# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hyuA 521 2.98e-01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1zynA 202 3.83e-01 1rwiA 270 6.05e-01 b.68.9.1 97987 1dyqA 234 1.17e+00 3seb b.40.2.2,d.15.6.1 59140,59141 2fvtA 135 1.63e+00 1iz5A 249 1.94e+00 d.131.1.2,d.131.1.2 83834,83835 1my6A 199 3.03e+00 a.2.11.1,d.44.1.1 85232,85233 1souA 194 3.20e+00 c.124.1.6 105858 1thg 544 3.34e+00 1thg c.69.1.17 34763 1vfsA 386 3.62e+00 b.49.2.2,c.1.6.1 108584,108585 1xwvA 129 4.42e+00 1mm4A 170 5.23e+00 f.4.1.2 79294 1xedA 117 5.42e+00 1mixA 206 6.32e+00 a.11.2.1,b.55.1.5 79166,79167 1u2xA 474 6.66e+00 c.72.1.3 107622 2aw2A 120 7.25e+00 2d1uA 104 7.27e+00 1wspA 84 8.08e+00 1ydmA 187 8.38e+00 1fl2A 310 9.56e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 2a2pA 129 9.64e+00 1rwzA 245 9.69e+00 d.131.1.2,d.131.1.2 98005,98006 1d2oA 187 9.83e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1ockA 412 1.07e+01 c.117.1.1 86802 1c7nA 399 1.08e+01 1d2fA c.67.1.3 34413 2axwA 134 1.10e+01 2cxcA 144 1.22e+01 2ewrA 170 1.29e+01 2fclA 169 1.29e+01 2rslA 140 1.36e+01 2rslA c.53.1.1 33345 1m93A 55 1.50e+01 e.1.1.1 91235 1j5vA 351 1.59e+01 c.72.1.1 71585 1qavA 90 1.64e+01 1qauA b.36.1.1 24777 1hqz1 141 1.67e+01 1qhlA 227 1.67e+01 1qhlA c.37.1.12 32382 2axpA 173 1.70e+01 1pp0A 199 1.71e+01 d.103.1.1 104211 2f4mA 295 1.71e+01 1ktjA 129 1.75e+01 b.1.18.7 72974 1q59A 172 1.76e+01 f.1.4.1 95881 1tq5A 242 1.78e+01 1nxiA 132 1.82e+01 d.58.47.1 86381 1lqtA 456 1.82e+01 c.3.1.1,c.4.1.1 74198,74199 1tzaA 134 1.83e+01 b.1.23.1 107468 1oa2A 218 1.90e+01 b.29.1.11 86721 1id0A 152 1.96e+01 d.122.1.3 66111 1fecA 490 2.02e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2awpA 198 2.03e+01 1igs 248 2.09e+01 1a53 c.1.2.4 28565 1a53 247 2.14e+01 1a53 c.1.2.4 28564 1h8vA 218 2.20e+01 2nlrA b.29.1.11 60795 1ej0A 180 2.24e+01 1ej0A c.66.1.2 34179 1ri6A 343 2.25e+01 b.69.11.1 97503 1eceA 358 2.37e+01 1eceA c.1.8.3 28813 1g8lA 411 2.43e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1yizA 429 2.48e+01 1flcA 432 2.56e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1xf1A 926 2.59e+01 1skoB 130 2.65e+01 d.110.7.1 105677 1p3cA 215 2.65e+01 b.47.1.1 93996 1yiyA 429 2.70e+01 1ddf 127 2.73e+01 1ddf a.77.1.2 18423 2bg5A 324 2.78e+01 1ma3A 253 2.80e+01 c.31.1.5 78883 1ltlA 279 2.95e+01 b.40.4.11 84701 1m07A 111 2.98e+01 d.5.1.1 78328 1sqsA 242 3.00e+01 c.23.5.5 98968 1tlk 154 3.00e+01 1tlk b.1.1.4 21707 1iscA 192 3.03e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1tf1A 198 3.05e+01 d.110.2.2 106826 2gw6A 123 3.06e+01 1fhgA 154 3.09e+01 1tlk b.1.1.4 21706 1o58A 303 3.12e+01 c.79.1.1 92491 1t64A 377 3.14e+01 c.42.1.2 106543 1xewY 172 3.14e+01 2pil 159 3.14e+01 2pil d.24.1.1 38376 1a0rP 245 3.21e+01 1b9yC c.47.1.6 33054 1xn5A 146 3.44e+01 1sr4B 261 3.45e+01 d.151.1.1 105949 1vetB 125 3.55e+01 d.110.7.1 108554 1njhA 119 3.62e+01 b.128.1.1 85787 1e9rA 437 3.67e+01 c.37.1.11 64827 