/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0308.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0308.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0308/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h57A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175367195 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.01809 sec, elapsed time= 6.11336 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.09707 sec, elapsed time= 6.20875 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0308 numbered 1 through 165 Created new target T0308 from T0308.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2h57A expands to /projects/compbio/data/pdb/2h57.pdb.gz 2h57A:Skipped atom 123, because occupancy 5.0000000e-01 <= existing 0.500 in 2h57A Skipped atom 127, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 129, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 394, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 398, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 400, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 766, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1048, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1050, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1052, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1056, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1163, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1167, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1169, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 2h57A Skipped atom 1173, because occupancy 0.500 <= existing 0.500 in 2h57A Read 165 residues and 1274 atoms. # choosing archetypes in rotamer library # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 10.8893 sec, elapsed time= 11.082 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -88.4848 # GDT_score(maxd=8,maxw=2.9)= -91.6326 # GDT_score(maxd=8,maxw=3.2)= -89.3887 # GDT_score(maxd=8,maxw=3.5)= -86.8546 # GDT_score(maxd=10,maxw=3.8)= -88.1415 # GDT_score(maxd=10,maxw=4)= -86.3805 # GDT_score(maxd=10,maxw=4.2)= -84.457 # GDT_score(maxd=12,maxw=4.3)= -86.886 # GDT_score(maxd=12,maxw=4.5)= -85.0197 # GDT_score(maxd=12,maxw=4.7)= -83.0087 # GDT_score(maxd=14,maxw=5.2)= -80.8273 # GDT_score(maxd=14,maxw=5.5)= -77.5776 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1934.000 rmsd (weighted)= 2.449 (unweighted)= 11.160 superimposing iter= 1 total_weight= 6868.782 rmsd (weighted)= 0.891 (unweighted)= 11.170 superimposing iter= 2 total_weight= 2664.841 rmsd (weighted)= 0.604 (unweighted)= 11.171 superimposing iter= 3 total_weight= 1505.390 rmsd (weighted)= 0.552 (unweighted)= 11.171 superimposing iter= 4 total_weight= 1347.315 rmsd (weighted)= 0.535 (unweighted)= 11.172 superimposing iter= 5 total_weight= 1316.615 rmsd (weighted)= 0.525 (unweighted)= 11.172 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_210175493.pdb -s /var/tmp/to_scwrl_210175493.seq -o /var/tmp/from_scwrl_210175493.pdb > /var/tmp/scwrl_210175493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210175493.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -88.3333 # GDT_score(maxd=8,maxw=2.9)= -91.2964 # GDT_score(maxd=8,maxw=3.2)= -89.0309 # GDT_score(maxd=8,maxw=3.5)= -86.519 # GDT_score(maxd=10,maxw=3.8)= -87.8386 # GDT_score(maxd=10,maxw=4)= -86.1069 # GDT_score(maxd=10,maxw=4.2)= -84.3077 # GDT_score(maxd=12,maxw=4.3)= -86.6501 # GDT_score(maxd=12,maxw=4.5)= -84.8967 # GDT_score(maxd=12,maxw=4.7)= -83.0341 # GDT_score(maxd=14,maxw=5.2)= -81.0663 # GDT_score(maxd=14,maxw=5.5)= -77.981 # command:# request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_913072071.pdb -s /var/tmp/to_scwrl_913072071.seq -o /var/tmp/from_scwrl_913072071.pdb > /var/tmp/scwrl_913072071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_913072071.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -90 # GDT_score(maxd=8,maxw=2.9)= -94.1454 # GDT_score(maxd=8,maxw=3.2)= -91.7554 # GDT_score(maxd=8,maxw=3.5)= -88.8339 # GDT_score(maxd=10,maxw=3.8)= -89.9853 # GDT_score(maxd=10,maxw=4)= -88.0056 # GDT_score(maxd=10,maxw=4.2)= -85.8546 # GDT_score(maxd=12,maxw=4.3)= -88.3812 # GDT_score(maxd=12,maxw=4.5)= -86.2886 # GDT_score(maxd=12,maxw=4.7)= -84.074 # GDT_score(maxd=14,maxw=5.2)= -81.7704 # GDT_score(maxd=14,maxw=5.5)= -78.512 # command:# request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_840748633.pdb -s /var/tmp/to_scwrl_840748633.seq -o /var/tmp/from_scwrl_840748633.pdb > /var/tmp/scwrl_840748633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_840748633.