scwrl_327566143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327566143.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1967348823.pdb -s /var/tmp/to_scwrl_1967348823.seq -o /var/tmp/from_scwrl_1967348823.pdb > /var/tmp/scwrl_1967348823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1967348823.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_979850579.pdb -s /var/tmp/to_scwrl_979850579.seq -o /var/tmp/from_scwrl_979850579.pdb > /var/tmp/scwrl_979850579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979850579.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_642717359.pdb -s /var/tmp/to_scwrl_642717359.seq -o /var/tmp/from_scwrl_642717359.pdb > /var/tmp/scwrl_642717359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642717359.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_930120425.pdb -s /var/tmp/to_scwrl_930120425.seq -o /var/tmp/from_scwrl_930120425.pdb > /var/tmp/scwrl_930120425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930120425.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1284936621.pdb -s /var/tmp/to_scwrl_1284936621.seq -o /var/tmp/from_scwrl_1284936621.pdb > /var/tmp/scwrl_1284936621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1284936621.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1877506368.pdb -s /var/tmp/to_scwrl_1877506368.seq -o /var/tmp/from_scwrl_1877506368.pdb > /var/tmp/scwrl_1877506368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877506368.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_793157375.pdb -s /var/tmp/to_scwrl_793157375.seq -o /var/tmp/from_scwrl_793157375.pdb > /var/tmp/scwrl_793157375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_793157375.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_45509790.pdb -s /var/tmp/to_scwrl_45509790.seq -o /var/tmp/from_scwrl_45509790.pdb > /var/tmp/scwrl_45509790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_45509790.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1888310430.pdb -s /var/tmp/to_scwrl_1888310430.seq -o /var/tmp/from_scwrl_1888310430.pdb > /var/tmp/scwrl_1888310430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888310430.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2060028644.pdb -s /var/tmp/to_scwrl_2060028644.seq -o /var/tmp/from_scwrl_2060028644.pdb > /var/tmp/scwrl_2060028644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060028644.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1051873902.pdb -s /var/tmp/to_scwrl_1051873902.seq -o /var/tmp/from_scwrl_1051873902.pdb > /var/tmp/scwrl_1051873902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1051873902.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_772604142.pdb -s /var/tmp/to_scwrl_772604142.seq -o /var/tmp/from_scwrl_772604142.pdb > /var/tmp/scwrl_772604142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772604142.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1266772278.pdb -s /var/tmp/to_scwrl_1266772278.seq -o /var/tmp/from_scwrl_1266772278.pdb > /var/tmp/scwrl_1266772278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1266772278.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2005598514.pdb -s /var/tmp/to_scwrl_2005598514.seq -o /var/tmp/from_scwrl_2005598514.pdb > /var/tmp/scwrl_2005598514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2005598514.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1252235436.pdb -s /var/tmp/to_scwrl_1252235436.seq -o /var/tmp/from_scwrl_1252235436.pdb > /var/tmp/scwrl_1252235436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1252235436.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_158860569.pdb -s /var/tmp/to_scwrl_158860569.seq -o /var/tmp/from_scwrl_158860569.pdb > /var/tmp/scwrl_158860569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_158860569.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1971519069.pdb -s /var/tmp/to_scwrl_1971519069.seq -o /var/tmp/from_scwrl_1971519069.pdb > /var/tmp/scwrl_1971519069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1971519069.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1475620011.pdb -s /var/tmp/to_scwrl_1475620011.seq -o /var/tmp/from_scwrl_1475620011.pdb > /var/tmp/scwrl_1475620011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475620011.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2028279039.pdb -s /var/tmp/to_scwrl_2028279039.seq -o /var/tmp/from_scwrl_2028279039.pdb > /var/tmp/scwrl_2028279039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2028279039.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_192053942.pdb -s /var/tmp/to_scwrl_192053942.seq -o /var/tmp/from_scwrl_192053942.pdb > /var/tmp/scwrl_192053942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_192053942.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1889172557.pdb -s /var/tmp/to_scwrl_1889172557.seq -o /var/tmp/from_scwrl_1889172557.pdb > /var/tmp/scwrl_1889172557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1889172557.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_167995337.pdb -s /var/tmp/to_scwrl_167995337.seq -o /var/tmp/from_scwrl_167995337.pdb > /var/tmp/scwrl_167995337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_167995337.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1478065730.pdb -s /var/tmp/to_scwrl_1478065730.seq -o /var/tmp/from_scwrl_1478065730.pdb > /var/tmp/scwrl_1478065730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478065730.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1883469978.pdb -s /var/tmp/to_scwrl_1883469978.seq -o /var/tmp/from_scwrl_1883469978.pdb > /var/tmp/scwrl_1883469978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1883469978.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_933231386.pdb -s /var/tmp/to_scwrl_933231386.seq -o /var/tmp/from_scwrl_933231386.pdb > /var/tmp/scwrl_933231386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933231386.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1435494468.pdb -s /var/tmp/to_scwrl_1435494468.seq -o /var/tmp/from_scwrl_1435494468.pdb > /var/tmp/scwrl_1435494468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1435494468.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0309)A29.C and (T0309)E30.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.CA only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.CA only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E30.CB only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.CB only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.CB only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E30.CG only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E30.CG only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.CG only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.CG only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E30.CD only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E30.CD only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E30.CD only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.CD only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.CD only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E30.OE1 only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E30.OE1 only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E30.OE1 only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E30.OE1 only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.OE1 only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.OE1 only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E30.OE2 only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E30.OE2 only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E30.OE2 only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E30.OE2 only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E30.OE2 only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.OE2 only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.OE2 only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.O only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E30.C only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CA only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CB only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CG only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CD1 only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CD2 only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CE1 only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CE2 only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.CZ only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.OH only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.O only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y31.C only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)E30.C and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)T32.N only 0.0000000e+00 apart, marking (T0309)T32.N as missing WARNING: atoms too close: (T0309)T32.N and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)T32.CA only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.N and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)T32.CB only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)T32.CG2 only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)T32.OG1 only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.N and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)T32.O only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.O and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.N and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)T32.C only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)T32.N as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.N only 0.0000000e+00 apart, marking (T0309)Y33.N as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CA only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CB only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CG only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CD1 only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CD2 only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CE1 only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CE2 only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.CZ only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.OH only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.O only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)T32.C and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)T32.N and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)Y33.C only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y33.N as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)T32.N as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.N only 0.0000000e+00 apart, marking (T0309)D34.N as missing WARNING: atoms too close: (T0309)D34.N and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.CA only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)D34.N and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.CB only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)D34.N and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.CG only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.OD1 only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.OD2 only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.N and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.O only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.O and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.N and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)T32.C and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)T32.N and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)D34.C only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)D34.N as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y33.N as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)T32.N as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.N only 0.0000000e+00 apart, marking (T0309)F35.N as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CA only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CB only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CG only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CD1 only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CD2 only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CE1 only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CE2 only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.CZ only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.O only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.O and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.N and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.C and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)D34.N and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)T32.C and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)T32.N and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)F35.C only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)F35.N as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)D34.N as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y33.N as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)T32.N as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.N only 0.0000000e+00 apart, marking (T0309)K36.N as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.CA only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.CB only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.CG only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.CD only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.CE only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.NZ only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.O only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.O and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.N and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.C and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.O and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)F35.N and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.C and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)D34.N and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)T32.C and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)T32.N and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)K36.C only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)K36.N as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)F35.N as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)D34.N as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y33.N as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)T32.N as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.N only 0.0000000e+00 apart, marking (T0309)E37.N as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.CA only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.CB only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.CG only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.CD only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.OE1 only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.OE2 only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.O only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)K36.