Best Alignments for T0309

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y96B/T0309-1y96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0309-1y96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3754e+002.51e-05
1hyuA/T0309-1hyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hyuA/T0309-1hyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8030e+001.91e+00 1hyuA c.3.1.5
c.3.1.5
c.47.1.2
c.47.1.2
1repC/T0309-1repC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1repC/T0309-1repC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3604e+007.60e-03 1repC a.4.5.10
a.4.5.10
1esfA/T0309-1esfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1esfA/T0309-1esfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8860e+003.07e+00 3seb b.40.2.2
d.15.6.1
1zynA/T0309-1zynA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zynA/T0309-1zynA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1696e+002.29e+01
1wmhB/T0309-1wmhB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wmhB/T0309-1wmhB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0882e+011.40e-05
1d2oA/T0309-1d2oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d2oA/T0309-1d2oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2111e+017.41e-01 1d2oA b.3.5.1
b.3.5.1
1urnA/T0309-1urnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1urnA/T0309-1urnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4353e+011.70e-03 1urnA d.58.7.1
1agnA/T0309-1agnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1agnA/T0309-1agnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5973e+011.82e+01 2ohxA b.35.1.2
c.2.1.1
1ghtA/T0309-1ghtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ghtA/T0309-1ghtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6116e+016.17e+03 2rslA c.53.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001