Best Alignments for T0309

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3866e+002.07e+00 3seb b.40.2.2
d.15.6.1
1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8843e+001.32e-02 1repC a.4.5.10
a.4.5.10
1d2oA/T0309-1d2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d2oA/T0309-1d2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9772e+003.53e-02 1d2oA b.3.5.1
b.3.5.1
1y96B/T0309-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0309-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9229e+001.56e-05
2rslA/T0309-2rslA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rslA/T0309-2rslA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6008e+001.13e+02 2rslA c.53.1.1
1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8427e+001.50e-01 e.1.1.1
2fclA/T0309-2fclA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fclA/T0309-2fclA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0245e+005.50e+01
1wspA/T0309-1wspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wspA/T0309-1wspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1336e+001.62e+02
1iz5A/T0309-1iz5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iz5A/T0309-1iz5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2578e+014.98e+00 d.131.1.2
d.131.1.2
1sqsA/T0309-1sqsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sqsA/T0309-1sqsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4607e+012.26e+00 c.23.5.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001