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)F35.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)D34.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)T32.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)T32.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)E37.C only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.C as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.O as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.OE2 as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.OE1 as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.CD as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.CG as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.CB as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.CA as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E37.N as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.C as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.O as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.NZ as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.CE as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.CD as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.CG as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.CB as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.CA as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)K36.N as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.C as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.O as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CZ as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CE2 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CE1 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CD2 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CD1 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CG as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CB as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.CA as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)F35.N as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.OD2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.OD1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.CG as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)D34.N as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.OH as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CZ as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CE2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CE1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CD2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CG as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y33.N as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)T32.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)T32.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)T32.OG1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)T32.CG2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)T32.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)T32.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)T32.N as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.OH as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CZ as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CE2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CE1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CD2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CG as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)Y31.N as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.OE2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.OE1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.CD as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.CG as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)E30.N as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.N only 0.0000000e+00 apart, marking (T0309)I38.N as missing WARNING: atoms too close: (T0309)I38.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.CA only 0.0000000e+00 apart, marking (T0309)I38.CA as missing WARNING: atoms too close: (T0309)I38.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)I38.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.CB only 0.0000000e+00 apart, marking (T0309)I38.CB as missing WARNING: atoms too close: (T0309)I38.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)I38.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)I38.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.CG1 only 0.0000000e+00 apart, marking (T0309)I38.CG1 as missing WARNING: atoms too close: (T0309)I38.CG1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)I38.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)I38.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)I38.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.CG2 only 0.0000000e+00 apart, marking (T0309)I38.CG2 as missing WARNING: atoms too close: (T0309)I38.CG2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)I38.CG1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)I38.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)I38.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)I38.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.CD1 only 0.0000000e+00 apart, marking (T0309)I38.CD1 as missing WARNING: atoms too close: (T0309)I38.CD1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)I38.CG2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)I38.CG1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)I38.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)I38.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)I38.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.O only 0.0000000e+00 apart, marking (T0309)I38.O as missing WARNING: atoms too close: (T0309)I38.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)I38.CD1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)I38.CG2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)I38.CG1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)I38.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)I38.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)I38.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.OE2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.OE1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.CD and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.CG and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E37.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.NZ and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.CE and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.CD and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.CG and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)K36.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CZ and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CE2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CE1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CD2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CD1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CG and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)F35.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.OD2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.OD1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.CG and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)D34.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.OH and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CZ and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CE2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CE1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CD2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CD1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CG and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y33.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)T32.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)T32.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)T32.OG1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)T32.CG2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)T32.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)T32.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)T32.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.OH and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CZ and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CE2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CE1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CD2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CD1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CG and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)Y31.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.O and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.OE2 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.OE1 and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.CD and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.CG and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.CB and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.CA and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)E30.N and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing WARNING: atoms too close: (T0309)A29.C and (T0309)I38.C only 0.0000000e+00 apart, marking (T0309)I38.C as missing # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1891721296.pdb -s /var/tmp/to_scwrl_1891721296.seq -o /var/tmp/from_scwrl_1891721296.pdb > /var/tmp/scwrl_1891721296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891721296.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_15158771.pdb -s /var/tmp/to_scwrl_15158771.seq -o /var/tmp/from_scwrl_15158771.pdb > /var/tmp/scwrl_15158771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_15158771.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_216511275.pdb -s /var/tmp/to_scwrl_216511275.seq -o /var/tmp/from_scwrl_216511275.pdb > /var/tmp/scwrl_216511275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_216511275.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_301705555.pdb -s /var/tmp/to_scwrl_301705555.seq -o /var/tmp/from_scwrl_301705555.pdb > /var/tmp/scwrl_301705555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_301705555.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_342724914.pdb -s /var/tmp/to_scwrl_342724914.seq -o /var/tmp/from_scwrl_342724914.pdb > /var/tmp/scwrl_342724914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342724914.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_36376451.pdb -s /var/tmp/to_scwrl_36376451.seq -o /var/tmp/from_scwrl_36376451.pdb > /var/tmp/scwrl_36376451.log Error: Couldn't open file /var/tmp/from_scwrl_36376451.pdb or /var/tmp/from_scwrl_36376451.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_36376451_b.pdb or decoys//var/tmp/from_scwrl_36376451_b.pdb.gz for input Trying /var/tmp/from_scwrl_36376451_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_36376451_b.pdb or /var/tmp/from_scwrl_36376451_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_36376451_a.pdb or decoys//var/tmp/from_scwrl_36376451_a.pdb.gz for input Trying /var/tmp/from_scwrl_36376451_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_36376451_a.pdb or /var/tmp/from_scwrl_36376451_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_36376451.pdb or /var/tmp/from_scwrl_36376451_b.pdb or /var/tmp/from_scwrl_36376451_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1281556133.pdb -s /var/tmp/to_scwrl_1281556133.seq -o /var/tmp/from_scwrl_1281556133.pdb > /var/tmp/scwrl_1281556133.log Error: Couldn't open file /var/tmp/from_scwrl_1281556133.pdb or /var/tmp/from_scwrl_1281556133.