Best Alignments for T0309

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y96B/T0309-1y96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0309-1y96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8282e+002.90e-05
1hyuA/T0309-1hyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hyuA/T0309-1hyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1131e+001.72e+00 1hyuA c.3.1.5
c.3.1.5
c.47.1.2
c.47.1.2
1repC/T0309-1repC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1repC/T0309-1repC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8530e+002.46e-02 1repC a.4.5.10
a.4.5.10
1esfA/T0309-1esfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1esfA/T0309-1esfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9569e+005.74e+00 3seb b.40.2.2
d.15.6.1
1zynA/T0309-1zynA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zynA/T0309-1zynA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6114e+002.73e+01
1d2oA/T0309-1d2oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d2oA/T0309-1d2oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9201e+006.59e-02 1d2oA b.3.5.1
b.3.5.1
1wmhB/T0309-1wmhB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wmhB/T0309-1wmhB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2037e+011.23e-05
1urnA/T0309-1urnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1urnA/T0309-1urnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4027e+011.62e-03 1urnA d.58.7.1
2rslA/T0309-2rslA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rslA/T0309-2rslA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6014e+012.11e+02 2rslA c.53.1.1
1xewY/T0309-1xewY-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xewY/T0309-1xewY-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7749e+015.18e-03

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001