# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zynA 202 1.90e-01 1hyuA 521 2.75e-01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1dyqA 234 6.11e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1igs 248 6.83e-01 1a53 c.1.2.4 28565 1a53 247 8.54e-01 1a53 c.1.2.4 28564 2c3zA 222 1.38e+00 2fvtA 135 2.65e+00 1ma3A 253 2.86e+00 c.31.1.5 78883 2rslA 140 3.07e+00 2rslA c.53.1.1 33345 1souA 194 3.11e+00 c.124.1.6 105858 1iz5A 249 3.34e+00 d.131.1.2,d.131.1.2 83834,83835 1u2xA 474 4.41e+00 c.72.1.3 107622 1my6A 199 4.48e+00 a.2.11.1,d.44.1.1 85232,85233 1eceA 358 5.02e+00 1eceA c.1.8.3 28813 1m93A 55 5.23e+00 e.1.1.1 91235 1rwiA 270 7.16e+00 b.68.9.1 97987 1qhlA 227 7.46e+00 1qhlA c.37.1.12 32382 1ockA 412 7.50e+00 c.117.1.1 86802 2d1uA 104 7.94e+00 2ewrA 170 9.34e+00 2fclA 169 9.34e+00 1q59A 172 9.70e+00 f.1.4.1 95881 1fl2A 310 9.95e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 1v30A 124 1.01e+01 1sqsA 242 1.05e+01 c.23.5.5 98968 1rwzA 245 1.11e+01 d.131.1.2,d.131.1.2 98005,98006 1od8A 313 1.14e+01 c.1.8.3 86838 1xwvA 129 1.19e+01 1j5vA 351 1.21e+01 c.72.1.1 71585 1mixA 206 1.27e+01 a.11.2.1,b.55.1.5 79166,79167 1e0wA 313 1.29e+01 1taxA c.1.8.3 59150 1v0lA 313 1.29e+01 c.1.8.3 108207 2axwA 134 1.37e+01 2awpA 198 1.52e+01 1thg 544 1.53e+01 1thg c.69.1.17 34763 2a2pA 129 1.55e+01 2cxcA 144 1.56e+01 1c7nA 399 1.61e+01 1d2fA c.67.1.3 34413 1es6A 296 1.64e+01 1es6A b.31.1.1,b.31.1.1 83048,83049 1k38A 254 1.67e+01 e.3.1.1 84303 1wspA 84 1.76e+01 2pil 159 1.83e+01 2pil d.24.1.1 38376 1sr4B 261 1.86e+01 d.151.1.1 105949 1tzaA 134 1.88e+01 b.1.23.1 107468 1h2cA 140 1.89e+01 b.31.1.1 83462 1ltlA 279 2.03e+01 b.40.4.11 84701 2gw6A 123 2.09e+01 1tf1A 198 2.11e+01 d.110.2.2 106826 1repC 251 2.17e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1ryjA 70 2.19e+01 d.15.3.2 98104 1bby 69 2.24e+01 2bby a.4.5.15 16149 1o58A 303 2.25e+01 c.79.1.1 92491 1lwjA 441 2.36e+01 b.71.1.1,c.1.8.1 74303,74304 1ri5A 298 2.40e+01 c.66.1.34 97502 1tr9A 341 2.42e+01 1mm4A 170 2.43e+01 f.4.1.2 79294 1nxiA 132 2.47e+01 d.58.47.1 86381 1yiyA 429 2.68e+01 1tlk 154 2.69e+01 1tlk b.1.1.4 21707 1ur1A 378 2.70e+01 c.1.8.3 99804 1d2oA 187 2.71e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1g8lA 411 2.75e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1a0rP 245 2.77e+01 1b9yC c.47.1.6 33054 1fhgA 154 2.79e+01 1tlk b.1.1.4 21706 1t64A 377 2.82e+01 c.42.1.2 106543 1vqoI 162 2.96e+01 1vfsA 386 2.98e+01 b.49.2.2,c.1.6.1 108584,108585 1xedA 117 3.00e+01 1pnsC 206 3.03e+01 i.1.1.1 88170 1id0A 152 3.08e+01 d.122.1.3 66111 2aioA 269 3.26e+01 1smlA 269 3.27e+01 1smlA d.157.1.1 42053 2aw2A 120 3.35e+01 2g9iA 249 3.41e+01 1m07A 111 3.45e+01 d.5.1.1 78328 1xttA 216 3.45e+01 1flcA 432 3.47e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1h72C 296 3.50e+01 d.14.1.5,d.58.26.1 60712,60713 1ddf 127 3.54e+01 1ddf a.77.1.2 18423 1xhfA 123 3.69e+01 1evuA 731 3.74e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1exg 110 3.75e+01 1exg b.2.2.1 22387 1tiqA 180 3.77e+01 d.108.1.1 107010 1ydmA 187 3.85e+01 1qlmA 