# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zynA 202 3.43e-01 1dyqA 234 3.49e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1hyuA 521 5.22e-01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2rslA 140 1.02e+00 2rslA c.53.1.1 33345 1iz5A 249 3.02e+00 d.131.1.2,d.131.1.2 83834,83835 1m93A 55 3.11e+00 e.1.1.1 91235 1sqsA 242 3.92e+00 c.23.5.5 98968 2afbA 351 5.31e+00 1qhlA 227 5.32e+00 1qhlA c.37.1.12 32382 1j5vA 351 5.45e+00 c.72.1.1 71585 1xn5A 146 5.76e+00 2fclA 169 6.36e+00 2ewrA 170 6.37e+00 1od8A 313 7.94e+00 c.1.8.3 86838 1ma3A 253 8.31e+00 c.31.1.5 78883 1repC 251 9.09e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2gw6A 123 9.14e+00 1c7nA 399 9.86e+00 1d2fA c.67.1.3 34413 1v0lA 313 9.90e+00 c.1.8.3 108207 1e0wA 313 9.91e+00 1taxA c.1.8.3 59150 1lwjA 441 1.00e+01 b.71.1.1,c.1.8.1 74303,74304 1k38A 254 1.22e+01 e.3.1.1 84303 1a0rP 245 1.23e+01 1b9yC c.47.1.6 33054 1d2oA 187 1.24e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 2pil 159 1.46e+01 2pil d.24.1.1 38376 1e9rA 437 1.47e+01 c.37.1.11 64827 1pnsC 206 1.47e+01 i.1.1.1 88170 1h72C 296 1.51e+01 d.14.1.5,d.58.26.1 60712,60713 1fwkA 296 1.57e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 1yiyA 429 1.58e+01 2b33A 140 1.62e+01 1qlmA 316 1.62e+01 1qlmA d.147.1.1 41765 1mixA 206 1.69e+01 a.11.2.1,b.55.1.5 79166,79167 1ydmA 187 1.72e+01 1wspA 84 1.74e+01 1xhfA 123 1.80e+01 1bby 69 1.88e+01 2bby a.4.5.15 16149 1evuA 731 1.90e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1tlk 154 1.93e+01 1tlk b.1.1.4 21707 1ur1A 378 1.94e+01 c.1.8.3 99804 1vkuA 100 1.97e+01 a.28.1.1 108690 2cxcA 144 1.99e+01 1fhgA 154 1.99e+01 1tlk b.1.1.4 21706 1ri5A 298 2.10e+01 c.66.1.34 97502 1tiqA 180 2.12e+01 d.108.1.1 107010 1c52 131 2.37e+01 1c52 a.3.1.1 15810 1sr4B 261 2.39e+01 d.151.1.1 105949 1n8kA 374 2.43e+01 b.35.1.2,c.2.1.1 80298,80299 1rwzA 245 2.46e+01 d.131.1.2,d.131.1.2 98005,98006 1hetA 374 2.47e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1yizA 429 2.52e+01 1ex0A 731 2.52e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2ohxA 374 2.53e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1h09A 338 2.55e+01 b.109.1.1,c.1.8.8 83420,83421 1vqoI 162 2.56e+01 2gfgA 193 2.67e+01 2g6tA 306 2.74e+01 2b7eA 59 2.78e+01 1tluA 130 2.84e+01 d.156.1.2 107139 1b25A 619 2.93e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1shsA 147 3.09e+01 1shsA b.15.1.1 23675 1p8kZ 254 3.23e+01 d.95.2.1,d.95.2.1 94361,94362 1vr7A 142 3.32e+01 1u2xA 474 3.32e+01 c.72.1.3 107622 1pbgA 468 3.34e+01 1e70M c.1.8.4 28946 2bg5A 324 3.43e+01 1ryjA 70 3.45e+01 d.15.3.2 98104 1tf1A 198 3.62e+01 d.110.2.2 106826 1o57A 291 3.63e+01 a.4.5.40,c.61.1.1 92483,92484 4uagA 437 3.67e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1eceA 358 3.69e+01 1eceA c.1.8.3 28813 1cby 259 3.69e+01 1cby d.103.1.1 40705 1e0tA 470 3.82e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1xewY 172 3.89e+01 2amhA 