# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y96B 85 1.39e-01 1wmhB 86 6.47e-01 1xewY 172 1.61e+00 2cunA 410 2.02e+00 1fr3A 67 2.29e+00 1fr3A b.40.6.1 25436 1u24A 337 3.28e+00 2etxA 209 3.38e+00 1repC 251 3.46e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1ip9A 85 3.82e+00 1ip9A d.15.2.2 62638 1xn5A 146 4.24e+00 1vp2A 208 4.29e+00 1gk9B 557 4.64e+00 1hqz1 141 4.88e+00 1d4tA 104 5.93e+00 1d4tA d.93.1.1 40537 1gutA 68 6.06e+00 b.40.6.1 65576 1vr7A 142 6.13e+00 1nu4A 97 6.19e+00 d.58.7.1 80731 2d9rA 104 6.53e+00 1s12A 94 6.97e+00 1fhgA 154 7.55e+00 1tlk b.1.1.4 21706 1di2A 69 7.88e+00 1di2A d.50.1.1 38780 1zpvA 91 7.89e+00 1oeyJ 107 7.94e+00 d.15.2.2 92804 1qwlA 505 8.03e+00 e.5.1.1 96483 8rucI 123 8.16e+00 1rboC d.73.1.1 39629 1vhxA 150 8.59e+00 c.55.3.8 100712 2fhzB 108 8.75e+00 1h2cA 140 8.76e+00 b.31.1.1 83462 2g64A 140 9.06e+00 1kjwA 295 9.37e+00 b.34.2.1,c.37.1.1 68643,68644 2frnA 278 9.41e+00 1dyqA 234 9.44e+00 3seb b.40.2.2,d.15.6.1 59140,59141 1nrlA 316 9.46e+00 a.123.1.1 92091 1r6jA 82 1.00e+01 b.36.1.1 97151 1xtoA 311 1.07e+01 1yukB 120 1.14e+01 2gmqA 118 1.17e+01 1x74A 360 1.19e+01 2bkfA 87 1.22e+01 2c1lA 358 1.23e+01 2c7hA 86 1.25e+01 1ylqA 96 1.28e+01 2ewcA 126 1.33e+01 1tt8A 164 1.40e+01 1s4nA 348 1.40e+01 c.68.1.16 98501 1z52A 470 1.44e+01 1qopB 396 1.48e+01 2tysB c.79.1.1 35270 1i8fA 81 1.59e+01 1i8fA b.38.1.1 61959 1yg6A 193 1.60e+01 1wyxA 69 1.69e+01 1f7sA 139 1.73e+01 1cof d.109.1.2 40857 2fclA 169 1.73e+01 1go3E 187 1.74e+01 b.40.4.5,d.230.1.1 83054,83055 1smxA 96 1.75e+01 b.40.4.5 105772 2dfkA 402 1.81e+01 2g6fX 59 1.89e+01 1toaA 313 1.90e+01 1toaA c.92.2.2 35598 2d00A 109 1.91e+01 1aho 64 1.91e+01 1aho g.3.7.1 44127 1wkqA 164 1.91e+01 c.97.1.2 109393 2cu6A 103 1.94e+01 1t0hA 132 1.98e+01 b.34.2.1 106207 1luzA 88 2.01e+01 b.40.4.5 74271 1vr4A 103 2.02e+01 1m5q1 130 2.07e+01 1div 149 2.12e+01 1div d.99.1.1,d.100.1.1 40692,40693 1wmhA 89 2.13e+01 1omzA 293 2.13e+01 c.68.1.15 87093 2fiuA 99 2.18e+01 1ft5A 211 2.32e+01 1bvb a.138.1.3 19681 1ma3A 253 2.38e+01 c.31.1.5 78883 2gw6A 123 2.41e+01 1vkuA 100 2.41e+01 a.28.1.1 108690 1lq9A 112 2.46e+01 d.58.4.3 78129 1x8dA 104 2.46e+01 1c9oA 66 2.47e+01 1mjc b.40.4.5 25325 1segA 64 2.55e+01 g.3.7.1 105453 1oj4A 283 2.56e+01 d.14.1.5,d.58.26.5 93083,93084 2aj6A 159 2.60e+01 1tr0A 108 2.62e+01 d.58.4.4 107261 1whbA 157 2.63e+01 1rfeA 162 2.65e+01 2a4dA 160 2.66e+01 1quqB 121 2.71e+01 1quqB b.40.4.3 25305 1zc1A 208 2.72e+01 1eziA 228 2.72e+01 1eyrA c.68.1.13 34512 1wrjA 156 2.78e+01 1r1qA 100 2.80e+01 d.93.1.1 104763 1pbjA 