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1281556133_b.pdb or decoys//var/tmp/from_scwrl_1281556133_b.pdb.gz for input Trying /var/tmp/from_scwrl_1281556133_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1281556133_b.pdb or /var/tmp/from_scwrl_1281556133_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1281556133_a.pdb or decoys//var/tmp/from_scwrl_1281556133_a.pdb.gz for input Trying /var/tmp/from_scwrl_1281556133_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1281556133_a.pdb or /var/tmp/from_scwrl_1281556133_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1281556133.pdb or /var/tmp/from_scwrl_1281556133_b.pdb or /var/tmp/from_scwrl_1281556133_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_985442273.pdb -s /var/tmp/to_scwrl_985442273.seq -o /var/tmp/from_scwrl_985442273.pdb > /var/tmp/scwrl_985442273.log Error: Couldn't open file /var/tmp/from_scwrl_985442273.pdb or /var/tmp/from_scwrl_985442273.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_985442273_b.pdb or decoys//var/tmp/from_scwrl_985442273_b.pdb.gz for input Trying /var/tmp/from_scwrl_985442273_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_985442273_b.pdb or /var/tmp/from_scwrl_985442273_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_985442273_a.pdb or decoys//var/tmp/from_scwrl_985442273_a.pdb.gz for input Trying /var/tmp/from_scwrl_985442273_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_985442273_a.pdb or /var/tmp/from_scwrl_985442273_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_985442273.pdb or /var/tmp/from_scwrl_985442273_b.pdb or /var/tmp/from_scwrl_985442273_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_966496876.pdb -s /var/tmp/to_scwrl_966496876.seq -o /var/tmp/from_scwrl_966496876.pdb > /var/tmp/scwrl_966496876.log Error: Couldn't open file /var/tmp/from_scwrl_966496876.pdb or /var/tmp/from_scwrl_966496876.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_966496876_b.pdb or decoys//var/tmp/from_scwrl_966496876_b.pdb.gz for input Trying /var/tmp/from_scwrl_966496876_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_966496876_b.pdb or /var/tmp/from_scwrl_966496876_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_966496876_a.pdb or decoys//var/tmp/from_scwrl_966496876_a.pdb.gz for input Trying /var/tmp/from_scwrl_966496876_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_966496876_a.pdb or /var/tmp/from_scwrl_966496876_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_966496876.pdb or /var/tmp/from_scwrl_966496876_b.pdb or /var/tmp/from_scwrl_966496876_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_419009108.pdb -s /var/tmp/to_scwrl_419009108.seq -o /var/tmp/from_scwrl_419009108.pdb > /var/tmp/scwrl_419009108.log Error: Couldn't open file /var/tmp/from_scwrl_419009108.pdb or /var/tmp/from_scwrl_419009108.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_419009108_b.pdb or decoys//var/tmp/from_scwrl_419009108_b.pdb.gz for input Trying /var/tmp/from_scwrl_419009108_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_419009108_b.pdb or /var/tmp/from_scwrl_419009108_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_419009108_a.pdb or decoys//var/tmp/from_scwrl_419009108_a.pdb.gz for input Trying /var/tmp/from_scwrl_419009108_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_419009108_a.pdb or /var/tmp/from_scwrl_419009108_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_419009108.pdb or /var/tmp/from_scwrl_419009108_b.pdb or /var/tmp/from_scwrl_419009108_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_715464995.pdb -s /var/tmp/to_scwrl_715464995.seq -o /var/tmp/from_scwrl_715464995.pdb > /var/tmp/scwrl_715464995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715464995.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1759654251.pdb -s /var/tmp/to_scwrl_1759654251.seq -o /var/tmp/from_scwrl_1759654251.pdb > /var/tmp/scwrl_1759654251.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1759654251.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_464518899.pdb -s /var/tmp/to_scwrl_464518899.seq -o /var/tmp/from_scwrl_464518899.pdb > /var/tmp/scwrl_464518899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464518899.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_456291778.pdb -s /var/tmp/to_scwrl_456291778.seq -o /var/tmp/from_scwrl_456291778.pdb > /var/tmp/scwrl_456291778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456291778.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1672199248.pdb -s /var/tmp/to_scwrl_1672199248.seq -o /var/tmp/from_scwrl_1672199248.pdb > /var/tmp/scwrl_1672199248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1672199248.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1516392800.pdb -s /var/tmp/to_scwrl_1516392800.seq -o /var/tmp/from_scwrl_1516392800.pdb > /var/tmp/scwrl_1516392800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1516392800.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1228895919.pdb -s /var/tmp/to_scwrl_1228895919.seq -o /var/tmp/from_scwrl_1228895919.pdb > /var/tmp/scwrl_1228895919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228895919.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_791487881.pdb -s /var/tmp/to_scwrl_791487881.seq -o /var/tmp/from_scwrl_791487881.pdb > /var/tmp/scwrl_791487881.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_791487881.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1374507667.pdb -s /var/tmp/to_scwrl_1374507667.seq -o /var/tmp/from_scwrl_1374507667.pdb > /var/tmp/scwrl_1374507667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1374507667.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_333647709.pdb -s /var/tmp/to_scwrl_333647709.seq -o /var/tmp/from_scwrl_333647709.pdb > /var/tmp/scwrl_333647709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_333647709.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_950348450.pdb -s /var/tmp/to_scwrl_950348450.seq -o /var/tmp/from_scwrl_950348450.pdb > /var/tmp/scwrl_950348450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_950348450.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1198543089.pdb -s /var/tmp/to_scwrl_1198543089.seq -o /var/tmp/from_scwrl_1198543089.pdb > /var/tmp/scwrl_1198543089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1198543089.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1809267721.pdb -s /var/tmp/to_scwrl_1809267721.seq -o /var/tmp/from_scwrl_1809267721.pdb > /var/tmp/scwrl_1809267721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1809267721.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_831143843.pdb -s /var/tmp/to_scwrl_831143843.seq -o /var/tmp/from_scwrl_831143843.pdb > /var/tmp/scwrl_831143843.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831143843.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1390597031.pdb -s /var/tmp/to_scwrl_1390597031.seq -o /var/tmp/from_scwrl_1390597031.pdb > /var/tmp/scwrl_1390597031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1390597031.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1550956631.pdb -s /var/tmp/to_scwrl_1550956631.seq -o /var/tmp/from_scwrl_1550956631.pdb > /var/tmp/scwrl_1550956631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550956631.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_999139180.pdb -s /var/tmp/to_scwrl_999139180.seq -o /var/tmp/from_scwrl_999139180.pdb > /var/tmp/scwrl_999139180.log Error: Couldn't open file /var/tmp/from_scwrl_999139180.pdb or /var/tmp/from_scwrl_999139180.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_999139180_b.pdb or decoys//var/tmp/from_scwrl_999139180_b.pdb.gz for input Trying /var/tmp/from_scwrl_999139180_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_999139180_b.pdb or /var/tmp/from_scwrl_999139180_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_999139180_a.pdb or decoys//var/tmp/from_scwrl_999139180_a.pdb.gz for input Trying /var/tmp/from_scwrl_999139180_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_999139180_a.pdb or /var/tmp/from_scwrl_999139180_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_999139180.pdb or /var/tmp/from_scwrl_999139180_b.pdb or /var/tmp/from_scwrl_999139180_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_721179115.pdb -s /var/tmp/to_scwrl_721179115.seq -o /var/tmp/from_scwrl_721179115.pdb > /var/tmp/scwrl_721179115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721179115.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1286942963.pdb -s /var/tmp/to_scwrl_1286942963.seq -o /var/tmp/from_scwrl_1286942963.pdb > /var/tmp/scwrl_1286942963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1286942963.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1932370565.pdb -s /var/tmp/to_scwrl_1932370565.seq -o /var/tmp/from_scwrl_1932370565.pdb > /var/tmp/scwrl_1932370565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1932370565.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_9189937.pdb -s /var/tmp/to_scwrl_9189937.seq -o /var/tmp/from_scwrl_9189937.pdb > /var/tmp/scwrl_9189937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_9189937.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1031180613.pdb -s /var/tmp/to_scwrl_1031180613.seq -o /var/tmp/from_scwrl_1031180613.pdb > /var/tmp/scwrl_1031180613.log Error: Couldn't open file /var/tmp/from_scwrl_1031180613.pdb or /var/tmp/from_scwrl_1031180613.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1031180613_b.pdb or decoys//var/tmp/from_scwrl_1031180613_b.pdb.gz for input Trying /var/tmp/from_scwrl_1031180613_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1031180613_b.pdb or /var/tmp/from_scwrl_1031180613_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1031180613_a.pdb or decoys//var/tmp/from_scwrl_1031180613_a.pdb.gz for input Trying /var/tmp/from_scwrl_1031180613_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1031180613_a.pdb or /var/tmp/from_scwrl_1031180613_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1031180613.pdb or /var/tmp/from_scwrl_1031180613_b.pdb or /var/tmp/from_scwrl_1031180613_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1947529336.pdb -s /var/tmp/to_scwrl_1947529336.seq -o /var/tmp/from_scwrl_1947529336.pdb > /var/tmp/scwrl_1947529336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1947529336.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_225701212.pdb -s /var/tmp/to_scwrl_225701212.seq -o /var/tmp/from_scwrl_225701212.pdb > /var/tmp/scwrl_225701212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225701212.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1332886168.pdb -s /var/tmp/to_scwrl_1332886168.seq -o /var/tmp/from_scwrl_1332886168.pdb > /var/tmp/scwrl_1332886168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332886168.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_142770604.pdb -s /var/tmp/to_scwrl_142770604.seq -o /var/tmp/from_scwrl_142770604.pdb > /var/tmp/scwrl_142770604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_142770604.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_262077664.pdb -s /var/tmp/to_scwrl_262077664.seq -o /var/tmp/from_scwrl_262077664.pdb > /var/tmp/scwrl_262077664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_262077664.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_466958655.pdb -s /var/tmp/to_scwrl_466958655.seq -o /var/tmp/from_scwrl_466958655.pdb > /var/tmp/scwrl_466958655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466958655.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1128212876.pdb -s /var/tmp/to_scwrl_1128212876.seq -o /var/tmp/from_scwrl_1128212876.pdb > /var/tmp/scwrl_1128212876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128212876.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1228574539.pdb -s /var/tmp/to_scwrl_1228574539.seq -o /var/tmp/from_scwrl_1228574539.pdb > /var/tmp/scwrl_1228574539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228574539.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_885967764.pdb -s /var/tmp/to_scwrl_885967764.seq -o /var/tmp/from_scwrl_885967764.pdb > /var/tmp/scwrl_885967764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885967764.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1843677871.pdb -s /var/tmp/to_scwrl_1843677871.seq -o /var/tmp/from_scwrl_1843677871.pdb > /var/tmp/scwrl_1843677871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1843677871.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_840745144.pdb -s /var/tmp/to_scwrl_840745144.seq -o /var/tmp/from_scwrl_840745144.pdb > /var/tmp/scwrl_840745144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_840745144.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1350486662.pdb -s /var/tmp/to_scwrl_1350486662.seq -o /var/tmp/from_scwrl_1350486662.pdb > /var/tmp/scwrl_1350486662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350486662.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_152486002.pdb -s /var/tmp/to_scwrl_152486002.seq -o /var/tmp/from_scwrl_152486002.pdb > /var/tmp/scwrl_152486002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152486002.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_365460746.pdb -s /var/tmp/to_scwrl_365460746.seq -o /var/tmp/from_scwrl_365460746.pdb > /var/tmp/scwrl_365460746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_365460746.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_719395816.pdb -s /var/tmp/to_scwrl_719395816.seq -o /var/tmp/from_scwrl_719395816.pdb > /var/tmp/scwrl_719395816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719395816.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1381381921.pdb -s /var/tmp/to_scwrl_1381381921.seq -o /var/tmp/from_scwrl_1381381921.pdb > /var/tmp/scwrl_1381381921.