# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hyuA 521 4.61e-01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1zynA 202 5.58e-01 1d2oA 187 1.29e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 2fvtA 135 2.92e+00 1repC 251 3.30e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2g0uA 92 3.95e+00 1souA 194 3.97e+00 c.124.1.6 105858 1v30A 124 4.10e+00 1aisA 182 4.43e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1q59A 172 4.59e+00 f.1.4.1 95881 2ewrA 170 4.90e+00 1ma3A 253 5.43e+00 c.31.1.5 78883 2rslA 140 6.04e+00 2rslA c.53.1.1 33345 2fclA 169 6.80e+00 1nxiA 132 6.81e+00 d.58.47.1 86381 1xwvA 129 7.13e+00 1ih8A 271 1.04e+01 2nsyA c.26.2.1 62377 1svpA 161 1.08e+01 1svpA b.47.1.3 26384 1dyqA 234 1.21e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1y96B 85 1.37e+01 1vlqA 337 1.40e+01 c.69.1.25 108848 1wspA 84 1.42e+01 1pnsC 206 1.43e+01 i.1.1.1 88170 2a2pA 129 1.46e+01 1wmhA 89 1.48e+01 1kevA 351 1.51e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1kqpA 271 1.51e+01 c.26.2.1 72883 1iz5A 249 1.53e+01 d.131.1.2,d.131.1.2 83834,83835 1qorA 327 1.60e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1ydmA 187 1.60e+01 1fjgC 239 1.68e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 2d1uA 104 1.81e+01 2adoA 196 1.83e+01 1xhfA 123 1.89e+01 1mm4A 170 1.89e+01 f.4.1.2 79294 1hrkA 359 1.96e+01 1hrkA c.92.1.1 61228 1m93A 55 1.98e+01 e.1.1.1 91235 2axwA 134 2.30e+01 2b3wA 168 2.31e+01 1ztsA 139 2.50e+01 1u6tA 121 2.51e+01 2etxA 209 2.59e+01 2b7eA 59 2.67e+01 1sqsA 242 2.67e+01 c.23.5.5 98968 1cf7B 95 2.69e+01 1cf7B a.4.5.17 16152 1snlA 103 2.87e+01 a.39.1.7 105820 1xedA 117 2.92e+01 1vkuA 100 2.95e+01 a.28.1.1 108690 2as9A 210 2.96e+01 1pqxA 91 2.97e+01 d.267.1.1 104296 2fj6A 82 3.06e+01 1ktjA 129 3.07e+01 b.1.18.7 72974 1n91A 108 3.08e+01 d.206.1.1 80326 1zx5A 300 3.09e+01 1rr7A 129 3.30e+01 a.4.1.14 105075 1zhvA 134 3.35e+01 2bv9A 290 3.41e+01 1urnA 97 3.46e+01 1urnA d.58.7.1 39153 1nu4A 97 3.49e+01 d.58.7.1 80731 1o7dE 126 3.62e+01 1jhfA 202 3.64e+01 a.4.5.2,b.87.1.1 63057,63058 2fdrA 229 3.65e+01 1a0rP 245 3.69e+01 1b9yC c.47.1.6 33054 1lwjA 441 3.72e+01 b.71.1.1,c.1.8.1 74303,74304 1mzgA 146 3.74e+01 d.224.1.1 79696 1u6bA 98 3.75e+01 d.58.7.1 107703 1q48A 134 3.82e+01 d.224.1.2 95783 5pal 109 3.91e+01 1a75A a.39.1.4 17215 1yf9A 171 3.93e+01 2d3jA 157 3.98e+01 2f4mA 295 4.03e+01 1ddf 127 4.06e+01 1ddf a.77.1.2 18423 1qhlA 227 4.19e+01 1qhlA c.37.1.12 32382 1bby 69 4.21e+01 2bby a.4.5.15 16149 1e0wA 313 4.24e+01 1taxA c.1.8.3 59150 1gsoA 431 4.42e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1mdc 133 4.43e+01 1hmt b.60.1.2 27198 2flsA 132 4.52e+01 2bwbA 46 4.53e+01 1tzaA 134 4.59e+01 b.1.23.1 107468 1nhcA 336 4.65e+01 b.80.1.3 91879 2bg5A 324 4.71e+01 1tiqA 180 4.77e+01 d.108.1.1 107010 1quqB 121 4.85e+01 1quqB b.40.4.3 25305 1vd2A 89 4.94e+01 d.15.2.2 108517 1vqoI 162 4.96e+01 1sek 378 5.30e+01 1sek e.1.1.1 42675 1egiA 147 5.32e+01 1eggA d.169.1.1 42331 1dkuA 317 5.33e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1kq3A 376 5.42e+01 e.22.1.2 68790 2br9A 234 5.43e+01 1qopB 396 5.46e+01 2tysB c.79.1.1 35270 1agjA 242 5.58e+01 1agjA b.47.1.1 25827 1exg 110 5.62e+01 1exg b.2.2.1 22387 2a33A 215 5.69e+01 1oiaA 95 5.81e+01 d.58.7.1 87051 1exrA 148 5.84e+01 1cll a.39.1.5 17299 2gw6A 123 5.84e+01 1rwiA 270 5.85e+01 b.68.9.1 97987 1v0lA 313 5.86e+01 c.1.8.3 108207 1a53 247 6.07e+01 1a53 c.1.2.4 28564 1in0A 163 6.12e+01 d.58.49.1,d.58.49.1 83694,83695 1jf2A 195 6.19e+01 1ej3A a.39.1.5 62930 1igs 248 6.32e+01 1a53 c.1.2.4 28565 1od8A 313 6.41e+01 c.1.8.3 86838 1zpsA 138 6.56e+01 1wr1B 58 6.82e+01 2cu3A 64 6.89e+01 1ygtA 111 6.94e+01 1knzA 164 7.00e+01 e.34.1.1 68709 2aw2A 120 7.03e+01 1vqoL 165 7.04e+01 1pxeA 63 7.10e+01 g.73.1.1 95286 2b33A 140 7.41e+01 1ywlA 96 7.51e+01 1kyqA 274 7.73e+01 c.2.1.11,e.37.1.1 73281,73282 1yh6A 179 7.82e+01 1e94F 449 7.87e+01 1do0A c.37.1.20 32443 1jj2K 164 7.91e+01 1ffkJ c.12.1.1 63096 1s72L 165 7.92e+01 c.12.1.1 105331 1z6oA 212 8.17e+01 1jx7A 117 8.20e+01 c.114.1.1 77195 1kshA 186 8.22e+01 c.37.1.8 72914 1f8rA 498 8.26e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1l1sA 113 8.35e+01 c.114.1.1 73484 1g6gA 127 8.40e+01 1g6gA b.26.1.2 23916 1wwhA 119 8.40e+01 1utiA 58 8.42e+01 b.34.2.1 99962 1s72I 162 8.44e+01 a.4.7.1 105328 2f60K 64 8.53e+01 1pbgA 468 8.70e+01 1e70M c.1.8.4 28946 1ucrA 78 8.72e+01 a.4.5.45 99188 1vdyA 140 8.84e+01 1gggA 226 8.86e+01 1lst c.94.1.1 35817 1xwiA 322 8.92e+01 2aefA 234 8.95e+01