# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 3.85e-01 3seb b.40.2.2,d.15.6.1 59140,59141 2rslA 140 1.04e+00 2rslA c.53.1.1 33345 1iz5A 249 2.83e+00 d.131.1.2,d.131.1.2 83834,83835 1xn5A 146 3.19e+00 1m93A 55 3.50e+00 e.1.1.1 91235 1sqsA 242 4.52e+00 c.23.5.5 98968 2fclA 169 4.89e+00 1qhlA 227 5.52e+00 1qhlA c.37.1.12 32382 2afbA 351 5.67e+00 1ma3A 253 7.58e+00 c.31.1.5 78883 1c7nA 399 9.94e+00 1d2fA c.67.1.3 34413 1ex0A 731 9.94e+00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1repC 251 1.01e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1v0lA 313 1.03e+01 c.1.8.3 108207 1rwzA 245 1.09e+01 d.131.1.2,d.131.1.2 98005,98006 2gw6A 123 1.11e+01 1d2oA 187 1.15e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1wspA 84 1.18e+01 1k38A 254 1.28e+01 e.3.1.1 84303 1sr4B 261 1.46e+01 d.151.1.1 105949 2cxcA 144 1.51e+01 1yiyA 429 1.52e+01 1fhgA 154 1.59e+01 1tlk b.1.1.4 21706 1mixA 206 1.67e+01 a.11.2.1,b.55.1.5 79166,79167 1ydmA 187 1.85e+01 1bby 69 1.87e+01 2bby a.4.5.15 16149 1ur1A 378 1.90e+01 c.1.8.3 99804 1qlmA 316 1.92e+01 1qlmA d.147.1.1 41765 1ri5A 298 1.93e+01 c.66.1.34 97502 1exg 110 1.99e+01 1exg b.2.2.1 22387 1vqoI 162 2.05e+01 1xwvA 129 2.07e+01 1tf1A 198 2.08e+01 d.110.2.2 106826 1tiqA 180 2.09e+01 d.108.1.1 107010 1e9rA 437 2.15e+01 c.37.1.11 64827 1yizA 429 2.38e+01 1xttA 216 2.40e+01 1n8kA 374 2.40e+01 b.35.1.2,c.2.1.1 80298,80299 1c52 131 2.50e+01 1c52 a.3.1.1 15810 1vkuA 100 2.52e+01 a.28.1.1 108690 1b25A 619 2.55e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2g6tA 306 2.58e+01 1eceA 358 2.62e+01 1eceA c.1.8.3 28813 1h72C 296 2.68e+01 d.14.1.5,d.58.26.1 60712,60713 1x8dA 104 2.72e+01 2gfgA 193 2.75e+01 2b7eA 59 2.80e+01 1cby 259 2.84e+01 1cby d.103.1.1 40705 1njhA 119 2.89e+01 b.128.1.1 85787 1xfcA 384 2.99e+01 1bia 321 3.19e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2g9iA 249 3.22e+01 1fl2A 310 3.24e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1a99A 344 3.29e+01 1pot c.94.1.1 35812 1m07A 111 3.38e+01 d.5.1.1 78328 1vr7A 142 3.39e+01 1pp0A 199 3.45e+01 d.103.1.1 104211 4uagA 437 3.46e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2bg5A 324 3.49e+01 1xewY 172 3.56e+01 1nijA 318 3.57e+01 c.37.1.10,d.237.1.1 85741,85742 1o58A 303 3.66e+01 c.79.1.1 92491 1h09A 338 3.88e+01 b.109.1.1,c.1.8.8 83420,83421 1a53 247 3.88e+01 1a53 c.1.2.4 28564 1zp4A 304 3.89e+01 1of8A 370 3.95e+01 c.1.10.4 92819 1y96B 85 4.02e+01 1qg8A 255 4.03e+01 1qg8A c.68.1.1 34505 1u3wA 374 4.06e+01 1vbvA 105 4.13e+01 1kqpA 271 