Best Alignments for T0309

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0799e+005.06e-02
1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6870e+002.56e+00 3seb b.40.2.2
d.15.6.1
2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4540e+003.24e-03
1ma3A/T0309-1ma3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ma3A/T0309-1ma3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0929e+001.30e+02 c.31.1.5
1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7126e+004.64e+00 f.1.4.1
1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1406e+007.06e-02 1repC a.4.5.10
a.4.5.10
2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9228e+008.12e-01
1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1757e+004.59e-02 e.1.1.1
1a53/T0309-1a53-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a53/T0309-1a53-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6513e+002.01e+01 1a53 c.1.2.4
1d2oA/T0309-1d2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d2oA/T0309-1d2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7002e+002.59e+00 1d2oA b.3.5.1
b.3.5.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001