125 2.88e+01 d.37.1.1,d.37.1.1 94414,94415 1hfoA 113 2.96e+01 d.80.1.3 61006 1wojA 214 3.02e+01 2a6aA 218 3.06e+01 2fueA 262 3.07e+01 1h54A 754 3.10e+01 a.102.1.4,b.30.5.3 60634,60635 1mo9A 523 3.13e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1d1gA 168 3.15e+01 1d1gA c.71.1.1 34889 1xsqA 168 3.21e+01 1sqsA 242 3.22e+01 c.23.5.5 98968 1no5A 114 3.29e+01 d.218.1.5 92014 2c6yA 111 3.32e+01 1c52 131 3.34e+01 1c52 a.3.1.1 15810 1ny4A 82 3.36e+01 b.40.4.5 92316 1f06A 320 3.41e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1gouA 116 3.44e+01 d.1.1.2 65429 1cf7B 95 3.44e+01 1cf7B a.4.5.17 16152 1u46A 291 3.49e+01 d.144.1.7 107656 1bia 321 3.60e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1zvpA 133 3.62e+01 1m93A 55 3.62e+01 e.1.1.1 91235 2g3aA 152 3.62e+01 2aw42 46 3.70e+01 1nwwA 149 3.71e+01 d.17.4.8 86306 1yfbA 59 3.71e+01 1nwaA 203 3.74e+01 d.58.28.1 86295 1vbvA 105 3.86e+01 1nt2A 210 3.87e+01 c.66.1.3 86149 1wspA 84 3.93e+01 1sn4A 64 4.02e+01 1aho g.3.7.1 44136 2gi9A 56 4.10e+01 1cc8A 73 4.12e+01 1cc8A d.58.17.1 39343 1qu9A 128 4.13e+01 1qu9A d.79.1.1 39755 1kgdA 180 4.14e+01 c.37.1.1 68582 1gy6A 127 4.18e+01 d.17.4.2 70736 2f06A 144 4.24e+01 2g6tA 306 4.25e+01 1kl9A 182 4.26e+01 b.40.4.5 72681 1omrA 201 4.26e+01 a.39.1.5 93349 1tig 94 4.26e+01 1tig d.68.1.1 39566 1qb2A 109 4.29e+01 1qb2A a.36.1.1 17125 1kv0A 66 4.29e+01 g.3.7.1 91040 1lqtA 456 4.36e+01 c.3.1.1,c.4.1.1 74198,74199 1xwvA 129 4.37e+01 1vrtA 560 4.45e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 2f9dA 125 4.47e+01 1fvgA 199 4.52e+01 1fvaA d.58.28.1 39408 2gfgA 193 4.60e+01 1pp0A 199 4.61e+01 d.103.1.1 104211 1y14B 171 4.69e+01 1ifqA 138 4.69e+01 1ifqA d.110.4.1 62350 1qysA 106 4.69e+01 k.41.1.1 96603 1e25A 282 4.75e+01 1e25A e.3.1.1 42731 1zud1 251 4.87e+01 1ztcA 221 5.05e+01 1j8bA 112 5.07e+01 d.222.1.1 77101 1wr8A 231 5.16e+01 1gyxA 76 5.24e+01 d.80.1.1 76387 2a5hA 416 5.26e+01 1n7eA 97 5.26e+01 b.36.1.1 91691 1k0hA 117 5.31e+01 b.106.1.2 71975 1njhA 119 5.39e+01 b.128.1.1 85787 1upiA 225 5.42e+01 b.82.1.1 99757 1z02A 446 5.43e+01 1pvdA 537 5.50e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2cxcA 144 5.55e+01 2gh1A 301 5.68e+01 1qdeA 224 5.69e+01 1qvaA c.37.1.19 32410 2gaiA 633 5.70e+01 1kw4A 89 5.70e+01 a.60.1.2 73077 1hcnA 92 5.74e+01 1hcnA g.17.1.4 44809 1w2lA 99 5.74e+01 1juvA 193 5.76e+01 c.71.1.1 90912 1wnyA 186 5.85e+01 1pz1A 333 5.85e+01 c.1.7.1 95390 1q8bA 105 5.86e+01 d.58.4.6 96201 2bpa1 426 5.93e+01 2bpa1 1q68A 38 5.94e+01 j.48.1.1 95962 1bn8A 420 5.94e+01 1pcl b.80.1.1 28022 1jh3A 