4.13e+01 c.26.2.1 72883 1qi9A 556 4.24e+01 1qhbA a.111.1.2 19053 2fh7A 595 4.28e+01 1e0tA 470 4.28e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1ej0A 180 4.29e+01 1ej0A c.66.1.2 34179 1nq6A 302 4.32e+01 c.1.8.3 92046 1z0wA 207 4.52e+01 2amhA 207 4.62e+01 1pbjA 125 4.66e+01 d.37.1.1,d.37.1.1 94414,94415 1vddA 228 4.83e+01 e.49.1.1 108519 1f5jA 199 4.93e+01 1axkA b.29.1.11 24342 2etxA 209 5.04e+01 2ab5A 269 5.04e+01 1o57A 291 5.11e+01 a.4.5.40,c.61.1.1 92483,92484 5nul 138 5.14e+01 5nul c.23.5.1 31191 1ca1 370 5.14e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 3seb 238 5.16e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2flsA 132 5.18e+01 1oa2A 218 5.38e+01 b.29.1.11 86721 1qavA 90 5.41e+01 1qauA b.36.1.1 24777 1o1zA 234 5.43e+01 c.1.18.3 86555 1id0A 152 5.47e+01 d.122.1.3 66111 1wmhB 86 5.51e+01 1sek 378 5.66e+01 1sek e.1.1.1 42675 1c7qA 445 5.73e+01 2pgi c.80.1.2 35307 1ri6A 343 6.01e+01 b.69.11.1 97503 1szoA 257 6.03e+01 c.14.1.3 106164 7a3hA 303 6.04e+01 7a3hA c.1.8.3 28817 2culA 232 6.06e+01 1reqB 637 6.08e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1bn8A 420 6.18e+01 1pcl b.80.1.1 28022 1no5A 114 6.23e+01 d.218.1.5 92014 1xkiA 162 6.27e+01 1quqB 121 6.34e+01 1quqB b.40.4.3 25305 1hqz1 141 6.40e+01 1vqzA 341 6.68e+01 1c7sA 858 6.86e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1r1a1 287 7.03e+01 1aym1 1wmqA 147 7.05e+01 1wpuA 147 7.08e+01 1wdnA 226 7.10e+01 1lst c.94.1.1 35816 1b6g 310 7.19e+01 1b6g c.69.1.8 34661 1mo9A 523 7.19e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2tpt 440 7.22e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 2czrA 226 7.22e+01 1h7zA 194 7.35e+01 1qhvA b.21.1.1 60733 8rucI 123 7.38e+01 1rboC d.73.1.1 39629 2g50A 530 7.44e+01 1o98A 511 7.49e+01 c.105.1.1,c.76.1.3 86684,86685 1g0sA 209 7.55e+01 1g0sA d.113.1.1 60187 1fzqA 181 7.67e+01 1hurA c.37.1.8 32060 1tljA 213 7.69e+01 d.282.1.1 107126 1zpvA 91 7.71e+01 1nf3C 128 7.80e+01 b.36.1.1 85596 1wcdJ 441 7.81e+01 1fh9A 312 7.84e+01 1taxA c.1.8.3 28913 1o6dA 163 7.97e+01 c.116.1.3 92567 2cygA 312 7.98e+01 1regX 122 8.02e+01 1regX d.58.27.1 39406 1r77A 103 8.10e+01 1g6gA 127 8.14e+01 1g6gA b.26.1.2 23916 2gh1A 301 8.24e+01 1woqA 267 8.40e+01 c.55.1.10,c.55.1.10 109462,109463 2aq4A 434 8.47e+01 1ockA 412 8.56e+01 c.117.1.1 86802 1l9xA 315 8.60e+01 c.23.16.1 73762 1fg7A 356 8.65e+01 1gewA c.67.1.1 59819 1a8q 274 8.74e+01 1brt c.69.1.12 34702 2hvm 273 8.77e+01 1cnv c.1.8.5 28985 1qopB 396 8.85e+01 2tysB c.79.1.1 35270 1vr4A 103 8.88e+01