316 3.98e+01 1qlmA d.147.1.1 41765 1ej0A 180 4.04e+01 1ej0A c.66.1.2 34179 1t9bA 677 4.05e+01 1xfcA 384 4.09e+01 1a99A 344 4.15e+01 1pot c.94.1.1 35812 1cby 259 4.19e+01 1cby d.103.1.1 40705 1iscA 192 4.20e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1pqxA 91 4.22e+01 d.267.1.1 104296 2adbA 148 4.27e+01 1ri6A 343 4.28e+01 b.69.11.1 97503 1fecA 490 4.30e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1z0wA 207 4.34e+01 1fwkA 296 4.39e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 1nijA 318 4.43e+01 c.37.1.10,d.237.1.1 85741,85742 1qi9A 556 4.48e+01 1qhbA a.111.1.2 19053 1o0pA 104 4.50e+01 d.58.7.1 86535 2bg5A 324 4.52e+01 2f4mA 295 4.54e+01 2g6tA 306 4.54e+01 1ktjA 129 4.70e+01 b.1.18.7 72974 2b33A 140 4.71e+01 1xsqA 168 4.81e+01 1yizA 429 4.90e+01 1ygs 234 4.95e+01 1ygs b.26.1.1 23907 1xewY 172 4.97e+01 1ex0A 731 4.97e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1xkiA 162 5.02e+01 1pbjA 125 5.15e+01 d.37.1.1,d.37.1.1 94414,94415 1tq5A 242 5.16e+01 1p8kZ 254 5.21e+01 d.95.2.1,d.95.2.1 94361,94362 1pbgA 468 5.25e+01 1e70M c.1.8.4 28946 1pp0A 199 5.30e+01 d.103.1.1 104211 2g0uA 92 5.37e+01 2bbkL 125 5.46e+01 2bbkL g.21.1.1 44882 1c52 131 5.53e+01 1c52 a.3.1.1 15810 1njhA 119 5.61e+01 b.128.1.1 85787 2arcA 164 5.75e+01 2arcA b.82.4.1 28148 1wmhA 89 5.76e+01 1urnA 97 5.77e+01 1urnA d.58.7.1 39153 2b7eA 59 5.83e+01 2fj6A 82 5.96e+01 1h8vA 218 6.08e+01 2nlrA b.29.1.11 60795 2czrA 226 6.14e+01 1vddA 228 6.16e+01 e.49.1.1 108519 1oa2A 218 6.19e+01 b.29.1.11 86721 1q48A 134 6.20e+01 d.224.1.2 95783 1cc1S 283 6.25e+01 2frvA e.19.1.1 43313 1of8A 370 6.38e+01 c.1.10.4 92819 1bia 321 6.39e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1nq6A 302 6.39e+01 c.1.8.3 92046 1vkuA 100 6.46e+01 a.28.1.1 108690 2gfgA 193 6.51e+01 1rovA 857 6.58e+01 a.119.1.1,b.12.1.1 97674,97675 2cygA 312 6.67e+01 1sek 378 6.79e+01 1sek e.1.1.1 42675 1l9xA 315 6.79e+01 c.23.16.1 73762 2fh7A 595 6.79e+01 1qg8A 255 6.82e+01 1qg8A c.68.1.1 34505 1m7vA 363 7.07e+01 d.174.1.1 78748 1x8dA 104 7.10e+01 1larA 575 7.37e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1n8kA 374 7.60e+01 b.35.1.2,c.2.1.1 80298,80299 1k0hA 117 7.62e+01 b.106.1.2 71975 1g6gA 127 7.63e+01 1g6gA b.26.1.2 23916 1hetA 374 7.68e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 2flsA 132 7.87e+01 2ohxA 374 7.90e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1wdnA 226 7.90e+01 1lst c.94.1.1 35816 1epwA 1290 7.90e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1n91A 108 8.05e+01 d.206.1.1 80326 1ycyA 71 8.18e+01 1ztsA 139 8.24e+01 1c7sA 858 8.27e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1u6tA 121 8.30e+01 1b25A 619 8.47e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1v5tA 90 8.57e+01 d.15.1.1 108385 1zhvA 134 8.58e+01 1regX 122 8.64e+01 1regX d.58.27.1 39406 2axpA 173 8.71e+01 1qavA 90 8.72e+01 1qauA b.36.1.1 24777 1ih8A 271 8.88e+01 2nsyA c.26.2.1 62377 1ljoA 77 8.91e+01 b.38.1.1 73941 1kqpA 271 8.95e+01 c.26.2.1 72883 4uagA 437 8.95e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955