# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zynA 202 4.63e-01 1dyqA 234 5.10e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1hyuA 521 6.95e-01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2rslA 140 1.37e+00 2rslA c.53.1.1 33345 1iz5A 249 3.70e+00 d.131.1.2,d.131.1.2 83834,83835 1xn5A 146 4.18e+00 1m93A 55 4.58e+00 e.1.1.1 91235 1sqsA 242 5.91e+00 c.23.5.5 98968 2fclA 169 6.39e+00 2ewrA 170 6.39e+00 1qhlA 227 7.20e+00 1qhlA c.37.1.12 32382 2afbA 351 7.40e+00 1j5vA 351 7.84e+00 c.72.1.1 71585 1ma3A 253 9.89e+00 c.31.1.5 78883 1evuA 731 9.97e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1od8A 313 1.07e+01 c.1.8.3 86838 1lwjA 441 1.19e+01 b.71.1.1,c.1.8.1 74303,74304 1c7nA 399 1.30e+01 1d2fA c.67.1.3 34413 1ex0A 731 1.30e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1repC 251 1.32e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1v0lA 313 1.34e+01 c.1.8.3 108207 1e0wA 313 1.35e+01 1taxA c.1.8.3 59150 1rwzA 245 1.43e+01 d.131.1.2,d.131.1.2 98005,98006 2gw6A 123 1.45e+01 1d2oA 187 1.50e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1a0rP 245 1.50e+01 1b9yC c.47.1.6 33054 1wspA 84 1.53e+01 1k38A 254 1.67e+01 e.3.1.1 84303 2pil 159 1.81e+01 2pil d.24.1.1 38376 1sr4B 261 1.90e+01 d.151.1.1 105949 2cxcA 144 1.97e+01 1yiyA 429 1.98e+01 1tlk 154 2.03e+01 1tlk b.1.1.4 21707 1fhgA 154 2.07e+01 1tlk b.1.1.4 21706 1mixA 206 2.17e+01 a.11.2.1,b.55.1.5 79166,79167 1pnsC 206 2.23e+01 i.1.1.1 88170 1xhfA 123 2.31e+01 1ydmA 187 2.40e+01 1u2xA 474 2.43e+01 c.72.1.3 107622 1bby 69 2.44e+01 2bby a.4.5.15 16149 1ur1A 378 2.47e+01 c.1.8.3 99804 1p8kZ 254 2.49e+01 d.95.2.1,d.95.2.1 94361,94362 1qlmA 316 2.49e+01 1qlmA d.147.1.1 41765 1ri5A 298 2.51e+01 c.66.1.34 97502 1exg 110 2.59e+01 1exg b.2.2.1 22387 1vqoI 162 2.66e+01 1xwvA 129 2.70e+01 1tf1A 198 2.71e+01 d.110.2.2 106826 1tiqA 180 2.72e+01 d.108.1.1 107010 1e9rA 437 2.80e+01 c.37.1.11 64827 2b33A 140 2.85e+01 1ryjA 70 2.99e+01 d.15.3.2 98104 1yizA 429 3.09e+01 1xttA 216 3.12e+01 1n8kA 374 3.12e+01 b.35.1.2,c.2.1.1 80298,80299 1hetA 374 3.17e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1c52 131 3.25e+01 1c52 a.3.1.1 15810 2ohxA 374 3.27e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1vkuA 100 3.28e+01 a.28.1.1 108690 1b25A 619 3.32e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2g6tA 306 3.36e+01 1eceA 358 3.40e+01 1eceA c.1.8.3 28813 1o0pA 104 3.43e+01 d.58.7.1 86535 1h72C 296 3.49e+01 d.14.1.5,d.58.26.1 60712,60713 1x8dA 104 3.54e+01 2gfgA 193 3.58e+01 2b7eA 59 3.64e+01 1cby 259 3.69e+01 1cby d.103.1.1 40705 1tluA 130 3.73e+01 d.156.1.2 107139 1njhA 119 3.76e+01 b.128.1.1 85787 1xfcA 384 3.89e+01 1urnA 97 3.91e+01 1urnA d.58.7.1 39153 1igs 248 3.97e+01 1a53 c.1.2.4 