1ygs 234 3.68e+01 1ygs b.26.1.1 23907 1b25A 619 3.81e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2g9iA 249 3.90e+01 2fj6A 82 3.92e+01 2bb2 181 4.02e+01 2bb2 b.11.1.1,b.11.1.1 23604,23605 1nijA 318 4.05e+01 c.37.1.10,d.237.1.1 85741,85742 1h2cA 140 4.23e+01 b.31.1.1 83462 1pyfA 312 4.37e+01 c.1.7.1 95334 2f86B 143 4.44e+01 2awfA 172 4.49e+01 1pnsC 206 4.54e+01 i.1.1.1 88170 1ri5A 298 4.55e+01 c.66.1.34 97502 1ur1A 378 4.58e+01 c.1.8.3 99804 2c3zA 222 4.66e+01 1cc1S 283 4.75e+01 2frvA e.19.1.1 43313 1cby 259 4.87e+01 1cby d.103.1.1 40705 3seb 238 4.88e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2bbkL 125 4.90e+01 2bbkL g.21.1.1 44882 2adbA 148 4.92e+01 2b7eA 59 5.06e+01 1z9tA 255 5.11e+01 2fwkA 121 5.14e+01 1epwA 1290 5.16e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1sek 378 5.31e+01 1sek e.1.1.1 42675 1exg 110 5.45e+01 1exg b.2.2.1 22387 1c7sA 858 5.53e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1qopB 396 5.56e+01 2tysB c.79.1.1 35270 2aw5A 541 5.57e+01 1dzlA 505 5.66e+01 1dzlA b.121.6.1 23586 1i50I 122 5.67e+01 g.41.3.1,g.41.3.1 61762,61763 1pbgA 468 5.84e+01 1e70M c.1.8.4 28946 2cygA 312 5.86e+01 1fjgC 239 6.02e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1m98A 317 6.09e+01 a.175.1.1,d.17.4.6 78866,78867 1q48A 134 6.20e+01 d.224.1.2 95783 1twfI 122 6.24e+01 1n91A 108 6.31e+01 d.206.1.1 80326 2aefA 234 6.38e+01 1k0hA 117 6.49e+01 b.106.1.2 71975 1fg7A 356 6.49e+01 1gewA c.67.1.1 59819 1a99A 344 6.59e+01 1pot c.94.1.1 35812 1v30A 124 6.68e+01 1bia 321 6.77e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1xkiA 162 6.78e+01 1xnaA 183 6.80e+01 1xnaA b.18.1.8 23773 1tljA 213 6.80e+01 d.282.1.1 107126 1wmhB 86 6.85e+01 1p8kZ 254 6.93e+01 d.95.2.1,d.95.2.1 94361,94362 1vr0A 247 6.95e+01 1gewA 356 7.09e+01 1gewA c.67.1.1 60470 1rovA 857 7.13e+01 a.119.1.1,b.12.1.1 97674,97675 1xuqA 212 7.44e+01 1repC 251 7.60e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1i0hA 205 7.65e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 1ix9A 205 7.65e+01 a.2.11.1,d.44.1.1 76899,76900 1od8A 313 7.70e+01 c.1.8.3 86838 1gklA 297 7.78e+01 c.69.1.2 65250 1wb4A 297 7.80e+01 1fw9A 164 7.83e+01 1fw9A d.190.1.1 60059 1tt8A 164 7.83e+01 1c7qA 445 7.90e+01 2pgi c.80.1.2 35307 1e0wA 313 7.96e+01 1taxA c.1.8.3 59150 1rp4A 389 7.98e+01 a.227.1.1 105027 1l6xA 207 8.00e+01 b.1.1.2,b.1.1.2 73642,73643 1xttA 216 8.08e+01 1aq0A 306 8.10e+01 1aq0A c.1.8.3 28842 1t9bA 677 8.18e+01 1plq 258 8.18e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1veaA 148 8.24e+01 d.275.1.1 108529 1yaxA 153 8.27e+01 1g6gA 127 8.31e+01 1g6gA b.26.1.2 23916 1xyiA 66 8.39e+01 1r6xA 395 8.41e+01 b.122.1.3,c.26.1.5 97167,97168 1bo4A 168 8.55e+01 1bo4A d.108.1.1 40798 2g6tA 306 8.61e+01 1v0lA 313 8.71e+01 c.1.8.3 108207 1ahsA 126 8.73e+01 1ahsA b.19.1.1 23794 2gmqA 118 8.79e+01 1fc1A 224 8.88e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 2breA 219 9.00e+01