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1381381921.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1156948626.pdb -s /var/tmp/to_scwrl_1156948626.seq -o /var/tmp/from_scwrl_1156948626.pdb > /var/tmp/scwrl_1156948626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156948626.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2093903483.pdb -s /var/tmp/to_scwrl_2093903483.seq -o /var/tmp/from_scwrl_2093903483.pdb > /var/tmp/scwrl_2093903483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2093903483.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1715029631.pdb -s /var/tmp/to_scwrl_1715029631.seq -o /var/tmp/from_scwrl_1715029631.pdb > /var/tmp/scwrl_1715029631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1715029631.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2107297076.pdb -s /var/tmp/to_scwrl_2107297076.seq -o /var/tmp/from_scwrl_2107297076.pdb > /var/tmp/scwrl_2107297076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107297076.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1144962925.pdb -s /var/tmp/to_scwrl_1144962925.seq -o /var/tmp/from_scwrl_1144962925.pdb > /var/tmp/scwrl_1144962925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144962925.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1376813705.pdb -s /var/tmp/to_scwrl_1376813705.seq -o /var/tmp/from_scwrl_1376813705.pdb > /var/tmp/scwrl_1376813705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1376813705.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_790957272.pdb -s /var/tmp/to_scwrl_790957272.seq -o /var/tmp/from_scwrl_790957272.pdb > /var/tmp/scwrl_790957272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_790957272.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_388076310.pdb -s /var/tmp/to_scwrl_388076310.seq -o /var/tmp/from_scwrl_388076310.pdb > /var/tmp/scwrl_388076310.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_388076310.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_780286690.pdb -s /var/tmp/to_scwrl_780286690.seq -o /var/tmp/from_scwrl_780286690.pdb > /var/tmp/scwrl_780286690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_780286690.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1790096451.pdb -s /var/tmp/to_scwrl_1790096451.seq -o /var/tmp/from_scwrl_1790096451.pdb > /var/tmp/scwrl_1790096451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790096451.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1109255424.pdb -s /var/tmp/to_scwrl_1109255424.seq -o /var/tmp/from_scwrl_1109255424.pdb > /var/tmp/scwrl_1109255424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1109255424.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2067229653.pdb -s /var/tmp/to_scwrl_2067229653.seq -o /var/tmp/from_scwrl_2067229653.pdb > /var/tmp/scwrl_2067229653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067229653.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1574983370.pdb -s /var/tmp/to_scwrl_1574983370.seq -o /var/tmp/from_scwrl_1574983370.pdb > /var/tmp/scwrl_1574983370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1574983370.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1118445361.pdb -s /var/tmp/to_scwrl_1118445361.seq -o /var/tmp/from_scwrl_1118445361.pdb > /var/tmp/scwrl_1118445361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118445361.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_950926620.pdb -s /var/tmp/to_scwrl_950926620.seq -o /var/tmp/from_scwrl_950926620.pdb > /var/tmp/scwrl_950926620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_950926620.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1375029059.pdb -s /var/tmp/to_scwrl_1375029059.seq -o /var/tmp/from_scwrl_1375029059.pdb > /var/tmp/scwrl_1375029059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375029059.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1344146574.pdb -s /var/tmp/to_scwrl_1344146574.seq -o /var/tmp/from_scwrl_1344146574.pdb > /var/tmp/scwrl_1344146574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1344146574.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_136329141.pdb -s /var/tmp/to_scwrl_136329141.seq -o /var/tmp/from_scwrl_136329141.pdb > /var/tmp/scwrl_136329141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136329141.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1517799663.pdb -s /var/tmp/to_scwrl_1517799663.seq -o /var/tmp/from_scwrl_1517799663.pdb > /var/tmp/scwrl_1517799663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1517799663.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1606224238.pdb -s /var/tmp/to_scwrl_1606224238.seq -o /var/tmp/from_scwrl_1606224238.pdb > /var/tmp/scwrl_1606224238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1606224238.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_603287796.pdb -s /var/tmp/to_scwrl_603287796.seq -o /var/tmp/from_scwrl_603287796.pdb > /var/tmp/scwrl_603287796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_603287796.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_498528894.pdb -s /var/tmp/to_scwrl_498528894.seq -o /var/tmp/from_scwrl_498528894.pdb > /var/tmp/scwrl_498528894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498528894.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_687315131.pdb -s /var/tmp/to_scwrl_687315131.seq -o /var/tmp/from_scwrl_687315131.pdb > /var/tmp/scwrl_687315131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_687315131.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1489255559.pdb -s /var/tmp/to_scwrl_1489255559.seq -o /var/tmp/from_scwrl_1489255559.pdb > /var/tmp/scwrl_1489255559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489255559.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_194723118.pdb -s /var/tmp/to_scwrl_194723118.seq -o /var/tmp/from_scwrl_194723118.pdb > /var/tmp/scwrl_194723118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194723118.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1528060275.pdb -s /var/tmp/to_scwrl_1528060275.seq -o /var/tmp/from_scwrl_1528060275.pdb > /var/tmp/scwrl_1528060275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1528060275.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_692258575.pdb -s /var/tmp/to_scwrl_692258575.seq -o /var/tmp/from_scwrl_692258575.pdb > /var/tmp/scwrl_692258575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692258575.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_347209121.pdb -s /var/tmp/to_scwrl_347209121.seq -o /var/tmp/from_scwrl_347209121.pdb > /var/tmp/scwrl_347209121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347209121.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1893521021.pdb -s /var/tmp/to_scwrl_1893521021.seq -o /var/tmp/from_scwrl_1893521021.pdb > /var/tmp/scwrl_1893521021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1893521021.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 14 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1411654390.pdb -s /var/tmp/to_scwrl_1411654390.seq -o /var/tmp/from_scwrl_1411654390.pdb > /var/tmp/scwrl_1411654390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1411654390.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1728591042.pdb -s /var/tmp/to_scwrl_1728591042.seq -o /var/tmp/from_scwrl_1728591042.pdb > /var/tmp/scwrl_1728591042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728591042.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_902986001.pdb -s /var/tmp/to_scwrl_902986001.seq -o /var/tmp/from_scwrl_902986001.pdb > /var/tmp/scwrl_902986001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902986001.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1358074226.pdb -s /var/tmp/to_scwrl_1358074226.seq -o /var/tmp/from_scwrl_1358074226.pdb > /var/tmp/scwrl_1358074226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358074226.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1296137026.pdb -s /var/tmp/to_scwrl_1296137026.seq -o /var/tmp/from_scwrl_1296137026.pdb > /var/tmp/scwrl_1296137026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1296137026.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_862799430.pdb -s /var/tmp/to_scwrl_862799430.seq -o /var/tmp/from_scwrl_862799430.pdb > /var/tmp/scwrl_862799430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862799430.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_355553505.pdb -s /var/tmp/to_scwrl_355553505.seq -o /var/tmp/from_scwrl_355553505.pdb > /var/tmp/scwrl_355553505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355553505.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_525467085.pdb -s /var/tmp/to_scwrl_525467085.seq -o /var/tmp/from_scwrl_525467085.pdb > /var/tmp/scwrl_525467085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_525467085.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1653756702.pdb -s /var/tmp/to_scwrl_1653756702.seq -o /var/tmp/from_scwrl_1653756702.pdb > /var/tmp/scwrl_1653756702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653756702.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_743629815.pdb -s /var/tmp/to_scwrl_743629815.seq -o /var/tmp/from_scwrl_743629815.pdb > /var/tmp/scwrl_743629815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_743629815.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1305753775.pdb -s /var/tmp/to_scwrl_1305753775.seq -o /var/tmp/from_scwrl_1305753775.pdb > /var/tmp/scwrl_1305753775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305753775.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1296369506.pdb -s /var/tmp/to_scwrl_1296369506.seq -o /var/tmp/from_scwrl_1296369506.pdb > /var/tmp/scwrl_1296369506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1296369506.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1852885240.pdb -s /var/tmp/to_scwrl_1852885240.seq -o /var/tmp/from_scwrl_1852885240.pdb > /var/tmp/scwrl_1852885240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1852885240.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1225499781.pdb -s /var/tmp/to_scwrl_1225499781.seq -o /var/tmp/from_scwrl_1225499781.pdb > /var/tmp/scwrl_1225499781.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1225499781.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_723869230.pdb -s /var/tmp/to_scwrl_723869230.seq -o /var/tmp/from_scwrl_723869230.pdb > /var/tmp/scwrl_723869230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_723869230.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_823846955.pdb -s /var/tmp/to_scwrl_823846955.seq -o /var/tmp/from_scwrl_823846955.pdb > /var/tmp/scwrl_823846955.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823846955.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_28942754.pdb -s /var/tmp/to_scwrl_28942754.seq -o /var/tmp/from_scwrl_28942754.pdb > /var/tmp/scwrl_28942754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28942754.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2098898290.pdb -s /var/tmp/to_scwrl_2098898290.seq -o /var/tmp/from_scwrl_2098898290.pdb > /var/tmp/scwrl_2098898290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2098898290.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_20509882.pdb -s /var/tmp/to_scwrl_20509882.seq -o /var/tmp/from_scwrl_20509882.pdb > /var/tmp/scwrl_20509882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_20509882.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_165271895.pdb -s /var/tmp/to_scwrl_165271895.seq -o /var/tmp/from_scwrl_165271895.pdb > /var/tmp/scwrl_165271895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_165271895.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1469214306.pdb -s /var/tmp/to_scwrl_1469214306.seq -o /var/tmp/from_scwrl_1469214306.pdb > /var/tmp/scwrl_1469214306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1469214306.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1626734120.pdb -s /var/tmp/to_scwrl_1626734120.seq -o /var/tmp/from_scwrl_1626734120.pdb > /var/tmp/scwrl_1626734120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1626734120.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_768559692.pdb -s /var/tmp/to_scwrl_768559692.seq -o /var/tmp/from_scwrl_768559692.pdb > /var/tmp/scwrl_768559692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768559692.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1967743200.pdb -s /var/tmp/to_scwrl_1967743200.seq -o /var/tmp/from_scwrl_1967743200.pdb > /var/tmp/scwrl_1967743200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1967743200.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_166565605.pdb -s /var/tmp/to_scwrl_166565605.seq -o /var/tmp/from_scwrl_166565605.pdb > /var/tmp/scwrl_166565605.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_166565605.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_110331604.pdb -s /var/tmp/to_scwrl_110331604.seq -o /var/tmp/from_scwrl_110331604.pdb > /var/tmp/scwrl_110331604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110331604.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_14982672.pdb -s /var/tmp/to_scwrl_14982672.seq -o /var/tmp/from_scwrl_14982672.pdb > /var/tmp/scwrl_14982672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_14982672.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1694625880.pdb -s /var/tmp/to_scwrl_1694625880.seq -o /var/tmp/from_scwrl_1694625880.pdb > /var/tmp/scwrl_1694625880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1694625880.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_802590180.pdb -s /var/tmp/to_scwrl_802590180.seq -o /var/tmp/from_scwrl_802590180.pdb > /var/tmp/scwrl_802590180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_802590180.