107 5.94e+01 d.66.1.4 71661 1jogA 146 6.02e+01 a.24.16.2 77142 2a50B 168 6.05e+01 1rmwA 212 6.07e+01 1ne5A 42 6.07e+01 g.3.7.2 85588 1eg2A 319 6.09e+01 1eg2A c.66.1.11 34249 1wi6A 88 6.09e+01 2b82A 211 6.16e+01 1wkaA 147 6.18e+01 1vggA 161 6.18e+01 2hrvA 142 6.25e+01 2hrvA b.47.1.4 26429 2bh4X 134 6.26e+01 1gppA 237 6.29e+01 b.86.1.2 76262 1djtA 64 6.31e+01 1aho g.3.7.1 44132 1f2tB 148 6.33e+01 1f2tB 1rp4A 389 6.33e+01 a.227.1.1 105027 1y8oB 128 6.43e+01 1m07A 111 6.51e+01 d.5.1.1 78328 1xn7A 78 6.51e+01 1e4mM 501 6.55e+01 1e70M c.1.8.4 59226 1s14A 194 6.58e+01 d.122.1.2 98329 1neiA 60 6.65e+01 d.253.1.1 91843 1id0A 152 6.69e+01 d.122.1.3 66111 1oa8A 133 6.69e+01 b.145.1.1 92698 1qfjA 232 6.88e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1qjcA 158 6.88e+01 1b6tA c.26.1.3 63328 2eulA 156 6.92e+01 1dptA 117 7.01e+01 1dptA d.80.1.3 39862 1whi 122 7.04e+01 1whi b.39.1.1 24810 1a2pA 110 7.09e+01 1b20A d.1.1.2 36140 1bby 69 7.11e+01 2bby a.4.5.15 16149 1c5eA 95 7.27e+01 1c5eA b.85.2.1 28317 2cu3A 64 7.28e+01 1dwkA 156 7.42e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1dqiA 124 7.43e+01 1do6A b.1.13.1 22357 1gpmA 525 7.44e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1uylA 236 7.44e+01 d.122.1.1 108147 2aexA 346 7.47e+01 1w96A 554 7.49e+01 2culA 232 7.56e+01 1wmiB 67 7.61e+01 1nbuA 119 7.61e+01 d.96.1.3 91767 1w5fA 353 7.65e+01 1zud2 66 7.66e+01 1vkiA 181 7.68e+01 d.116.1.1 108664 1tif 78 7.69e+01 1tif d.15.8.1 37836 1r9dA 787 7.80e+01 c.7.1.1 104865 1yv4A 104 7.84e+01 1vyiA 112 7.94e+01 1cqmA 101 7.96e+01 1ris d.58.14.1 39321 2ab5A 269 7.96e+01 2fneA 117 7.96e+01 2dpmA 284 8.02e+01 2dpmA c.66.1.28 34246 1ypvA 313 8.02e+01 1owfA 99 8.06e+01 a.55.1.1 87487 1kveB 77 8.07e+01 1kveB 2cvlA 124 8.16e+01 1fit 147 8.16e+01 1fit d.13.1.1 37499 1eejA 216 8.23e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1ohpA 125 8.24e+01 1xdfA 157 8.26e+01 1omyA 65 8.26e+01 g.3.7.1 93354 1vgjA 184 8.29e+01 1oe8A 211 8.30e+01 a.45.1.1,c.47.1.5 86905,86906 1y5oA 115 8.32e+01 1te7A 103 8.35e+01 1kwaA 88 8.35e+01 1kwaA b.36.1.1 24772 1mwwA 128 8.36e+01 d.80.1.4 91483 1uheA 97 8.40e+01 2b7eA 59 8.45e+01 1d2nA 272 8.45e+01 1d2nA c.37.1.20 32428 2bw2A 140 8.47e+01 1qhdA 398 8.49e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1si2A 149 8.50e+01 b.34.14.1 105569 1snzA 344 8.56e+01 b.30.5.4 98930 1wduA 245 8.57e+01 d.151.1.1 109286 1l3iA 192 8.62e+01 c.66.1.22 77676 2cyeA 133 8.64e+01 1ten 90 8.68e+01 1ten b.1.2.1 21990 2a1fA 247 8.76e+01 1wwiA 148 8.95e+01 1m6pA 152 9.00e+01 1m6pA b.64.1.1 27519