# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1svpA 161 1.32e+00 1svpA b.47.1.3 26384 1wspA 84 1.39e+00 1d2oA 187 1.77e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1cf7B 95 2.24e+00 1cf7B a.4.5.17 16152 2etxA 209 2.62e+00 1hyuA 521 3.14e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1hrkA 359 3.22e+00 1hrkA c.92.1.1 61228 2adoA 196 3.38e+00 1ma3A 253 5.79e+00 c.31.1.5 78883 1z6oA 212 6.01e+00 1repC 251 7.12e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 8.26e+00 1y96B 85 8.44e+00 1ktjA 129 8.69e+00 b.1.18.7 72974 1gkzA 388 1.04e+01 a.29.5.1,d.122.1.4 65268,65269 1pnsC 206 1.10e+01 i.1.1.1 88170 1fjgC 239 1.15e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1pu1A 94 1.16e+01 d.266.1.1 104307 1uheA 97 1.41e+01 1w2yA 229 1.66e+01 a.204.1.1 109140 1o7dE 126 1.69e+01 1ppjE 196 1.77e+01 b.33.1.1,f.23.12.1 104260,104261 1z57A 339 1.97e+01 1x4tA 92 2.07e+01 1vkuA 100 2.19e+01 a.28.1.1 108690 1gyxA 76 2.25e+01 d.80.1.1 76387 1zynA 202 2.25e+01 1oiaA 95 2.64e+01 d.58.7.1 87051 1yukA 103 2.74e+01 1vlqA 337 2.76e+01 c.69.1.25 108848 1zvdA 380 2.87e+01 2b7eA 59 2.89e+01 1q9uA 130 2.90e+01 d.129.7.1 96314 1u6bA 98 2.93e+01 d.58.7.1 107703 2c7hA 86 2.98e+01 1f3uA 118 3.05e+01 1f3uA b.65.1.1 27521 1bby 69 3.16e+01 2bby a.4.5.15 16149 1v5nA 89 3.33e+01 g.49.1.3 108380 1qopB 396 3.53e+01 2tysB c.79.1.1 35270 1wy6A 172 3.60e+01 2b33A 140 3.65e+01 1nu4A 97 3.65e+01 d.58.7.1 80731 1urnA 97 3.80e+01 1urnA d.58.7.1 39153 1knzA 164 4.03e+01 e.34.1.1 68709 2ez6A 221 4.29e+01 2flsA 132 4.31e+01 2rslA 140 4.37e+01 2rslA c.53.1.1 33345 1t7sA 137 4.55e+01 a.7.7.1 106636 1k0hA 117 4.57e+01 b.106.1.2 71975 1p5vA 235 4.80e+01 b.1.11.1,b.7.2.1 87812,87813 1snlA 103 4.85e+01 a.39.1.7 105820 2astA 159 4.93e+01 1vor4 46 5.00e+01 1vp2A 208 5.08e+01 1s6lA 212 5.08e+01 1jk0A 419 5.13e+01 a.25.1.2 63142 1vfrA 218 5.15e+01 1vfrA d.90.1.1 40247 1f06A 320 5.29e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1dj7B 75 5.44e+01 1dj7B b.34.4.3 24598 1utiA 58 5.47e+01 b.34.2.1 99962 2gw6A 123 5.51e+01 1jk4A 89 5.56e+01 b.9.1.1 77130 2d3jA 157 5.67e+01 2bh4X 134 5.75e+01 1yl37 47 5.78e+01 1vdyA 140 5.80e+01 1ukkA 142 5.84e+01 d.227.1.1 99491 2bpa1 426 6.14e+01 2bpa1 1zdzA 302 6.33e+01 1n13B 113 6.36e+01 1in0A 163 6.40e+01 d.58.49.1,d.58.49.1 83694,83695 1ucrA 78 6.45e+01 a.4.5.45 99188 2bwbA 46 6.47e+01 2a6vA 226 6.67e+01 1rr7A 129 6.73e+01 a.4.1.14 105075 2g3aA 152 6.84e+01 1fhgA 154 6.88e+01 1tlk b.1.1.4 21706 1tlk 154 6.93e+01 1tlk b.1.1.4 21707 1xn5A 146 6.99e+01 2fdrA 229 7.22e+01 2ewrA 170 7.40e+01 1mszA 86 7.40e+01 d.68.7.1 79428 2b7yA 182 7.57e+01 2bleA 367 7.60e+01 1yg6A 193 7.60e+01 1eg2A 319 8.26e+01 1eg2A c.66.1.11 34249 1vq3A 94 8.44e+01 1y32A 24 8.61e+01 1vpzA 73 8.67e+01 1cdq 77 8.71e+01 1cds g.7.1.3 44459 1z94A 147 8.77e+01 1keaA 221 8.82e+01 a.96.1.2 68491 1kyqA 274 8.87e+01 c.2.1.11,e.37.1.1 73281,73282 1wwhA 119 8.97e+01