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_362191793.pdb -s /var/tmp/to_scwrl_362191793.seq -o /var/tmp/from_scwrl_362191793.pdb > /var/tmp/scwrl_362191793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_362191793.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1440663254.pdb -s /var/tmp/to_scwrl_1440663254.seq -o /var/tmp/from_scwrl_1440663254.pdb > /var/tmp/scwrl_1440663254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1440663254.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_66760923.pdb -s /var/tmp/to_scwrl_66760923.seq -o /var/tmp/from_scwrl_66760923.pdb > /var/tmp/scwrl_66760923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66760923.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2090782835.pdb -s /var/tmp/to_scwrl_2090782835.seq -o /var/tmp/from_scwrl_2090782835.pdb > /var/tmp/scwrl_2090782835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2090782835.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_196165608.pdb -s /var/tmp/to_scwrl_196165608.seq -o /var/tmp/from_scwrl_196165608.pdb > /var/tmp/scwrl_196165608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_196165608.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1424835150.pdb -s /var/tmp/to_scwrl_1424835150.seq -o /var/tmp/from_scwrl_1424835150.pdb > /var/tmp/scwrl_1424835150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424835150.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1239436215.pdb -s /var/tmp/to_scwrl_1239436215.seq -o /var/tmp/from_scwrl_1239436215.pdb > /var/tmp/scwrl_1239436215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1239436215.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1058965038.pdb -s /var/tmp/to_scwrl_1058965038.seq -o /var/tmp/from_scwrl_1058965038.pdb > /var/tmp/scwrl_1058965038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058965038.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1780388655.pdb -s /var/tmp/to_scwrl_1780388655.seq -o /var/tmp/from_scwrl_1780388655.pdb > /var/tmp/scwrl_1780388655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780388655.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1764903300.pdb -s /var/tmp/to_scwrl_1764903300.seq -o /var/tmp/from_scwrl_1764903300.pdb > /var/tmp/scwrl_1764903300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1764903300.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_565238093.pdb -s /var/tmp/to_scwrl_565238093.seq -o /var/tmp/from_scwrl_565238093.pdb > /var/tmp/scwrl_565238093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565238093.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_376534824.pdb -s /var/tmp/to_scwrl_376534824.seq -o /var/tmp/from_scwrl_376534824.pdb > /var/tmp/scwrl_376534824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_376534824.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_923173429.pdb -s /var/tmp/to_scwrl_923173429.seq -o /var/tmp/from_scwrl_923173429.pdb > /var/tmp/scwrl_923173429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923173429.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1861607600.pdb -s /var/tmp/to_scwrl_1861607600.seq -o /var/tmp/from_scwrl_1861607600.pdb > /var/tmp/scwrl_1861607600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861607600.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_81936417.pdb -s /var/tmp/to_scwrl_81936417.seq -o /var/tmp/from_scwrl_81936417.pdb > /var/tmp/scwrl_81936417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_81936417.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1189564.pdb -s /var/tmp/to_scwrl_1189564.seq -o /var/tmp/from_scwrl_1189564.pdb > /var/tmp/scwrl_1189564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189564.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_437993183.pdb -s /var/tmp/to_scwrl_437993183.seq -o /var/tmp/from_scwrl_437993183.pdb > /var/tmp/scwrl_437993183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437993183.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_905783372.pdb -s /var/tmp/to_scwrl_905783372.seq -o /var/tmp/from_scwrl_905783372.pdb > /var/tmp/scwrl_905783372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_905783372.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_30132318.pdb -s /var/tmp/to_scwrl_30132318.seq -o /var/tmp/from_scwrl_30132318.pdb > /var/tmp/scwrl_30132318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30132318.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_389407826.pdb -s /var/tmp/to_scwrl_389407826.seq -o /var/tmp/from_scwrl_389407826.pdb > /var/tmp/scwrl_389407826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389407826.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_926293255.pdb -s /var/tmp/to_scwrl_926293255.seq -o /var/tmp/from_scwrl_926293255.pdb > /var/tmp/scwrl_926293255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_926293255.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_195404214.pdb -s /var/tmp/to_scwrl_195404214.seq -o /var/tmp/from_scwrl_195404214.pdb > /var/tmp/scwrl_195404214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_195404214.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1858622133.pdb -s /var/tmp/to_scwrl_1858622133.seq -o /var/tmp/from_scwrl_1858622133.pdb > /var/tmp/scwrl_1858622133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1858622133.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_405543728.pdb -s /var/tmp/to_scwrl_405543728.seq -o /var/tmp/from_scwrl_405543728.pdb > /var/tmp/scwrl_405543728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_405543728.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_963963906.pdb -s /var/tmp/to_scwrl_963963906.seq -o /var/tmp/from_scwrl_963963906.pdb > /var/tmp/scwrl_963963906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963963906.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1678881686.pdb -s /var/tmp/to_scwrl_1678881686.seq -o /var/tmp/from_scwrl_1678881686.pdb > /var/tmp/scwrl_1678881686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1678881686.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 13 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_572109333.pdb -s /var/tmp/to_scwrl_572109333.seq -o /var/tmp/from_scwrl_572109333.pdb > /var/tmp/scwrl_572109333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_572109333.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1074295509.pdb -s /var/tmp/to_scwrl_1074295509.seq -o /var/tmp/from_scwrl_1074295509.pdb > /var/tmp/scwrl_1074295509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074295509.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1693864358.pdb -s /var/tmp/to_scwrl_1693864358.seq -o /var/tmp/from_scwrl_1693864358.pdb > /var/tmp/scwrl_1693864358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1693864358.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_119251566.pdb -s /var/tmp/to_scwrl_119251566.seq -o /var/tmp/from_scwrl_119251566.pdb > /var/tmp/scwrl_119251566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_119251566.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1876885689.pdb -s /var/tmp/to_scwrl_1876885689.seq -o /var/tmp/from_scwrl_1876885689.pdb > /var/tmp/scwrl_1876885689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1876885689.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2056056151.pdb -s /var/tmp/to_scwrl_2056056151.seq -o /var/tmp/from_scwrl_2056056151.pdb > /var/tmp/scwrl_2056056151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2056056151.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1559914820.pdb -s /var/tmp/to_scwrl_1559914820.seq -o /var/tmp/from_scwrl_1559914820.pdb > /var/tmp/scwrl_1559914820.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559914820.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1943646613.pdb -s /var/tmp/to_scwrl_1943646613.seq -o /var/tmp/from_scwrl_1943646613.pdb > /var/tmp/scwrl_1943646613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943646613.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1999355340.pdb -s /var/tmp/to_scwrl_1999355340.seq -o /var/tmp/from_scwrl_1999355340.pdb > /var/tmp/scwrl_1999355340.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1999355340.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1756080428.pdb -s /var/tmp/to_scwrl_1756080428.seq -o /var/tmp/from_scwrl_1756080428.pdb > /var/tmp/scwrl_1756080428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1756080428.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1220998116.pdb -s /var/tmp/to_scwrl_1220998116.seq -o /var/tmp/from_scwrl_1220998116.pdb > /var/tmp/scwrl_1220998116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1220998116.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1091307908.pdb -s /var/tmp/to_scwrl_1091307908.seq -o /var/tmp/from_scwrl_1091307908.pdb > /var/tmp/scwrl_1091307908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1091307908.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_667561820.pdb -s /var/tmp/to_scwrl_667561820.seq -o /var/tmp/from_scwrl_667561820.pdb > /var/tmp/scwrl_667561820.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_667561820.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_853903125.pdb -s /var/tmp/to_scwrl_853903125.seq -o /var/tmp/from_scwrl_853903125.pdb > /var/tmp/scwrl_853903125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_853903125.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_708727562.pdb -s /var/tmp/to_scwrl_708727562.seq -o /var/tmp/from_scwrl_708727562.pdb > /var/tmp/scwrl_708727562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708727562.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1232799912.pdb -s /var/tmp/to_scwrl_1232799912.seq -o /var/tmp/from_scwrl_1232799912.pdb > /var/tmp/scwrl_1232799912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1232799912.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1230437948.pdb -s /var/tmp/to_scwrl_1230437948.seq -o /var/tmp/from_scwrl_1230437948.pdb > /var/tmp/scwrl_1230437948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1230437948.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1631900991.pdb -s /var/tmp/to_scwrl_1631900991.seq -o /var/tmp/from_scwrl_1631900991.pdb > /var/tmp/scwrl_1631900991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631900991.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_946923866.pdb -s /var/tmp/to_scwrl_946923866.seq -o /var/tmp/from_scwrl_946923866.pdb > /var/tmp/scwrl_946923866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946923866.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1312374365.pdb -s /var/tmp/to_scwrl_1312374365.seq -o /var/tmp/from_scwrl_1312374365.pdb > /var/tmp/scwrl_1312374365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312374365.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1633090555.pdb -s /var/tmp/to_scwrl_1633090555.seq -o /var/tmp/from_scwrl_1633090555.pdb > /var/tmp/scwrl_1633090555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1633090555.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1384917049.pdb -s /var/tmp/to_scwrl_1384917049.seq -o /var/tmp/from_scwrl_1384917049.pdb > /var/tmp/scwrl_1384917049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384917049.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_70674091.pdb -s /var/tmp/to_scwrl_70674091.seq -o /var/tmp/from_scwrl_70674091.pdb > /var/tmp/scwrl_70674091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70674091.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1663222873.pdb -s /var/tmp/to_scwrl_1663222873.seq -o /var/tmp/from_scwrl_1663222873.pdb > /var/tmp/scwrl_1663222873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663222873.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 10 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1774324875.pdb -s /var/tmp/to_scwrl_1774324875.seq -o /var/tmp/from_scwrl_1774324875.pdb > /var/tmp/scwrl_1774324875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1774324875.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_996967346.pdb -s /var/tmp/to_scwrl_996967346.seq -o /var/tmp/from_scwrl_996967346.pdb > /var/tmp/scwrl_996967346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996967346.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1858627087.pdb -s /var/tmp/to_scwrl_1858627087.seq -o /var/tmp/from_scwrl_1858627087.pdb > /var/tmp/scwrl_1858627087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1858627087.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1485463361.pdb -s /var/tmp/to_scwrl_1485463361.seq -o /var/tmp/from_scwrl_1485463361.pdb > /var/tmp/scwrl_1485463361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1485463361.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1402511073.pdb -s /var/tmp/to_scwrl_1402511073.seq -o /var/tmp/from_scwrl_1402511073.pdb > /var/tmp/scwrl_1402511073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1402511073.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_675107346.pdb -s /var/tmp/to_scwrl_675107346.seq -o /var/tmp/from_scwrl_675107346.pdb > /var/tmp/scwrl_675107346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_675107346.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1016861402.pdb -s /var/tmp/to_scwrl_1016861402.seq -o /var/tmp/from_scwrl_1016861402.pdb > /var/tmp/scwrl_1016861402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016861402.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1974620407.pdb -s /var/tmp/to_scwrl_1974620407.seq -o /var/tmp/from_scwrl_1974620407.pdb > /var/tmp/scwrl_1974620407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974620407.