# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2oA 187 5.40e-01 1d2oA b.3.5.1,b.3.5.1 22625,22626 2fvtA 135 1.36e+00 1repC 251 1.55e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2g0uA 92 1.90e+00 1v30A 124 1.98e+00 1aisA 182 2.16e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1q59A 172 2.24e+00 f.1.4.1 95881 1ma3A 253 2.71e+00 c.31.1.5 78883 2rslA 140 3.05e+00 2rslA c.53.1.1 33345 2fclA 169 3.48e+00 1xwvA 129 3.67e+00 1svpA 161 5.83e+00 1svpA b.47.1.3 26384 1dyqA 234 6.62e+00 3seb b.40.2.2,d.15.6.1 59140,59141 1y96B 85 7.56e+00 1wspA 84 7.89e+00 2a2pA 129 8.15e+00 1wmhA 89 8.22e+00 1kqpA 271 8.44e+00 c.26.2.1 72883 1iz5A 249 8.54e+00 d.131.1.2,d.131.1.2 83834,83835 1ydmA 187 8.98e+00 2d1uA 104 1.03e+01 1hrkA 359 1.12e+01 1hrkA c.92.1.1 61228 1m93A 55 1.14e+01 e.1.1.1 91235 2axwA 134 1.34e+01 2b3wA 168 1.35e+01 1ztsA 139 1.47e+01 1u6tA 121 1.47e+01 2etxA 209 1.53e+01 2b7eA 59 1.58e+01 1sqsA 242 1.58e+01 c.23.5.5 98968 1cf7B 95 1.59e+01 1cf7B a.4.5.17 16152 1xedA 117 1.75e+01 1vkuA 100 1.76e+01 a.28.1.1 108690 2as9A 210 1.77e+01 2fj6A 82 1.83e+01 1n91A 108 1.85e+01 d.206.1.1 80326 1zx5A 300 1.86e+01 1rr7A 129 1.99e+01 a.4.1.14 105075 1zhvA 134 2.03e+01 1nu4A 97 2.12e+01 d.58.7.1 80731 1o7dE 126 2.21e+01 1jhfA 202 2.22e+01 a.4.5.2,b.87.1.1 63057,63058 2fdrA 229 2.23e+01 1mzgA 146 2.29e+01 d.224.1.1 79696 5pal 109 2.40e+01 1a75A a.39.1.4 17215 1yf9A 171 2.41e+01 2d3jA 157 2.45e+01 2f4mA 295 2.48e+01 1ddf 127 2.50e+01 1ddf a.77.1.2 18423 1qhlA 227 2.59e+01 1qhlA c.37.1.12 32382 1bby 69 2.61e+01 2bby a.4.5.15 16149 1gsoA 431 2.75e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1mdc 133 2.75e+01 1hmt b.60.1.2 27198 2flsA 132 2.82e+01 2bwbA 46 2.82e+01 1nhcA 336 2.91e+01 b.80.1.3 91879 2bg5A 324 2.95e+01 1tiqA 180 2.98e+01 d.108.1.1 107010 1quqB 121 3.04e+01 1quqB b.40.4.3 25305 1vqoI 162 3.12e+01 1sek 378 3.35e+01 1sek e.1.1.1 42675 1dkuA 317 3.37e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1kq3A 376 3.43e+01 e.22.1.2 68790 2br9A 234 3.44e+01 1qopB 396 3.46e+01 2tysB c.79.1.1 35270 1agjA 242 3.55e+01 1agjA b.47.1.1 25827 1exg 110 3.57e+01 1exg b.2.2.1 22387 2a33A 215 3.62e+01 1exrA 148 3.72e+01 1cll a.39.1.5 17299 2gw6A 123 3.73e+01 1rwiA 270 3.73e+01 b.68.9.1 97987 1v0lA 313 3.74e+01 c.1.8.3 108207 1a53 247 3.88e+01 1a53 c.1.2.4 28564 1in0A 163 3.92e+01 d.58.49.1,d.58.49.1 83694,83695 1zpsA 138 4.23e+01 2cu3A 64 4.46e+01 1ygtA 111 4.49e+01 1knzA 164 4.54e+01 e.34.1.1 68709 1vqoL 165 4.57e+01 1kyqA 274 5.05e+01 c.2.1.11,e.37.1.1 73281,73282 1z6oA 212 5.36e+01 1kshA 186 5.40e+01 c.37.1.8 72914 1f8rA 498 5.43e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1l1sA 113 5.49e+01 c.114.1.1 73484 1g6gA 127 5.53e+01 1g6gA b.26.1.2 23916 1wwhA 119 5.53e+01 1utiA 58 5.54e+01 b.34.2.1 99962 2f60K 64 5.62e+01 1ucrA 78 5.76e+01 a.4.5.45 99188 2aefA 234 5.92e+01 1yaxA 153 6.23e+01 1w2yA 229 6.39e+01 a.204.1.1 109140 1zthA 258 6.45e+01 1ft5A 211 6.72e+01 1bvb a.138.1.3 19681 1g8lA 411 6.75e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2afbA 351 7.00e+01 1cnv 299 7.23e+01 1cnv c.1.8.5 28989 2ez6A 221 7.30e+01 1c52 131 7.52e+01 1c52 a.3.1.1 15810 1rqtA 37 7.53e+01 a.108.1.1 97771 1wdnA 226 7.56e+01 1lst c.94.1.1 35816 1gyxA 76 7.58e+01 d.80.1.1 76387 1pyfA 312 7.58e+01 c.1.7.1 95334 1r0uA 148 7.67e+01 b.60.1.5 96741 1ej6D 418 7.73e+01 i.7.1.1 45970 1x4tA 92 7.75e+01 1g4yB 101 7.87e+01 1g4yB f.15.1.1 60251 1epwA 1290 7.97e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1ii7A 333 8.05e+01 1ii7A d.159.1.4 62415 1tt7A 330 8.23e+01 1p5vA 235 8.26e+01 b.1.11.1,b.7.2.1 87812,87813 1e9rA 437 8.86e+01 c.37.1.11 64827