# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0uA 92 3.28e-01 1g4yB 101 7.46e-01 1g4yB f.15.1.1 60251 1v30A 124 1.48e+00 1ztsA 139 1.88e+00 1ma3A 253 2.27e+00 c.31.1.5 78883 2a2pA 129 2.37e+00 1souA 194 2.94e+00 c.124.1.6 105858 1u6tA 121 3.75e+00 2f4mA 295 4.41e+00 1nxiA 132 4.80e+00 d.58.47.1 86381 1q59A 172 5.45e+00 f.1.4.1 95881 1ddf 127 5.49e+00 1ddf a.77.1.2 18423 1wspA 84 5.50e+00 2d1uA 104 5.59e+00 1svpA 161 5.72e+00 1svpA b.47.1.3 26384 1hyuA 521 6.32e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2axwA 134 6.34e+00 1y96B 85 6.72e+00 1d2oA 187 7.01e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1wmhA 89 7.25e+00 1hrkA 359 8.02e+00 1hrkA c.92.1.1 61228 2fj6A 82 8.13e+00 1n91A 108 8.87e+00 d.206.1.1 80326 2b3wA 168 1.09e+01 2f60K 64 1.22e+01 1pu1A 94 1.25e+01 d.266.1.1 104307 2aw2A 120 1.29e+01 2fvtA 135 1.35e+01 1vd2A 89 1.51e+01 d.15.2.2 108517 2etxA 209 1.52e+01 1v5nA 89 1.67e+01 g.49.1.3 108380 1ppjE 196 1.69e+01 b.33.1.1,f.23.12.1 104260,104261 1ywlA 96 1.69e+01 1qvcA 145 1.76e+01 3ullA b.40.4.3 25284 1kn7A 78 1.76e+01 j.12.1.1 84413 2adoA 196 1.81e+01 1ywmA 200 1.87e+01 1fjgC 239 1.89e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1repC 251 1.90e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1mm4A 170 1.90e+01 f.4.1.2 79294 1xwvA 129 1.91e+01 1tzaA 134 2.02e+01 b.1.23.1 107468 1eg2A 319 2.05e+01 1eg2A c.66.1.11 34249 1zvdA 380 2.05e+01 1f3uB 171 2.16e+01 1f3uB b.65.1.1 27525 1pnsC 206 2.19e+01 i.1.1.1 88170 2ez6A 221 2.26e+01 1j0fA 100 2.26e+01 c.47.1.14 90739 1ktjA 129 2.31e+01 b.1.18.7 72974 1zynA 202 2.41e+01 1z6oA 212 2.64e+01 1q48A 134 2.85e+01 d.224.1.2 95783 1wfeA 86 2.88e+01 1cf7B 95 2.94e+01 1cf7B a.4.5.17 16152 1mzgA 146 2.98e+01 d.224.1.1 79696 1bby 69 3.03e+01 2bby a.4.5.15 16149 1xedA 117 3.32e+01 1ygtA 111 3.32e+01 1o7dE 126 3.56e+01 1q38A 89 3.64e+01 b.1.2.1 95663 1w2yA 229 3.81e+01 a.204.1.1 109140 1t0hA 132 3.96e+01 b.34.2.1 106207 1uheA 97 4.12e+01 1vlqA 337 4.14e+01 c.69.1.25 108848 1zhvA 134 4.20e+01 1t1vA 93 4.28e+01 c.47.1.14 106278 1k0hA 117 4.31e+01 b.106.1.2 71975 2g3aA 152 4.33e+01 1q9uA 130 4.44e+01 d.129.7.1 96314 2bpa1 426 4.58e+01 2bpa1 1oksA 56 4.68e+01 a.8.5.1 93271 2axpA 173 4.90e+01 1snlA 103 4.91e+01 a.39.1.7 105820 1yg6A 193 5.01e+01 1v0dA 329 5.26e+01 d.4.1.7 108204 1jhfA 202 5.35e+01 a.4.5.2,b.87.1.1 63057,63058 1yzxA 226 5.55e+01 1in0A 163 5.56e+01 d.58.49.1,d.58.49.1 83694,83695 1g8lA 411 5.89e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1s72I 162 5.98e+01 a.4.7.1 105328 2cu3A 64 6.02e+01 1ail 73 6.18e+01 1ail a.16.1.1 16381 1gkzA 388 6.26e+01 a.29.5.1,d.122.1.4 65268,65269 2b7eA 59 6.36e+01 1yukA 103 6.37e+01 1f66C 128 6.38e+01 1aoiC a.22.1.1 16442 1z57A 339 6.44e+01 2bv9A 290 6.60e+01 1yu1A 381 6.65e+01 1aisA 182 6.68e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1m07A 111 6.73e+01 d.5.1.1 78328 1u6bA 98 6.81e+01 d.58.7.1 107703 1oiaA 95 7.11e+01 d.58.7.1 87051 1tlk 154 7.37e+01 1tlk b.1.1.4 21707 1yu4A 381 7.41e+01 1pqxA 91 7.48e+01 d.267.1.1 104296 1onqA 283 7.50e+01 b.1.1.2,d.19.1.1 93365,93366 1yu2A 381 7.53e+01 1hqz1 141 7.62e+01 1fhgA 154 7.63e+01 1tlk b.1.1.4 21706 1yu3A 381 7.67e+01 1x3qA 57 7.67e+01 1pxeA 63 7.76e+01 g.73.1.1 95286 1yl37 47 7.80e+01 1vor4 46 7.88e+01 1v4eA 299 7.99e+01 a.128.1.1 100296 1yu0A 381 8.10e+01 1n13B 113 8.41e+01 1gyxA 76 8.51e+01 d.80.1.1 76387 1zdzA 302 8.54e+01 1u3eM 174 8.68e+01 d.4.1.3,d.285.1.1 107640,107641 1vqoI 162 8.72e+01 1gwmA 153 8.94e+01 b.18.1.19 83348