28565 1pbgA 468 4.09e+01 1e70M c.1.8.4 28946 1bia 321 4.15e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2g9iA 249 4.19e+01 1fl2A 310 4.21e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1a99A 344 4.28e+01 1pot c.94.1.1 35812 1m07A 111 4.40e+01 d.5.1.1 78328 1vr7A 142 4.41e+01 1ygs 234 4.42e+01 1ygs b.26.1.1 23907 1pp0A 199 4.48e+01 d.103.1.1 104211 4uagA 437 4.50e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1ycyA 71 4.52e+01 1fwkA 296 4.54e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 2bg5A 324 4.54e+01 1xewY 172 4.63e+01 1nijA 318 4.64e+01 c.37.1.10,d.237.1.1 85741,85742 1o58A 303 4.76e+01 c.79.1.1 92491 1h09A 338 5.04e+01 b.109.1.1,c.1.8.8 83420,83421 1a53 247 5.04e+01 1a53 c.1.2.4 28564 1zp4A 304 5.06e+01 1of8A 370 5.13e+01 c.1.10.4 92819 1ltlA 279 5.23e+01 b.40.4.11 84701 1y96B 85 5.23e+01 1qg8A 255 5.24e+01 1qg8A c.68.1.1 34505 1u3wA 374 5.28e+01 1ih8A 271 5.33e+01 2nsyA c.26.2.1 62377 1vbvA 105 5.37e+01 1kqpA 271 5.37e+01 c.26.2.1 72883 1b5tA 275 5.42e+01 1b5tA c.1.23.1 29676 1larA 575 5.45e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1qi9A 556 5.51e+01 1qhbA a.111.1.2 19053 2fh7A 595 5.56e+01 1e0tA 470 5.57e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1ej0A 180 5.58e+01 1ej0A c.66.1.2 34179 1nq6A 302 5.61e+01 c.1.8.3 92046 1z0wA 207 5.88e+01 2amhA 207 6.00e+01 1pbjA 125 6.05e+01 d.37.1.1,d.37.1.1 94414,94415 1shsA 147 6.13e+01 1shsA b.15.1.1 23675 1vddA 228 6.28e+01 e.49.1.1 108519 1f5jA 199 6.40e+01 1axkA b.29.1.11 24342 2etxA 209 6.55e+01 2ab5A 269 6.55e+01 2adoA 196 6.58e+01 1o57A 291 6.64e+01 a.4.5.40,c.61.1.1 92483,92484 5nul 138 6.67e+01 5nul c.23.5.1 31191 1ca1 370 6.67e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 3seb 238 6.71e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2flsA 132 6.73e+01 1h8vA 218 6.84e+01 2nlrA b.29.1.11 60795 1oa2A 218 6.99e+01 b.29.1.11 86721 1qavA 90 7.03e+01 1qauA b.36.1.1 24777 1o1zA 234 7.06e+01 c.1.18.3 86555 1id0A 152 7.11e+01 d.122.1.3 66111 1wmhB 86 7.16e+01 1sek 378 7.36e+01 1sek e.1.1.1 42675 1c7qA 445 7.44e+01 2pgi c.80.1.2 35307 2myr 501 7.45e+01 2adbA 148 7.65e+01 1ri6A 343 7.81e+01 b.69.11.1 97503 1szoA 257 7.83e+01 c.14.1.3 106164 1o8uA 257 7.84e+01 c.14.1.3 81194 7a3hA 303 7.84e+01 7a3hA c.1.8.3 28817 2culA 232 7.87e+01 1reqB 637 7.90e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2c3zA 222 7.95e+01 1fc1A 224 7.97e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1bn8A 420 8.04e+01 1pcl b.80.1.1 28022 1no5A 114 8.10e+01 d.218.1.5 92014 1xkiA 162 8.15e+01 1quqB 121 8.24e+01 1quqB b.40.4.3 25305 1hqz1 141 8.32e+01 1ede 310 8.37e+01 1b6g c.69.1.8 34662 1vqzA 341 8.68e+01 1c7sA 858 8.92e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410