# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 1.74e-01 3seb b.40.2.2,d.15.6.1 59140,59141 2rslA 140 1.42e+00 2rslA c.53.1.1 33345 1m93A 55 1.49e+00 e.1.1.1 91235 1iz5A 249 1.57e+00 d.131.1.2,d.131.1.2 83834,83835 1xn5A 146 1.79e+00 1qhlA 227 2.96e+00 1qhlA c.37.1.12 32382 2fclA 169 4.00e+00 1repC 251 5.01e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2cxcA 144 5.35e+00 1sqsA 242 5.78e+00 c.23.5.5 98968 1ex0A 731 6.55e+00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1rwzA 245 6.73e+00 d.131.1.2,d.131.1.2 98005,98006 1o58A 303 7.05e+00 c.79.1.1 92491 1tf1A 198 7.08e+00 d.110.2.2 106826 2bg5A 324 7.22e+00 2afbA 351 7.46e+00 1v0lA 313 8.24e+00 c.1.8.3 108207 1vqzA 341 8.37e+00 1y96B 85 8.66e+00 1vr4A 103 8.96e+00 1x8dA 104 9.07e+00 1wspA 84 9.73e+00 1ur1A 378 9.82e+00 c.1.8.3 99804 1xewY 172 1.02e+01 1e9rA 437 1.10e+01 c.37.1.11 64827 1ri5A 298 1.12e+01 c.66.1.34 97502 1a53 247 1.15e+01 1a53 c.1.2.4 28564 1cby 259 1.18e+01 1cby d.103.1.1 40705 2gfgA 193 1.20e+01 1reqB 637 1.29e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1n8kA 374 1.31e+01 b.35.1.2,c.2.1.1 80298,80299 1c52 131 1.35e+01 1c52 a.3.1.1 15810 1of8A 370 1.39e+01 c.1.10.4 92819 1fhgA 154 1.40e+01 1tlk b.1.1.4 21706 1tiqA 180 1.51e+01 d.108.1.1 107010 1wmhB 86 1.65e+01 1qavA 90 1.70e+01 1qauA b.36.1.1 24777 1f5jA 199 1.73e+01 1axkA b.29.1.11 24342 1exg 110 1.75e+01 1exg b.2.2.1 22387 2gw6A 123 1.77e+01 1bia 321 1.79e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1qi9A 556 1.81e+01 1qhbA a.111.1.2 19053 1gyxA 76 1.82e+01 d.80.1.1 76387 1tljA 213 1.90e+01 d.282.1.1 107126 1hqz1 141 1.92e+01 1o6dA 163 1.92e+01 c.116.1.3 92567 1h09A 338 1.94e+01 b.109.1.1,c.1.8.8 83420,83421 1vr7A 142 1.94e+01 1k38A 254 1.98e+01 e.3.1.1 84303 1o1zA 234 1.99e+01 c.1.18.3 86555 1ri6A 343 2.02e+01 b.69.11.1 97503 1yiyA 429 2.13e+01 1xttA 216 2.15e+01 1ockA 412 2.15e+01 c.117.1.1 86802 2amhA 207 2.16e+01 1m07A 111 2.17e+01 d.5.1.1 78328 2g6tA 306 2.17e+01 1pyfA 312 2.20e+01 c.1.7.1 95334 1kqpA 271 2.22e+01 c.26.2.1 72883 2aefA 234 2.28e+01 2b7eA 59 2.37e+01 1njhA 119 2.37e+01 b.128.1.1 85787 1qlmA 316 2.40e+01 1qlmA d.147.1.1 41765 1h4gA 207 2.43e+01 b.29.1.11 70863 2ab5A 269 2.47e+01 1eceA 358 2.50e+01 1eceA c.1.8.3 28813 2cxaA 256 2.52e+01 1c7qA 445 2.54e+01 2pgi c.80.1.2 35307 1ej0A 180 2.63e+01 1ej0A c.66.1.2 34179 1b25A 619 2.66e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1dkuA 317 2.73e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1u3wA 374 2.75e+01 1ma3A 253 2.76e+01 c.31.1.5 78883 2g9iA 249 2.76e+01 1sek 378 2.93e+01 1sek e.1.1.1 42675 1hdoA 206 2.94e+01 1he2A c.2.1.2 60965 1e0tA 470 2.98e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2etxA 209 3.00e+01 1fzqA 181 3.07e+01 1hurA c.37.1.8 32060 1a99A 344 3.08e+01 1pot c.94.1.1 35812 1pp0A 199 3.11e+01 d.103.1.1 104211 1o57A 291 3.13e+01 a.4.5.40,c.61.1.1 92483,92484 1f2tB 148 3.20e+01 1f2tB 1c7nA 399 3.20e+01 1d2fA c.67.1.3 34413 1wkqA 164 3.31e+01 c.97.1.2 109393 1woqA 267 3.41e+01 c.55.1.10,c.55.1.10 109462,109463 1sr4B 261 3.43e+01 d.151.1.1 105949 2fh7A 595 3.64e+01 8rucI 123 3.64e+01 1rboC d.73.1.1 39629 1mo9A 523 3.65e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1id0A 152 3.65e+01 d.122.1.3 66111 1regX 122 3.66e+01 1regX d.58.27.1 39406 1pbjA 125 3.69e+01 d.37.1.1,d.37.1.1 94414,94415 1zpvA 91 3.70e+01 1g0sA 209 3.71e+01 1g0sA d.113.1.1 60187 1xfcA 384 3.75e+01 1nq6A 302 3.80e+01 c.1.8.3 92046 1tuoA 464 3.83e+01 1tt8A 164 3.88e+01 1vk4A 298 