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1749402856.pdb -s /var/tmp/to_scwrl_1749402856.seq -o /var/tmp/from_scwrl_1749402856.pdb > /var/tmp/scwrl_1749402856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749402856.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_563242113.pdb -s /var/tmp/to_scwrl_563242113.seq -o /var/tmp/from_scwrl_563242113.pdb > /var/tmp/scwrl_563242113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_563242113.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2093871973.pdb -s /var/tmp/to_scwrl_2093871973.seq -o /var/tmp/from_scwrl_2093871973.pdb > /var/tmp/scwrl_2093871973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2093871973.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1478804898.pdb -s /var/tmp/to_scwrl_1478804898.seq -o /var/tmp/from_scwrl_1478804898.pdb > /var/tmp/scwrl_1478804898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478804898.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_471814618.pdb -s /var/tmp/to_scwrl_471814618.seq -o /var/tmp/from_scwrl_471814618.pdb > /var/tmp/scwrl_471814618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_471814618.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1506303147.pdb -s /var/tmp/to_scwrl_1506303147.seq -o /var/tmp/from_scwrl_1506303147.pdb > /var/tmp/scwrl_1506303147.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1506303147.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1274967864.pdb -s /var/tmp/to_scwrl_1274967864.seq -o /var/tmp/from_scwrl_1274967864.pdb > /var/tmp/scwrl_1274967864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274967864.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_323686311.pdb -s /var/tmp/to_scwrl_323686311.seq -o /var/tmp/from_scwrl_323686311.pdb > /var/tmp/scwrl_323686311.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_323686311.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1114899928.pdb -s /var/tmp/to_scwrl_1114899928.seq -o /var/tmp/from_scwrl_1114899928.pdb > /var/tmp/scwrl_1114899928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114899928.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_348482334.pdb -s /var/tmp/to_scwrl_348482334.seq -o /var/tmp/from_scwrl_348482334.pdb > /var/tmp/scwrl_348482334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_348482334.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1414994219.pdb -s /var/tmp/to_scwrl_1414994219.seq -o /var/tmp/from_scwrl_1414994219.pdb > /var/tmp/scwrl_1414994219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414994219.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1782461748.pdb -s /var/tmp/to_scwrl_1782461748.seq -o /var/tmp/from_scwrl_1782461748.pdb > /var/tmp/scwrl_1782461748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782461748.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1202385459.pdb -s /var/tmp/to_scwrl_1202385459.seq -o /var/tmp/from_scwrl_1202385459.pdb > /var/tmp/scwrl_1202385459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202385459.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2123721781.pdb -s /var/tmp/to_scwrl_2123721781.seq -o /var/tmp/from_scwrl_2123721781.pdb > /var/tmp/scwrl_2123721781.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2123721781.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_867778015.pdb -s /var/tmp/to_scwrl_867778015.seq -o /var/tmp/from_scwrl_867778015.pdb > /var/tmp/scwrl_867778015.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_867778015.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_285339761.pdb -s /var/tmp/to_scwrl_285339761.seq -o /var/tmp/from_scwrl_285339761.pdb > /var/tmp/scwrl_285339761.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285339761.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1608139125.pdb -s /var/tmp/to_scwrl_1608139125.seq -o /var/tmp/from_scwrl_1608139125.pdb > /var/tmp/scwrl_1608139125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1608139125.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1814701880.pdb -s /var/tmp/to_scwrl_1814701880.seq -o /var/tmp/from_scwrl_1814701880.pdb > /var/tmp/scwrl_1814701880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814701880.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1597714127.pdb -s /var/tmp/to_scwrl_1597714127.seq -o /var/tmp/from_scwrl_1597714127.pdb > /var/tmp/scwrl_1597714127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1597714127.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1093746033.pdb -s /var/tmp/to_scwrl_1093746033.seq -o /var/tmp/from_scwrl_1093746033.pdb > /var/tmp/scwrl_1093746033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093746033.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1052135283.pdb -s /var/tmp/to_scwrl_1052135283.seq -o /var/tmp/from_scwrl_1052135283.pdb > /var/tmp/scwrl_1052135283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052135283.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1668388218.pdb -s /var/tmp/to_scwrl_1668388218.seq -o /var/tmp/from_scwrl_1668388218.pdb > /var/tmp/scwrl_1668388218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1668388218.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_609485261.pdb -s /var/tmp/to_scwrl_609485261.seq -o /var/tmp/from_scwrl_609485261.pdb > /var/tmp/scwrl_609485261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609485261.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_678976512.pdb -s /var/tmp/to_scwrl_678976512.seq -o /var/tmp/from_scwrl_678976512.pdb > /var/tmp/scwrl_678976512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678976512.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_517871917.pdb -s /var/tmp/to_scwrl_517871917.seq -o /var/tmp/from_scwrl_517871917.pdb > /var/tmp/scwrl_517871917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_517871917.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_320628701.pdb -s /var/tmp/to_scwrl_320628701.seq -o /var/tmp/from_scwrl_320628701.pdb > /var/tmp/scwrl_320628701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_320628701.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_16956226.pdb -s /var/tmp/to_scwrl_16956226.seq -o /var/tmp/from_scwrl_16956226.pdb > /var/tmp/scwrl_16956226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16956226.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1920382990.pdb -s /var/tmp/to_scwrl_1920382990.seq -o /var/tmp/from_scwrl_1920382990.pdb > /var/tmp/scwrl_1920382990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1920382990.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_995736048.pdb -s /var/tmp/to_scwrl_995736048.seq -o /var/tmp/from_scwrl_995736048.pdb > /var/tmp/scwrl_995736048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_995736048.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1033817628.pdb -s /var/tmp/to_scwrl_1033817628.seq -o /var/tmp/from_scwrl_1033817628.pdb > /var/tmp/scwrl_1033817628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033817628.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1747519750.pdb -s /var/tmp/to_scwrl_1747519750.seq -o /var/tmp/from_scwrl_1747519750.pdb > /var/tmp/scwrl_1747519750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1747519750.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_597655257.pdb -s /var/tmp/to_scwrl_597655257.seq -o /var/tmp/from_scwrl_597655257.pdb > /var/tmp/scwrl_597655257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_597655257.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1597059741.pdb -s /var/tmp/to_scwrl_1597059741.seq -o /var/tmp/from_scwrl_1597059741.pdb > /var/tmp/scwrl_1597059741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1597059741.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1693908077.pdb -s /var/tmp/to_scwrl_1693908077.seq -o /var/tmp/from_scwrl_1693908077.pdb > /var/tmp/scwrl_1693908077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1693908077.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2076460155.pdb -s /var/tmp/to_scwrl_2076460155.seq -o /var/tmp/from_scwrl_2076460155.pdb > /var/tmp/scwrl_2076460155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2076460155.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2068874359.pdb -s /var/tmp/to_scwrl_2068874359.seq -o /var/tmp/from_scwrl_2068874359.pdb > /var/tmp/scwrl_2068874359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2068874359.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1052727578.pdb -s /var/tmp/to_scwrl_1052727578.seq -o /var/tmp/from_scwrl_1052727578.pdb > /var/tmp/scwrl_1052727578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052727578.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1203944373.pdb -s /var/tmp/to_scwrl_1203944373.seq -o /var/tmp/from_scwrl_1203944373.pdb > /var/tmp/scwrl_1203944373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1203944373.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_245077023.pdb -s /var/tmp/to_scwrl_245077023.seq -o /var/tmp/from_scwrl_245077023.pdb > /var/tmp/scwrl_245077023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_245077023.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_20143859.pdb -s /var/tmp/to_scwrl_20143859.seq -o /var/tmp/from_scwrl_20143859.pdb > /var/tmp/scwrl_20143859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_20143859.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1552426707.pdb -s /var/tmp/to_scwrl_1552426707.seq -o /var/tmp/from_scwrl_1552426707.pdb > /var/tmp/scwrl_1552426707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552426707.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1660071242.pdb -s /var/tmp/to_scwrl_1660071242.seq -o /var/tmp/from_scwrl_1660071242.pdb > /var/tmp/scwrl_1660071242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660071242.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1802605608.pdb -s /var/tmp/to_scwrl_1802605608.seq -o /var/tmp/from_scwrl_1802605608.pdb > /var/tmp/scwrl_1802605608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802605608.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_607328520.pdb -s /var/tmp/to_scwrl_607328520.seq -o /var/tmp/from_scwrl_607328520.pdb > /var/tmp/scwrl_607328520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_607328520.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1636309376.pdb -s /var/tmp/to_scwrl_1636309376.seq -o /var/tmp/from_scwrl_1636309376.pdb > /var/tmp/scwrl_1636309376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1636309376.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_522899976.pdb -s /var/tmp/to_scwrl_522899976.seq -o /var/tmp/from_scwrl_522899976.pdb > /var/tmp/scwrl_522899976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_522899976.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_892668282.pdb -s /var/tmp/to_scwrl_892668282.seq -o /var/tmp/from_scwrl_892668282.pdb > /var/tmp/scwrl_892668282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_892668282.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1096964855.pdb -s /var/tmp/to_scwrl_1096964855.seq -o /var/tmp/from_scwrl_1096964855.pdb > /var/tmp/scwrl_1096964855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1096964855.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_190118209.pdb -s /var/tmp/to_scwrl_190118209.seq -o /var/tmp/from_scwrl_190118209.pdb > /var/tmp/scwrl_190118209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190118209.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_342898762.pdb -s /var/tmp/to_scwrl_342898762.seq -o /var/tmp/from_scwrl_342898762.pdb > /var/tmp/scwrl_342898762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342898762.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_43227242.pdb -s /var/tmp/to_scwrl_43227242.seq -o /var/tmp/from_scwrl_43227242.pdb > /var/tmp/scwrl_43227242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43227242.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1242253492.pdb -s /var/tmp/to_scwrl_1242253492.seq -o /var/tmp/from_scwrl_1242253492.pdb > /var/tmp/scwrl_1242253492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242253492.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0309 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_2011286980.pdb -s /var/tmp/to_scwrl_2011286980.seq -o /var/tmp/from_scwrl_2011286980.pdb > /var/tmp/scwrl_2011286980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011286980.