207 3.91e+01 1bia 321 4.14e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1ycyA 71 4.19e+01 1b5tA 275 4.21e+01 1b5tA c.1.23.1 29676 1zp4A 304 4.26e+01 1ih8A 271 4.26e+01 2nsyA c.26.2.1 62377 1u3wA 374 4.27e+01 2g9iA 249 4.30e+01 1kqpA 271 4.31e+01 c.26.2.1 72883 1ygs 234 4.55e+01 1ygs b.26.1.1 23907 1urnA 97 4.69e+01 1urnA d.58.7.1 39153 1qi9A 556 4.70e+01 1qhbA a.111.1.2 19053 1y96B 85 4.70e+01 2fh7A 595 4.77e+01 1qg8A 255 4.89e+01 1qg8A c.68.1.1 34505 1a99A 344 4.91e+01 1pot c.94.1.1 35812 1igs 248 4.95e+01 1a53 c.1.2.4 28565 1vddA 228 5.03e+01 e.49.1.1 108519 1nq6A 302 5.10e+01 c.1.8.3 92046 3seb 238 5.10e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1larA 575 5.14e+01 1larA c.45.1.2,c.45.1.2 32693,32694 5nul 138 5.15e+01 5nul c.23.5.1 31191 2etxA 209 5.36e+01 2adoA 196 5.38e+01 1xfcA 384 5.42e+01 1h8vA 218 5.44e+01 2nlrA b.29.1.11 60795 1hqz1 141 5.55e+01 1pp0A 199 5.55e+01 d.103.1.1 104211 1oa2A 218 5.56e+01 b.29.1.11 86721 1fc1A 224 5.58e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1o58A 303 5.60e+01 c.79.1.1 92491 1o1zA 234 5.63e+01 c.1.18.3 86555 1sek 378 5.64e+01 1sek e.1.1.1 42675 1vbvA 105 5.65e+01 1veaA 148 5.69e+01 d.275.1.1 108529 1xwvA 129 5.72e+01 1a53 247 5.96e+01 1a53 c.1.2.4 28564 1wmhB 86 6.00e+01 1pbjA 125 6.01e+01 d.37.1.1,d.37.1.1 94414,94415 1exg 110 6.07e+01 1exg b.2.2.1 22387 1nf3C 128 6.14e+01 b.36.1.1 85596 2c3zA 222 6.24e+01 2myr 501 6.27e+01 1reqB 637 6.34e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1bn8A 420 6.38e+01 1pcl b.80.1.1 28022 1c7qA 445 6.45e+01 2pgi c.80.1.2 35307 1wdnA 226 6.88e+01 1lst c.94.1.1 35816 1no5A 114 6.92e+01 d.218.1.5 92014 2culA 232 6.95e+01 1szoA 257 7.12e+01 c.14.1.3 106164 1o8uA 257 7.14e+01 c.14.1.3 81194 1woqA 267 7.15e+01 c.55.1.10,c.55.1.10 109462,109463 1ca1 370 7.17e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2tpt 440 7.25e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1ltlA 279 7.30e+01 b.40.4.11 84701 2g50A 530 7.47e+01 1wcdJ 441 7.50e+01 1ede 310 7.59e+01 1b6g c.69.1.8 34662 2ab5A 269 7.60e+01 1h7zA 194 7.61e+01 1qhvA b.21.1.1 60733 1nijA 318 7.79e+01 c.37.1.10,d.237.1.1 85741,85742 1zpvA 91 7.85e+01 1qavA 90 7.95e+01 1qauA b.36.1.1 24777 2adbA 148 8.03e+01 1g0sA 209 8.04e+01 1g0sA d.113.1.1 60187 1tw0A 157 8.11e+01 7a3hA 303 8.11e+01 7a3hA c.1.8.3 28817 1l6xA 207 8.25e+01 b.1.1.2,b.1.1.2 73642,73643 1wqaA 455 8.25e+01 1o6dA 163 8.28e+01 c.116.1.3 92567 1regX 122 8.29e+01 1regX d.58.27.1 39406 1o98A 511 8.34e+01 c.105.1.1,c.76.1.3 86684,86685 1vckA 115 8.45e+01 2czrA 226 8.50e+01 1b6g 310 8.52e+01 1b6g c.69.1.8 34661 1eqjA 511 8.54e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 1fh9A 312 8.58e+01 1taxA c.1.8.3 28913 1fjgC 239 8.59e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1s55A 156 8.59e+01 1iqaA 160 8.62e+01 b.22.1.1 71274 1of8A 370 8.64e+01 c.1.10.4 92819 1ooyA 481 8.93e+01 c.124.1.3,c.124.1.2 93388,93389 2aq4A 434 8.98e+01