# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2oA 187 1.07e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1hyuA 521 1.26e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1zynA 202 1.67e+00 1repC 251 1.81e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 4.72e+00 1y96B 85 5.86e+00 1wspA 84 5.90e+00 1svpA 161 6.50e+00 1svpA b.47.1.3 26384 2ewrA 170 6.55e+00 1vlqA 337 6.63e+00 c.69.1.25 108848 2adoA 196 7.90e+00 2fclA 169 8.24e+00 1aisA 182 8.41e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 2rslA 140 9.21e+00 2rslA c.53.1.1 33345 1hrkA 359 9.81e+00 1hrkA c.92.1.1 61228 1dyqA 234 1.04e+01 3seb b.40.2.2,d.15.6.1 59140,59141 2etxA 209 1.12e+01 1m93A 55 1.29e+01 e.1.1.1 91235 1pnsC 206 1.29e+01 i.1.1.1 88170 1snlA 103 1.51e+01 a.39.1.7 105820 1fjgC 239 1.54e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1ih8A 271 1.55e+01 2nsyA c.26.2.1 62377 1cf7B 95 1.69e+01 1cf7B a.4.5.17 16152 1ma3A 253 1.72e+01 c.31.1.5 78883 1rr7A 129 1.79e+01 a.4.1.14 105075 2bwbA 46 1.93e+01 1iz5A 249 1.98e+01 d.131.1.2,d.131.1.2 83834,83835 1xhfA 123 2.13e+01 1ktjA 129 2.17e+01 b.1.18.7 72974 1vkuA 100 2.17e+01 a.28.1.1 108690 1ydmA 187 2.18e+01 2b7eA 59 2.20e+01 1kqpA 271 2.20e+01 c.26.2.1 72883 1agjA 242 2.24e+01 1agjA b.47.1.1 25827 1o7dE 126 2.27e+01 1utiA 58 2.47e+01 b.34.2.1 99962 1mdc 133 2.66e+01 1hmt b.60.1.2 27198 1z6oA 212 2.74e+01 1x4tA 92 2.80e+01 1kq3A 376 2.80e+01 e.22.1.2 68790 2fdrA 229 2.83e+01 2gw6A 123 2.89e+01 2d3jA 157 2.99e+01 1urnA 97 2.99e+01 1urnA d.58.7.1 39153 1u6bA 98 3.23e+01 d.58.7.1 107703 1vqoL 165 3.41e+01 1nu4A 97 3.41e+01 d.58.7.1 80731 2flsA 132 3.44e+01 1kyqA 274 3.45e+01 c.2.1.11,e.37.1.1 73281,73282 1zx5A 300 3.45e+01 1a0rP 245 3.47e+01 1b9yC c.47.1.6 33054 1wr1B 58 3.49e+01 1knzA 164 3.50e+01 e.34.1.1 68709 1jj2K 164 3.71e+01 1ffkJ c.12.1.1 63096 1s72L 165 3.77e+01 c.12.1.1 105331 1bby 69 3.78e+01 2bby a.4.5.15 16149 1qopB 396 3.95e+01 2tysB c.79.1.1 35270 2b33A 140 4.05e+01 1dkuA 317 4.07e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1sqsA 242 4.13e+01 c.23.5.5 98968 1wwhA 119 4.17e+01 1lwjA 441 4.33e+01 b.71.1.1,c.1.8.1 74303,74304 1v5nA 89 4.79e+01 g.49.1.3 108380 5pal 109 4.88e+01 1a75A a.39.1.4 17215 1zpsA 138 5.09e+01 2as9A 210 5.28e+01 1qhlA 227 5.32e+01 1qhlA c.37.1.12 32382 1ukkA 142 5.41e+01 d.227.1.1 99491 1gyxA 76 5.50e+01 d.80.1.1 76387 1in0A 163 5.55e+01 d.58.49.1,d.58.49.1 83694,83695 1ucrA 78 5.55e+01 a.4.5.45 99188 1f6dA 376 5.60e+01 1f6dA c.87.1.3 35467 1exrA 148 5.61e+01 1cll a.39.1.5 17299 1dj7B 75 5.89e+01 1dj7B b.34.4.3 24598 1vr8A 142 5.95e+01 1oiaA 95 6.00e+01 d.58.7.1 87051 1nhcA 336 6.14e+01 b.80.1.3 91879 1e0wA 313 6.21e+01 1taxA c.1.8.3 59150 1shsA 147 6.21e+01 1shsA b.15.1.1 23675 1gkzA 388 6.44e+01 a.29.5.1,d.122.1.4 65268,65269 1w2yA 229 6.49e+01 a.204.1.1 109140 1s55A 156 6.54e+01 1quqB 121 6.75e+01 1quqB b.40.4.3 25305 1oebA 62 6.83e+01 b.34.2.1 86909 1ft5A 211 6.92e+01 1bvb a.138.1.3 19681 1sek 378 6.96e+01 1sek e.1.1.1 42675 1zthA 258 7.06e+01 1bn8A 420 7.08e+01 1pcl b.80.1.1 28022 1yf9A 171 7.14e+01 1iqaA 160 7.23e+01 b.22.1.1 71274 2a6vA 226 7.50e+01 1gggA 226 7.63e+01 1lst c.94.1.1 35817 2a33A 215 7.72e+01 1rqtA 37 8.12e+01 a.108.1.1 97771 1qorA 327 8.32e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 2bg5A 324 8.52e+01 1vdyA 140 8.81e+01 1c52 131 8.82e+01 1c52 a.3.1.1 15810 1gsoA 431 8.85e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1fwkA 296 8.87e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 1ulkA 126 8.91e+01 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561 1e9rA 437 8.99e+01 c.37.1.11 64827