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 16.3915 sec, elapsed time= 79.1906 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 252.883 shub_TS1 costs 0 real_cost = 255.035 panther2_TS1-scwrl costs 0 real_cost = 276.126 panther2_TS1 costs 0 real_cost = 287.821 nFOLD_TS5-scwrl costs 0 real_cost = 291.489 nFOLD_TS5 costs 0 real_cost = 309.719 nFOLD_TS4-scwrl costs 0 real_cost = 288.476 nFOLD_TS4 costs 0 real_cost = 307.719 nFOLD_TS3-scwrl costs 0 real_cost = 293.276 nFOLD_TS3 costs 0 real_cost = 311.519 nFOLD_TS2-scwrl costs 0 real_cost = 288.476 nFOLD_TS2 costs 0 real_cost = 307.719 nFOLD_TS1-scwrl costs 0 real_cost = 273.097 nFOLD_TS1 costs 0 real_cost = 315.658 mGen-3D_TS1-scwrl costs 0 real_cost = 271.542 mGen-3D_TS1 costs 0 real_cost = 277.915 keasar-server_TS5-scwrl costs 0 real_cost = 235.785 keasar-server_TS5 costs 0 real_cost = 243.691 keasar-server_TS4-scwrl costs 0 real_cost = 250.285 keasar-server_TS4 costs 0 real_cost = 250.422 keasar-server_TS3-scwrl costs 0 real_cost = 319.212 keasar-server_TS3 costs 0 real_cost = 319.034 keasar-server_TS2-scwrl costs 0 real_cost = 313.537 keasar-server_TS2 costs 0 real_cost = 313.338 keasar-server_TS1-scwrl costs 0 real_cost = 299.687 keasar-server_TS1 costs 0 real_cost = 300.378 karypis.srv_TS5-scwrl costs 0 real_cost = 294.608 karypis.srv_TS5 costs 0 real_cost = 294.543 karypis.srv_TS4-scwrl costs 0 real_cost = 271.555 karypis.srv_TS4 costs 0 real_cost = 270.755 karypis.srv_TS3-scwrl costs 0 real_cost = 296.577 karypis.srv_TS3 costs 0 real_cost = 295.777 karypis.srv_TS2-scwrl costs 0 real_cost = 283.51 karypis.srv_TS2 costs 0 real_cost = 282.401 karypis.srv_TS1-scwrl costs 0 real_cost = 281.55 karypis.srv_TS1 costs 0 real_cost = 281.634 karypis.srv.4_TS5-scwrl costs 0 real_cost = 309.914 karypis.srv.4_TS5 costs 0 real_cost = 309.879 karypis.srv.4_TS4-scwrl costs 0 real_cost = 260.716 karypis.srv.4_TS4 costs 0 real_cost = 260.716 karypis.srv.4_TS3-scwrl costs 0 real_cost = 301.938 karypis.srv.4_TS3 costs 0 real_cost = 300.753 karypis.srv.4_TS2-scwrl costs 0 real_cost = 327.742 karypis.srv.4_TS2 costs 0 real_cost = 327.742 karypis.srv.4_TS1-scwrl costs 0 real_cost = 227.804 karypis.srv.4_TS1 costs 0 real_cost = 227.804 karypis.srv.2_TS5-scwrl costs 0 real_cost = 276.477 karypis.srv.2_TS5 costs 0 real_cost = 276.477 karypis.srv.2_TS4-scwrl costs 0 real_cost = 250.592 karypis.srv.2_TS4 costs 0 real_cost = 250.592 karypis.srv.2_TS3-scwrl costs 0 real_cost = 223.217 karypis.srv.2_TS3 costs 0 real_cost = 223.217 karypis.srv.2_TS2-scwrl costs 0 real_cost = 320.168 karypis.srv.2_TS2 costs 0 real_cost = 320.168 karypis.srv.2_TS1-scwrl costs 0 real_cost = 229.484 karypis.srv.2_TS1 costs 0 real_cost = 229.484 forecast-s_AL5-scwrl costs 0 real_cost = 375.899 forecast-s_AL5 costs 0 real_cost = 375.899 forecast-s_AL4-scwrl costs 0 real_cost = 319.284 forecast-s_AL4 costs 0 real_cost = 372.442 forecast-s_AL3-scwrl costs 0 real_cost = 333.345 forecast-s_AL3 costs 0 real_cost = 388.576 forecast-s_AL2-scwrl costs 0 real_cost = 376.033 forecast-s_AL2 costs 0 real_cost = 376.033 forecast-s_AL1-scwrl costs 0 real_cost = 265.457 forecast-s_AL1 costs 0 real_cost = 321.081 beautshotbase_TS1-scwrl costs 0 real_cost = 232.064 beautshotbase_TS1 costs 0 real_cost = 244.915 beautshot_TS1-scwrl costs 0 real_cost = 245.925 beautshot_TS1 costs 0 real_cost = 249.111 Zhang-Server_TS5-scwrl costs 0 real_cost = 250.427 Zhang-Server_TS5 costs 0 real_cost = 255.315 Zhang-Server_TS4-scwrl costs 0 real_cost = 276.326 Zhang-Server_TS4 costs 0 real_cost = 278.245 Zhang-Server_TS3-scwrl costs 0 real_cost = 240.62 Zhang-Server_TS3 costs 0 real_cost = 245.817 Zhang-Server_TS2-scwrl costs 0 real_cost = 254.469 Zhang-Server_TS2 costs 0 real_cost = 251.079 Zhang-Server_TS1-scwrl costs 0 real_cost = 255.886 Zhang-Server_TS1 costs 0 real_cost = 250.09 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 306.236 UNI-EID_sfst_AL5 costs 0 real_cost = 335.918 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 275.371 UNI-EID_sfst_AL4 costs 0 real_cost = 301.824 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 349.334 UNI-EID_sfst_AL3 costs 0 real_cost = 352.536 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 364.374 UNI-EID_sfst_AL2 costs 0 real_cost = 369.987 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 348.904 UNI-EID_sfst_AL1 costs 0 real_cost = 355.457 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 339.277 UNI-EID_expm_TS1 costs 0 real_cost = 348.528 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 307.699 UNI-EID_bnmx_TS5 costs 0 real_cost = 369.884 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 328.974 UNI-EID_bnmx_TS4 costs 0 real_cost = 369.252 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 322.274 UNI-EID_bnmx_TS3 costs 0 real_cost = 378.345 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 319.676 UNI-EID_bnmx_TS2 costs 0 real_cost = 371.837 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 306.461 UNI-EID_bnmx_TS1 costs 0 real_cost = 340.634 SPARKS2_TS5-scwrl costs 0 real_cost = 249.512 SPARKS2_TS5 costs 0 real_cost = 237.301 SPARKS2_TS4-scwrl costs 0 real_cost = 250.925 SPARKS2_TS4 costs 0 real_cost = 247.882 SPARKS2_TS3-scwrl costs 0 real_cost = 210.012 SPARKS2_TS3 costs 0 real_cost = 217.542 SPARKS2_TS2-scwrl costs 0 real_cost = 279.427 SPARKS2_TS2 costs 0 real_cost = 277.568 SPARKS2_TS1-scwrl costs 0 real_cost = 251.076 SPARKS2_TS1 costs 0 real_cost = 253.431 SP4_TS5-scwrl costs 0 real_cost = 221.592 SP4_TS5 costs 0 real_cost = 218.819 SP4_TS4-scwrl costs 0 real_cost = 328.672 SP4_TS4 costs 0 real_cost = 328.339 SP4_TS3-scwrl costs 0 real_cost = 294.587 SP4_TS3 costs 0 real_cost = 294.233 SP4_TS2-scwrl costs 0 real_cost = 216.609 SP4_TS2 costs 0 real_cost = 208.047 SP4_TS1-scwrl costs 0 real_cost = 293.629 SP4_TS1 costs 0 real_cost = 294.217 SP3_TS5-scwrl costs 0 real_cost = 253.614 SP3_TS5 costs 0 real_cost = 269.546 SP3_TS4-scwrl costs 0 real_cost = 259.741 SP3_TS4 costs 0 real_cost = 258.172 SP3_TS3-scwrl costs 0 real_cost = 330.072 SP3_TS3 costs 0 real_cost = 329.971 SP3_TS2-scwrl costs 0 real_cost = 314.852 SP3_TS2 costs 0 real_cost = 314.951 SP3_TS1-scwrl costs 0 real_cost = 287.692 SP3_TS1 costs 0 real_cost = 296.714 SAM_T06_server_TS5-scwrl costs 0 real_cost = 245.743 SAM_T06_server_TS5 costs 0 real_cost = 243.572 SAM_T06_server_TS4-scwrl costs 0 real_cost = 337.635 SAM_T06_server_TS4 costs 0 real_cost = 341.362 SAM_T06_server_TS3-scwrl costs 0 real_cost = 340.566 SAM_T06_server_TS3 costs 0 real_cost = 341.819 SAM_T06_server_TS2-scwrl costs 0 real_cost = 335.915 SAM_T06_server_TS2 costs 0 real_cost = 333.07 SAM_T06_server_TS1-scwrl costs 0 real_cost = 250.166 SAM_T06_server_TS1 costs 0 real_cost = 250.092 SAM-T99_AL1-scwrl costs 0 real_cost = 412.193 SAM-T99_AL1 costs 0 real_cost = 423.305 SAM-T02_AL5-scwrl costs 0 real_cost = 400.496 SAM-T02_AL5 costs 0 real_cost = 415.598 SAM-T02_AL4-scwrl costs 0 real_cost = 331.829 SAM-T02_AL4 costs 0 real_cost = 372.838 SAM-T02_AL3-scwrl costs 0 real_cost = 344.744 SAM-T02_AL3 costs 0 real_cost = 366.798 SAM-T02_AL2-scwrl costs 0 real_cost = 372.373 SAM-T02_AL2 costs 0 real_cost = 408.924 SAM-T02_AL1-scwrl costs 0 real_cost = 374.547 SAM-T02_AL1 costs 0 real_cost = 404.918 ROKKY_TS5-scwrl costs 0 real_cost = 245.103 ROKKY_TS5 costs 0 real_cost = 311.87 ROKKY_TS4-scwrl costs 0 real_cost = 243.751 ROKKY_TS4 costs 0 real_cost = 307.166 ROKKY_TS3-scwrl costs 0 real_cost = 245.899 ROKKY_TS3 costs 0 real_cost = 308.744 ROKKY_TS2-scwrl costs 0 real_cost = 261.746 ROKKY_TS2 costs 0 real_cost = 326.976 ROKKY_TS1-scwrl costs 0 real_cost = 251.765 ROKKY_TS1 costs 0 real_cost = 318.102 ROBETTA_TS5-scwrl costs 0 real_cost = 261.735 ROBETTA_TS5 costs 0 real_cost = 264.742 ROBETTA_TS4-scwrl costs 0 real_cost = 275.234 ROBETTA_TS4 costs 0 real_cost = 291.039 ROBETTA_TS3-scwrl costs 0 real_cost = 268.88 ROBETTA_TS3 costs 0 real_cost = 263.695 ROBETTA_TS2-scwrl costs 0 real_cost = 266.318 ROBETTA_TS2 costs 0 real_cost = 263.35 ROBETTA_TS1-scwrl costs 0 real_cost = 268.765 ROBETTA_TS1 costs 0 real_cost = 270.112 RAPTOR_TS5-scwrl costs 0 real_cost = 251.046 RAPTOR_TS5 costs 0 real_cost = 244.094 RAPTOR_TS4-scwrl costs 0 real_cost = 284.634 RAPTOR_TS4 costs 0 real_cost = 286.673 RAPTOR_TS3-scwrl costs 0 real_cost = 290.556 RAPTOR_TS3 costs 0 real_cost = 290.444 RAPTOR_TS2-scwrl costs 0 real_cost = 252.058 RAPTOR_TS2 costs 0 real_cost = 261.615 RAPTOR_TS1-scwrl costs 0 real_cost = 306.035 RAPTOR_TS1 costs 0 real_cost = 305.929 RAPTORESS_TS5-scwrl costs 0 real_cost = 304.835 RAPTORESS_TS5 costs 0 real_cost = 305.026 RAPTORESS_TS4-scwrl costs 0 real_cost = 230.447 RAPTORESS_TS4 costs 0 real_cost = 227.615 RAPTORESS_TS3-scwrl costs 0 real_cost = 286.543 RAPTORESS_TS3 costs 0 real_cost = 289.881 RAPTORESS_TS2-scwrl costs 0 real_cost = 252.749 RAPTORESS_TS2 costs 0 real_cost = 257.262 RAPTORESS_TS1-scwrl costs 0 real_cost = 304.123 RAPTORESS_TS1 costs 0 real_cost = 304.1 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 253.614 RAPTOR-ACE_TS5 costs 0 real_cost = 269.546 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 305.848 RAPTOR-ACE_TS4 costs 0 real_cost = 305.798 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 259.44 RAPTOR-ACE_TS3 costs 0 real_cost = 259.627 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 307.575 RAPTOR-ACE_TS2 costs 0 real_cost = 307.665 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 247.967 RAPTOR-ACE_TS1 costs 0 real_cost = 250.37 Pmodeller6_TS5-scwrl costs 0 real_cost = 257.534 Pmodeller6_TS5 costs 0 real_cost = 244.699 Pmodeller6_TS4-scwrl costs 0 real_cost = 250.513 Pmodeller6_TS4 costs 0 real_cost = 247.028 Pmodeller6_TS3-scwrl costs 0 real_cost = 235.054 Pmodeller6_TS3 costs 0 real_cost = 235.054 Pmodeller6_TS2-scwrl costs 0 real_cost = 244.202 Pmodeller6_TS2 costs 0 real_cost = 244.202 Pmodeller6_TS1-scwrl costs 0 real_cost = 292.73 Pmodeller6_TS1 costs 0 real_cost = 290.345 Phyre-2_TS5-scwrl costs 0 real_cost = 255.53 Phyre-2_TS5 costs 0 real_cost = 254.888 Phyre-2_TS4-scwrl costs 0 real_cost = 252.964 Phyre-2_TS4 costs 0 real_cost = 252.633 Phyre-2_TS3-scwrl costs 0 real_cost = 267.666 Phyre-2_TS3 costs 0 real_cost = 267.451 Phyre-2_TS2-scwrl costs 0 real_cost = 267.666 Phyre-2_TS2 costs 0 real_cost = 267.451 Phyre-2_TS1-scwrl costs 0 real_cost = 249.584 Phyre-2_TS1 costs 0 real_cost = 251.648 Phyre-1_TS1-scwrl costs 0 real_cost = 351.071 Phyre-1_TS1 costs 0 real_cost = 351.842 Pcons6_TS5-scwrl costs 0 real_cost = 244.202 Pcons6_TS5 costs 0 real_cost = 244.202 Pcons6_TS4-scwrl costs 0 real_cost = 257.534 Pcons6_TS4 costs 0 real_cost = 244.699 Pcons6_TS3-scwrl costs 0 real_cost = 249.011 Pcons6_TS3 costs 0 real_cost = 245.802 Pcons6_TS2-scwrl costs 0 real_cost = 249.011 Pcons6_TS2 costs 0 real_cost = 245.802 Pcons6_TS1-scwrl costs 0 real_cost = 249.011 Pcons6_TS1 costs 0 real_cost = 245.802 PROTINFO_TS5-scwrl costs 0 real_cost = 251.722 PROTINFO_TS5 costs 0 real_cost = 276.719 PROTINFO_TS4-scwrl costs 0 real_cost = 240.4 PROTINFO_TS4 costs 0 real_cost = 265.11 PROTINFO_TS3-scwrl costs 0 real_cost = 262.16 PROTINFO_TS3 costs 0 real_cost = 265.395 PROTINFO_TS2-scwrl costs 0 real_cost = 245.563 PROTINFO_TS2 costs 0 real_cost = 264.486 PROTINFO_TS1-scwrl costs 0 real_cost = 323.092 PROTINFO_TS1 costs 0 real_cost = 320.782 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 234.1 PROTINFO-AB_TS5 costs 0 real_cost = 234.454 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 272.052 PROTINFO-AB_TS4 costs 0 real_cost = 267.169 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 245.563 PROTINFO-AB_TS3 costs 0 real_cost = 264.486 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 256.149 PROTINFO-AB_TS2 costs 0 real_cost = 257.73 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 251.722 PROTINFO-AB_TS1 costs 0 real_cost = 276.719 POMYSL_TS5-scwrl costs 0 real_cost = 315.112 POMYSL_TS5 costs 0 real_cost = 314.97 POMYSL_TS4-scwrl costs 0 real_cost = 311.785 POMYSL_TS4 costs 0 real_cost = 311.491 POMYSL_TS3-scwrl costs 0 real_cost = 302.118 POMYSL_TS3 costs 0 real_cost = 301.941 POMYSL_TS2-scwrl costs 0 real_cost = 326.357 POMYSL_TS2 costs 0 real_cost = 326.249 POMYSL_TS1-scwrl costs 0 real_cost = 315.806 POMYSL_TS1 costs 0 real_cost = 315.841 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 295.727 NN_PUT_lab_TS1 costs 0 real_cost = 297.195 MetaTasser_TS5-scwrl costs 0 real_cost = 265.662 MetaTasser_TS5 costs 0 real_cost = 269.54 MetaTasser_TS4-scwrl costs 0 real_cost = 239.983 MetaTasser_TS4 costs 0 real_cost = 246.406 MetaTasser_TS3-scwrl costs 0 real_cost = 275.136 MetaTasser_TS3 costs 0 real_cost = 267.847 MetaTasser_TS2-scwrl costs 0 real_cost = 262.944 MetaTasser_TS2 costs 0 real_cost = 251.768 MetaTasser_TS1-scwrl costs 0 real_cost = 292.061 MetaTasser_TS1 costs 0 real_cost = 297.666 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 212.319 Ma-OPUS-server_TS5 costs 0 real_cost = 212.314 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 310.699 Ma-OPUS-server_TS4 costs 0 real_cost = 311.597 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 317.956 Ma-OPUS-server_TS3 costs 0 real_cost = 317.954 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 296.704 Ma-OPUS-server_TS2 costs 0 real_cost = 294.473 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 240.818 Ma-OPUS-server_TS1 costs 0 real_cost = 250.153 LOOPP_TS5-scwrl costs 0 real_cost = 289.429 LOOPP_TS5 costs 0 real_cost = 289.179 LOOPP_TS4-scwrl costs 0 real_cost = 309.2 LOOPP_TS4 costs 0 real_cost = 309.352 LOOPP_TS3-scwrl costs 0 real_cost = 322.738 LOOPP_TS3 costs 0 real_cost = 322.557 LOOPP_TS2-scwrl costs 0 real_cost = 253.618 LOOPP_TS2 costs 0 real_cost = 252.596 LOOPP_TS1-scwrl costs 0 real_cost = 295.727 LOOPP_TS1 costs 0 real_cost = 297.195 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 326.963 Huber-Torda-Server_TS5 costs 0 real_cost = 342.307 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 295.08 Huber-Torda-Server_TS4 costs 0 real_cost = 320.018 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 289.124 Huber-Torda-Server_TS3 costs 0 real_cost = 317.099 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 277.259 Huber-Torda-Server_TS2 costs 0 real_cost = 308.231 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 366.867 Huber-Torda-Server_TS1 costs 0 real_cost = 388.452 HHpred3_TS1-scwrl costs 0 real_cost = 312.755 HHpred3_TS1 costs 0 real_cost = 376.264 HHpred2_TS1-scwrl costs 0 real_cost = 312.755 HHpred2_TS1 costs 0 real_cost = 376.264 HHpred1_TS1-scwrl