Best Alignments for T0309

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4519e+003.24e-03
2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3775e+005.06e-02
1hyuA/T0309-1hyuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hyuA/T0309-1hyuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3857e+006.98e-02 1hyuA c.3.1.5
c.3.1.5
c.47.1.2
c.47.1.2
1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8919e+002.56e+00 3seb b.40.2.2
d.15.6.1
1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3543e+004.59e-02 e.1.1.1
1zynA/T0309-1zynA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zynA/T0309-1zynA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1523e+012.77e+00
1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1819e+017.06e-02 1repC a.4.5.10
a.4.5.10
1y96B/T0309-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0309-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2427e+017.98e-03
2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2441e+018.12e-01
1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3486e+014.64e+00 f.1.4.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001