# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2oA 187 3.80e-01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1repC 251 8.34e-01 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 2.23e+00 1wspA 84 2.58e+00 1aisA 182 2.64e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1y96B 85 3.43e+00 1svpA 161 3.92e+00 1svpA b.47.1.3 26384 2rslA 140 4.26e+00 2rslA c.53.1.1 33345 1dyqA 234 4.61e+00 3seb b.40.2.2,d.15.6.1 59140,59141 2fclA 169 5.33e+00 2etxA 209 5.63e+00 1hrkA 359 5.83e+00 1hrkA c.92.1.1 61228 1m93A 55 7.43e+00 e.1.1.1 91235 1ma3A 253 9.15e+00 c.31.1.5 78883 1cf7B 95 9.47e+00 1cf7B a.4.5.17 16152 1rr7A 129 1.05e+01 a.4.1.14 105075 2bwbA 46 1.09e+01 1vkuA 100 1.12e+01 a.28.1.1 108690 1iz5A 249 1.17e+01 d.131.1.2,d.131.1.2 83834,83835 1o7dE 126 1.25e+01 1agjA 242 1.27e+01 1agjA b.47.1.1 25827 1ydmA 187 1.28e+01 1kqpA 271 1.34e+01 c.26.2.1 72883 1mdc 133 1.46e+01 1hmt b.60.1.2 27198 1utiA 58 1.50e+01 b.34.2.1 99962 2b7eA 59 1.50e+01 1z6oA 212 1.65e+01 1x4tA 92 1.68e+01 1nu4A 97 1.69e+01 d.58.7.1 80731 2d3jA 157 1.77e+01 2gw6A 123 1.83e+01 1kq3A 376 1.84e+01 e.22.1.2 68790 1zx5A 300 2.03e+01 1vqoL 165 2.09e+01 2flsA 132 2.12e+01 1kyqA 274 2.14e+01 c.2.1.11,e.37.1.1 73281,73282 2fdrA 229 2.23e+01 1bby 69 2.28e+01 2bby a.4.5.15 16149 1knzA 164 2.34e+01 e.34.1.1 68709 1sqsA 242 2.43e+01 c.23.5.5 98968 1gsoA 431 2.63e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1dkuA 317 2.70e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1qopB 396 2.70e+01 2tysB c.79.1.1 35270 1zpsA 138 2.79e+01 5pal 109 2.79e+01 1a75A a.39.1.4 17215 1wwhA 119 2.86e+01 2as9A 210 2.89e+01 1ucrA 78 3.25e+01 a.4.5.45 99188 1qhlA 227 3.32e+01 1qhlA c.37.1.12 32382 1quqB 121 3.32e+01 1quqB b.40.4.3 25305 1in0A 163 3.40e+01 d.58.49.1,d.58.49.1 83694,83695 1gyxA 76 3.44e+01 d.80.1.1 76387 1exrA 148 3.66e+01 1cll a.39.1.5 17299 1vr8A 142 3.70e+01 1nhcA 336 3.71e+01 b.80.1.3 91879 1w2yA 229 3.92e+01 a.204.1.1 109140 1ukkA 142 4.03e+01 d.227.1.1 99491 1exg 110 4.24e+01 1exg b.2.2.1 22387 1dj7B 75 4.26e+01 1dj7B b.34.4.3 24598 1yf9A 171 4.36e+01 1bn8A 420 4.40e+01 1pcl b.80.1.1 28022 1tt7A 330 4.49e+01 1sek 378 4.64e+01 1sek e.1.1.1 42675 1zthA 258 4.77e+01 1ft5A 211 4.85e+01 1bvb a.138.1.3 19681 2a33A 215 5.00e+01 2g6tA 306 5.01e+01 1v0lA 313 5.10e+01 c.1.8.3 108207 1s55A 156 5.23e+01 2a6vA 226 5.33e+01 1tiqA 180 5.40e+01 d.108.1.1 107010 1ulkA 126 5.67e+01 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 1vqoI 162 5.75e+01 2bg5A 324 5.91e+01 1wmhA 89 6.01e+01 1c52 131 6.19e+01 1c52 a.3.1.1 15810 1p5vA 235 6.30e+01 b.1.11.1,b.7.2.1 87812,87813 2afbA 351 6.49e+01 1kshA 186 6.54e+01 c.37.1.8 72914 2bz6L 53 6.75e+01 2gfgA 193 6.79e+01 1q3lA 69 6.89e+01 2g1uA 155 7.02e+01 1n8jA 186 7.07e+01 c.47.1.10 85401 1njhA 119 7.07e+01 b.128.1.1 85787 1vq3A 94 7.29e+01 1rqtA 37 7.30e+01 a.108.1.1 97771 1s0pA 176 7.33e+01 a.192.1.1 98300 1xcbA 211 7.48e+01 a.4.5.38,c.2.1.12 109552,109553 1xn5A 146 7.59e+01 1k0hA 117 7.74e+01 b.106.1.2 71975 1s9rA 410 7.85e+01 d.126.1.4 98758 1e9rA 437 7.88e+01 c.37.1.11 64827 1g79A 218 7.94e+01 1ci0A b.45.1.1 25752 2br9A 234 7.97e+01 1k6kA 143 7.97e+01 a.174.1.1 77274 1wdnA 226 7.99e+01 1lst c.94.1.1 35816 1xiwA 105 8.48e+01 1dnlA 199 8.76e+01 1ci0A b.45.1.1 25753 2f6hX 419 8.82e+01 2aefA 234 8.85e+01 1vrmA 325 8.87e+01 1t0yA 122 8.97e+01 d.15.1.1 99066 4uagA 437 8.99e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955