costs 0 real_cost = 312.755 HHpred1_TS1 costs 0 real_cost = 376.264 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 267.429 GeneSilicoMetaServer_TS5 costs 0 real_cost = 269.919 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 298.669 GeneSilicoMetaServer_TS4 costs 0 real_cost = 298.667 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 305.186 GeneSilicoMetaServer_TS3 costs 0 real_cost = 305.074 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 325.504 GeneSilicoMetaServer_TS2 costs 0 real_cost = 328.774 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = 251.555 GeneSilicoMetaServer_TS1 costs 0 real_cost = 255.265 FUNCTION_TS5-scwrl costs 0 real_cost = 291.552 FUNCTION_TS5 costs 0 real_cost = 297.428 FUNCTION_TS4-scwrl costs 0 real_cost = 248.085 FUNCTION_TS4 costs 0 real_cost = 252.049 FUNCTION_TS3-scwrl costs 0 real_cost = 246.33 FUNCTION_TS3 costs 0 real_cost = 237.75 FUNCTION_TS2-scwrl costs 0 real_cost = 299.505 FUNCTION_TS2 costs 0 real_cost = 300.791 FUNCTION_TS1-scwrl costs 0 real_cost = 262.79 FUNCTION_TS1 costs 0 real_cost = 267.556 FUGUE_AL5-scwrl costs 0 real_cost = 336.106 FUGUE_AL5 costs 0 real_cost = 356.906 FUGUE_AL4-scwrl costs 0 real_cost = 307.501 FUGUE_AL4 costs 0 real_cost = 368.427 FUGUE_AL3-scwrl costs 0 real_cost = 338.784 FUGUE_AL3 costs 0 real_cost = 338.784 FUGUE_AL2-scwrl costs 0 real_cost = 329.002 FUGUE_AL2 costs 0 real_cost = 388.01 FUGUE_AL1-scwrl costs 0 real_cost = 274.91 FUGUE_AL1 costs 0 real_cost = 353.702 FUGMOD_TS5-scwrl costs 0 real_cost = 261.227 FUGMOD_TS5 costs 0 real_cost = 262.575 FUGMOD_TS4-scwrl costs 0 real_cost = 283.448 FUGMOD_TS4 costs 0 real_cost = 288.998 FUGMOD_TS3-scwrl costs 0 real_cost = 263.773 FUGMOD_TS3 costs 0 real_cost = 265.32 FUGMOD_TS2-scwrl costs 0 real_cost = 323.771 FUGMOD_TS2 costs 0 real_cost = 322.073 FUGMOD_TS1-scwrl costs 0 real_cost = 263.85 FUGMOD_TS1 costs 0 real_cost = 279.022 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 273.35 FPSOLVER-SERVER_TS5 costs 0 real_cost = 282.639 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 318.604 FPSOLVER-SERVER_TS4 costs 0 real_cost = 318.673 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 317.792 FPSOLVER-SERVER_TS3 costs 0 real_cost = 318.579 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 321.119 FPSOLVER-SERVER_TS2 costs 0 real_cost = 321.032 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 317.321 FPSOLVER-SERVER_TS1 costs 0 real_cost = 317.15 FORTE2_AL5-scwrl costs 0 real_cost = 266.272 FORTE2_AL5 costs 0 real_cost = 324.638 FORTE2_AL4-scwrl costs 0 real_cost = 257.751 FORTE2_AL4 costs 0 real_cost = 315.943 FORTE2_AL3-scwrl costs 0 real_cost = 384.976 FORTE2_AL3 costs 0 real_cost = 384.976 FORTE2_AL2-scwrl costs 0 real_cost = 423.198 FORTE2_AL1-scwrl costs 0 real_cost = 291.514 FORTE2_AL1 costs 0 real_cost = 351.7 FORTE1_AL5-scwrl costs 0 real_cost = 266.272 FORTE1_AL5 costs 0 real_cost = 324.638 FORTE1_AL4-scwrl costs 0 real_cost = 257.751 FORTE1_AL4 costs 0 real_cost = 315.943 FORTE1_AL3-scwrl costs 0 real_cost = 384.976 FORTE1_AL3 costs 0 real_cost = 384.976 FORTE1_AL2-scwrl costs 0 real_cost = 423.198 FORTE1_AL1-scwrl costs 0 real_cost = 291.514 FORTE1_AL1 costs 0 real_cost = 351.7 FOLDpro_TS5-scwrl costs 0 real_cost = 315.314 FOLDpro_TS5 costs 0 real_cost = 315.205 FOLDpro_TS4-scwrl costs 0 real_cost = 316.738 FOLDpro_TS4 costs 0 real_cost = 316.624 FOLDpro_TS3-scwrl costs 0 real_cost = 299.275 FOLDpro_TS3 costs 0 real_cost = 298.962 FOLDpro_TS2-scwrl costs 0 real_cost = 314.823 FOLDpro_TS2 costs 0 real_cost = 314.886 FOLDpro_TS1-scwrl costs 0 real_cost = 267.826 FOLDpro_TS1 costs 0 real_cost = 268.491 FAMS_TS5-scwrl costs 0 real_cost = 248.085 FAMS_TS5 costs 0 real_cost = 252.049 FAMS_TS4-scwrl costs 0 real_cost = 298.85 FAMS_TS4 costs 0 real_cost = 298.798 FAMS_TS3-scwrl costs 0 real_cost = 303.395 FAMS_TS3 costs 0 real_cost = 302.679 FAMS_TS2-scwrl costs 0 real_cost = 302.975 FAMS_TS2 costs 0 real_cost = 301.96 FAMS_TS1-scwrl costs 0 real_cost = 310.096 FAMS_TS1 costs 0 real_cost = 310.119 FAMSD_TS5-scwrl costs 0 real_cost = 310.106 FAMSD_TS5 costs 0 real_cost = 309.789 FAMSD_TS4-scwrl costs 0 real_cost = 222.539 FAMSD_TS4 costs 0 real_cost = 223.757 FAMSD_TS3-scwrl costs 0 real_cost = 252.997 FAMSD_TS3 costs 0 real_cost = 250.661 FAMSD_TS2-scwrl costs 0 real_cost = 279.071 FAMSD_TS2 costs 0 real_cost = 274.303 FAMSD_TS1-scwrl costs 0 real_cost = 299.173 FAMSD_TS1 costs 0 real_cost = 291.408 Distill_TS5-scwrl costs 0 real_cost = 298.912 Distill_TS4-scwrl costs 0 real_cost = 311.963 Distill_TS3-scwrl costs 0 real_cost = 304.665 Distill_TS2-scwrl costs 0 real_cost = 311.913 Distill_TS1-scwrl costs 0 real_cost = 287.426 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 288.652 CaspIta-FOX_TS5 costs 0 real_cost = 288.532 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 341.472 CaspIta-FOX_TS4 costs 0 real_cost = 336.107 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 308.719 CaspIta-FOX_TS3 costs 0 real_cost = 308.633 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 275.236 CaspIta-FOX_TS2 costs 0 real_cost = 277.019 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 354.832 CaspIta-FOX_TS1 costs 0 real_cost = 336.488 CIRCLE_TS5-scwrl costs 0 real_cost = 240.841 CIRCLE_TS5 costs 0 real_cost = 237.757 CIRCLE_TS4-scwrl costs 0 real_cost = 303.395 CIRCLE_TS4 costs 0 real_cost = 302.679 CIRCLE_TS3-scwrl costs 0 real_cost = 314.184 CIRCLE_TS3 costs 0 real_cost = 313.879 CIRCLE_TS2-scwrl costs 0 real_cost = 302.975 CIRCLE_TS2 costs 0 real_cost = 301.96 CIRCLE_TS1-scwrl costs 0 real_cost = 298.85 CIRCLE_TS1 costs 0 real_cost = 298.798 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 313.194 Bilab-ENABLE_TS5 costs 0 real_cost = 313.194 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 315.202 Bilab-ENABLE_TS4 costs 0 real_cost = 315.202 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 315.787 Bilab-ENABLE_TS3 costs 0 real_cost = 315.787 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 307.156 Bilab-ENABLE_TS2 costs 0 real_cost = 307.156 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 310.322 Bilab-ENABLE_TS1 costs 0 real_cost = 310.322 BayesHH_TS1-scwrl costs 0 real_cost = 318.62 BayesHH_TS1 costs 0 real_cost = 318.545 ABIpro_TS5-scwrl costs 0 real_cost = 282.54 ABIpro_TS5 costs 0 real_cost = 282.54 ABIpro_TS4-scwrl costs 0 real_cost = 298.34 ABIpro_TS4 costs 0 real_cost = 298.34 ABIpro_TS3-scwrl costs 0 real_cost = 242.646 ABIpro_TS3 costs 0 real_cost = 242.646 ABIpro_TS2-scwrl costs 0 real_cost = 283.573 ABIpro_TS2 costs 0 real_cost = 283.573 ABIpro_TS1-scwrl costs 0 real_cost = 260.519 ABIpro_TS1 costs 0 real_cost = 260.519 3Dpro_TS5-scwrl costs 0 real_cost = 315.237 3Dpro_TS5 costs 0 real_cost = 314.908 3Dpro_TS4-scwrl costs 0 real_cost = 297.303 3Dpro_TS4 costs 0 real_cost = 297.108 3Dpro_TS3-scwrl costs 0 real_cost = 283.573 3Dpro_TS3 costs 0 real_cost = 283.573 3Dpro_TS2-scwrl costs 0 real_cost = 314.273 3Dpro_TS2 costs 0 real_cost = 313.99 3Dpro_TS1-scwrl costs 0 real_cost = 260.519 3Dpro_TS1 costs 0 real_cost = 260.519 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 221.286 3D-JIGSAW_TS5 costs 0 real_cost = 232.106 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 250.039 3D-JIGSAW_TS4 costs 0 real_cost = 257.724 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 347.496 3D-JIGSAW_TS3 costs 0 real_cost = 330.127 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 249.601 3D-JIGSAW_TS2 costs 0 real_cost = 257.814 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 321.001 3D-JIGSAW_TS1 costs 0 real_cost = 320.722 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 210.331 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 214.674 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 211.024 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 214.639 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 259.511 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 257.856 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 248.501 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 255.899 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 205.336 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 217.894 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 233.349 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 233.349 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 318.123 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 318.123 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 308.132 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 308.132 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 301.355 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 301.355 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 286.72 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 286.72 chimera4.pdb.gz costs 0 real_cost = 243.894 chimera3.pdb.gz costs 0 real_cost = 238.131 chimera2.pdb.gz costs 0 real_cost = 243.016 chimera1.pdb.gz costs 0 real_cost = 243.274 T0309.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 249.664 T0309.try9-opt2.pdb.gz costs 0 real_cost = 249.588 T0309.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 255.75 T0309.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 253.753 T0309.try9-opt1.pdb.gz costs 0 real_cost = 250.368 T0309.try9-opt1.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 255.692 T0309.try9-opt1.gromacs0.pdb.gz costs 0 real_cost = 253.061 T0309.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 251.514 T0309.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 254.136 T0309.try8-opt2.pdb.gz costs 0 real_cost = 252.021 T0309.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 259.233 T0309.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 254.334 T0309.try8-opt1.pdb.gz costs 0 real_cost = 251.52 T0309.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 250.795 T0309.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 247.786 T0309.try7-opt2.pdb.gz costs 0 real_cost = 243.413 T0309.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 243.112 T0309.try7-opt1.pdb.gz costs 0 real_cost = 237.836 T0309.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 238.808 T0309.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 238.451 T0309.try6-opt2.pdb.gz costs 0 real_cost = 238.662 T0309.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 243.647 T0309.try6-opt1.pdb.gz costs 0 real_cost = 236.471 T0309.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 237.531 T0309.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 240.716 T0309.try5-opt2.pdb.gz costs 0 real_cost = 240.498 T0309.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 247.612 T0309.try5-opt1.pdb.gz costs 0 real_cost = 238.873 T0309.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 239.181 T0309.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 238.619 T0309.try4-opt2.pdb.gz costs 0 real_cost = 239.205 T0309.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 245.335 T0309.try4-opt1.pdb.gz costs 0 real_cost = 237.666 T0309.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 237.968 T0309.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 239.48 T0309.try3-opt2.pdb.gz costs 0 real_cost = 241.069 T0309.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 248.121 T0309.try3-opt1.pdb.gz costs 0 real_cost = 246.521 T0309.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 246.272 T0309.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 239.559 T0309.try2-opt2.pdb.gz costs 0 real_cost = 241.965 T0309.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 249.758 T0309.try2-opt1.pdb.gz costs 0 real_cost = 243.06 T0309.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 242.356 T0309.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 253.716 T0309.try10-opt2.pdb.gz costs 0 real_cost = 253.531 T0309.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 255.235 T0309.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 254.618 T0309.try10-opt1.pdb.gz costs 0 real_cost = 251.733 T0309.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 251.503 T0309.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 248.383 T0309.try1-opt2.pdb.gz costs 0 real_cost = 249.061 T0309.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 241.391 T0309.try1-opt1.pdb.gz costs 0 real_cost = 246.819 T0309.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 245.251 ../model5.ts-submitted costs 0 real_cost = 242.349 ../model4.ts-submitted costs 0 real_cost = 239.264 ../model3.ts-submitted costs 0 real_cost = 241.068 ../model2.ts-submitted costs 0 real_cost = 243.459 ../model1.ts-submitted costs 0 real_cost = 253.571 align5 costs 0 real_cost = 255.42 align4 costs 0 real_cost = 238.233 align3 costs 0 real_cost = 275.896 align2 costs 0 real_cost = 202.552 align1 costs 0 real_cost = 227.898 T0309.try1-opt2.pdb costs 0 real_cost = 249.087 model5-scwrl costs 0 real_cost = 240.84 model5.ts-submitted costs 0 real_cost = 242.349 model4-scwrl costs 0 real_cost = 239.953 model4.ts-submitted costs 0 real_cost = 239.264 model3-scwrl costs 0 real_cost = 243.937 model3.ts-submitted costs 0 real_cost = 241.068 model2-scwrl costs 0 real_cost = 244.326 model2.ts-submitted costs 0 real_cost = 243.459 model1-scwrl costs 0 real_cost = 253.463 model1.ts-submitted costs 0 real_cost = 253.571 2h4oA costs 0 real_cost = -871.6 # command:CPU_time= 58.6941 sec, elapsed time= 121.768 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty