Best Alignments for T0309

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y96B/T0309-1y96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0309-1y96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1403e+001.83e-05
2snv/T0309-2snv-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2snv/T0309-2snv-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6500e+003.16e+02 1svpA b.47.1.3
1d2pA/T0309-1d2pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d2pA/T0309-1d2pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6800e+007.77e+00 1d2oA b.3.5.1
b.3.5.1
b.3.5.1
b.3.5.1
1ld4A/T0309-1ld4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ld4A/T0309-1ld4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8900e+002.66e+02 i.6.1.1
1hyuA/T0309-1hyuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hyuA/T0309-1hyuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9736e+001.39e+00 1hyuA c.3.1.5
c.3.1.5
c.47.1.2
c.47.1.2
1ghtA/T0309-1ghtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ghtA/T0309-1ghtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3000e+004.49e+03 2rslA c.53.1.1
1repC/T0309-1repC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1repC/T0309-1repC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6946e+005.53e-03 1repC a.4.5.10
a.4.5.10
1dyqA/T0309-1dyqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dyqA/T0309-1dyqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4715e+001.24e+00 3seb b.40.2.2
d.15.6.1
1m93A/T0309-1m93A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m93A/T0309-1m93A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1186e+001.77e-01 e.1.1.1
1gdtA/T0309-1gdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gdtA/T0309-1gdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9400e+001.36e+02 2rslA a.4.1.2
c.53.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001