3.90e+01 c.72.1.1 100850 1yizA 429 3.91e+01 1vcvA 226 3.93e+01 1fg7A 356 3.95e+01 1gewA c.67.1.1 59819 1vjpA 394 3.97e+01 c.2.1.3,d.81.1.3 100828,100829 1vddA 228 3.98e+01 e.49.1.1 108519 1zp4A 304 4.06e+01 1vbvA 105 4.06e+01 1vkuA 100 4.12e+01 a.28.1.1 108690 1flcA 432 4.15e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1ta3B 303 4.16e+01 c.1.8.3 106732 1fh9A 312 4.19e+01 1taxA c.1.8.3 28913 1d2oA 187 4.23e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1h7zA 194 4.43e+01 1qhvA b.21.1.1 60733 1xdpA 687 4.49e+01 1bby 69 4.52e+01 2bby a.4.5.15 16149 1w9zA 283 4.62e+01 2flsA 132 4.63e+01 1nf3C 128 4.68e+01 b.36.1.1 85596 1qopB 396 4.71e+01 2tysB c.79.1.1 35270 1t0aA 159 4.72e+01 1h72C 296 4.73e+01 d.14.1.5,d.58.26.1 60712,60713 1i8fA 81 4.75e+01 1i8fA b.38.1.1 61959 1jhsA 188 4.76e+01 d.107.1.1 84172 1te7A 103 4.77e+01 1h2cA 140 4.77e+01 b.31.1.1 83462 2g50A 530 4.81e+01 1wcdJ 441 4.88e+01 1wlyA 333 4.94e+01 1ydyA 356 5.05e+01 2hvm 273 5.06e+01 1cnv c.1.8.5 28985 1no5A 114 5.12e+01 d.218.1.5 92014 1l9xA 315 5.16e+01 c.23.16.1 73762 1oa2A 218 5.18e+01 b.29.1.11 86721 1s0pA 176 5.21e+01 a.192.1.1 98300 1juvA 193 5.28e+01 c.71.1.1 90912 1b6g 310 5.29e+01 1b6g c.69.1.8 34661 2dfkA 402 5.31e+01 1mixA 206 5.41e+01 a.11.2.1,b.55.1.5 79166,79167 1o98A 511 5.49e+01 c.105.1.1,c.76.1.3 86684,86685 2culA 232 5.67e+01 3seb 238 5.75e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1a8q 274 5.78e+01 1brt c.69.1.12 34702 2gvkA 317 5.83e+01 1wouA 123 5.96e+01 c.47.1.16 109471 1e4mM 501 6.01e+01 1e70M c.1.8.4 59226 1zxxA 319 6.04e+01 1zruA 264 6.15e+01 1uc7A 125 6.42e+01 c.47.1.1 99163 2d9rA 104 6.42e+01 1b77A 228 6.46e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1enwA 114 6.50e+01 1enwA a.5.4.1 16291 1vhqA 232 6.53e+01 c.23.16.2 100696 1xkiA 162 6.59e+01 1s29A 92 6.59e+01 a.4.5.46 98373 1ft5A 211 6.60e+01 1bvb a.138.1.3 19681 1g6gA 127 6.69e+01 1g6gA b.26.1.2 23916 2bo4A 397 6.69e+01 1vphA 149 6.79e+01 1g7nA 131 6.84e+01 b.60.1.2 83274 1whbA 157 6.88e+01 1c7sA 858 6.92e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1fl2A 310 6.99e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1ep0A 185 7.03e+01 1dzrA b.82.1.1 28080 1dljA 402 7.12e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1lk2A 274 7.21e+01 b.1.1.2,d.19.1.1 91056,91057 1my6A 199 7.24e+01 a.2.11.1,d.44.1.1 85232,85233 1uxzA 131 7.31e+01 b.18.1.10 100170 2d1pA 140 7.39e+01 1vfsA 386 7.42e+01 b.49.2.2,c.1.6.1 108584,108585 2aq4A 434 7.43e+01 1nijA 318 7.43e+01 c.37.1.10,d.237.1.1 85741,85742 2f6hX 419 7.49e+01 1ne9A 335 7.50e+01 d.108.1.4,d.108.1.4 91839,91840 1ylqA 96 7.54e+01 1duvG 333 7.54e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1bn8A 420 7.54e+01 1pcl b.80.1.1 28022 1vqoI 162 7.55e+01 1wrjA 156 7.56e+01 2tpt 440 7.64e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1u9cA 224 7.68e+01 1l6xA 207 7.69e+01 b.1.1.2,b.1.1.2 73642,73643 1ydmA 187 7.78e+01 1fr3A 67 7.82e+01 1fr3A b.40.6.1 25436 1g291 372 7.91e+01 1g291 1uekA 275 7.92e+01 d.14.1.5,d.58.26.5 88483,88484 1o0yA 260 8.03e+01 c.1.10.1 80756 2ptd 298 8.24e+01 2plc c.1.18.2 29605 1ns5A 155 8.28e+01 c.116.1.3 80705 1xyiA 66 8.38e+01 1wojA 214 8.56e+01 2apoA 357 8.61e+01 1xf1A 926 8.66e+01 1r1a1 287 8.67e+01 1aym1 1m12A 84 8.75e+01 a.64.1.1 84745 2b7nA 273 8.85e+01 1i6lA 328 8.85e+01 c.26.1.1 66041 1u09A 476 8.86e+01 e.8.1.4 107545 1toaA 313 8.88e+01 1toaA c.92.2.2 35598 2bbkL 125 8.89e+01 2bbkL g.21.1.1 44882 1xwvA 129 8.96e+01 1luzA 88 8.98e+01 b.40.4.5 74271