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -88.4848 # GDT_score(maxd=8,maxw=2.9)= -91.2557 # GDT_score(maxd=8,maxw=3.2)= -89.0478 # GDT_score(maxd=8,maxw=3.5)= -86.5302 # GDT_score(maxd=10,maxw=3.8)= -87.8477 # GDT_score(maxd=10,maxw=4)= -86.1704 # GDT_score(maxd=10,maxw=4.2)= -84.4335 # GDT_score(maxd=12,maxw=4.3)= -86.7199 # GDT_score(maxd=12,maxw=4.5)= -85.0313 # GDT_score(maxd=12,maxw=4.7)= -83.2159 # GDT_score(maxd=14,maxw=5.2)= -81.3225 # GDT_score(maxd=14,maxw=5.5)= -78.3434 # command:# request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1023846726.pdb -s /var/tmp/to_scwrl_1023846726.seq -o /var/tmp/from_scwrl_1023846726.pdb > /var/tmp/scwrl_1023846726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1023846726.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.848485 # GDT_score = -60.7576 # GDT_score(maxd=8,maxw=2.9)= -62.6016 # GDT_score(maxd=8,maxw=3.2)= -60.3283 # GDT_score(maxd=8,maxw=3.5)= -57.7809 # GDT_score(maxd=10,maxw=3.8)= -60.2468 # GDT_score(maxd=10,maxw=4)= -58.4861 # GDT_score(maxd=10,maxw=4.2)= -56.7001 # GDT_score(maxd=12,maxw=4.3)= -59.789 # GDT_score(maxd=12,maxw=4.5)= -58.0314 # GDT_score(maxd=12,maxw=4.7)= -56.3105 # GDT_score(maxd=14,maxw=5.2)= -55.3246 # GDT_score(maxd=14,maxw=5.5)= -52.9563 # command:# request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_557991779.pdb -s /var/tmp/to_scwrl_557991779.seq -o /var/tmp/from_scwrl_557991779.pdb > /var/tmp/scwrl_557991779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557991779.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0308.try1-opt2.pdb looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -88.4848 # GDT_score(maxd=8,maxw=2.9)= -91.2445 # GDT_score(maxd=8,maxw=3.2)= -89.0372 # GDT_score(maxd=8,maxw=3.5)= -86.5221 # GDT_score(maxd=10,maxw=3.8)= -87.8397 # GDT_score(maxd=10,maxw=4)= -86.1616 # GDT_score(maxd=10,maxw=4.2)= -84.4255 # GDT_score(maxd=12,maxw=4.3)= -86.7118 # GDT_score(maxd=12,maxw=4.5)= -85.0238 # GDT_score(maxd=12,maxw=4.7)= -83.2085 # GDT_score(maxd=14,maxw=5.2)= -81.3225 # GDT_score(maxd=14,maxw=5.5)= -78.3417 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1934.000 rmsd (weighted)= 2.479 (unweighted)= 11.233 superimposing iter= 1 total_weight= 7024.241 rmsd (weighted)= 0.889 (unweighted)= 11.241 superimposing iter= 2 total_weight= 2808.061 rmsd (weighted)= 0.581 (unweighted)= 11.245 superimposing iter= 3 total_weight= 1677.877 rmsd (weighted)= 0.499 (unweighted)= 11.247 superimposing iter= 4 total_weight= 1468.516 rmsd (weighted)= 0.460 (unweighted)= 11.248 superimposing iter= 5 total_weight= 1365.536 rmsd (weighted)= 0.441 (unweighted)= 11.248 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0308.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0308)K22.C and (T0308)P23.C only 0.000 apart, marking (T0308)P23.C as missing WARNING: atoms too close: (T0308)P23.N and (T0308)S24.N only 0.000 apart, marking (T0308)P23.N as missing WARNING: atoms too close: (T0308)P23.CA and (T0308)S24.CA only 0.000 apart, marking (T0308)P23.CA as missing WARNING: atoms too close: (T0308)V122.C and (T0308)V125.C only 0.000 apart, marking (T0308)V125.C as missing WARNING: atoms too close: (T0308)T123.N and (T0308)K126.N only 0.000 apart, marking (T0308)T123.N as missing WARNING: atoms too close: (T0308)T123.CA and (T0308)K126.CA only 0.000 apart, marking (T0308)T123.CA as missing # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.89697 # GDT_score = -64.5455 # GDT_score(maxd=8,maxw=2.9)= -66.3866 # GDT_score(maxd=8,maxw=3.2)= -63.956 # GDT_score(maxd=8,maxw=3.5)= -61.2573 # GDT_score(maxd=10,maxw=3.8)= -63.8461 # GDT_score(maxd=10,maxw=4)= -61.9661 # GDT_score(maxd=10,maxw=4.2)= -60.0639 # GDT_score(maxd=12,maxw=4.3)= -63.3329 # GDT_score(maxd=12,maxw=4.5)= -61.462 # GDT_score(maxd=12,maxw=4.7)= -59.6431 # GDT_score(maxd=14,maxw=5.2)= -58.6015 # GDT_score(maxd=14,maxw=5.5)= -56.1125 # command:# ReadConformPDB reading from PDB file T0308.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0308)K22.C and (T0308)P23.C only 0.000 apart, marking (T0308)P23.C as missing WARNING: atoms too close: (T0308)P23.N and (T0308)S24.N only 0.000 apart, marking (T0308)P23.N as missing WARNING: atoms too close: (T0308)P23.CA and (T0308)S24.CA only 0.000 apart, marking (T0308)P23.CA as missing WARNING: atoms too close: (T0308)H99.C and (T0308)I102.C only 0.000 apart, marking (T0308)I102.C as missing WARNING: atoms too close: (T0308)P100.N and (T0308)K103.N only 0.000 apart, marking (T0308)P100.N as missing WARNING: atoms too close: (T0308)P100.CA and (T0308)K103.CA only 0.000 apart, marking (T0308)P100.CA as missing WARNING: atoms too close: (T0308)V122.C and (T0308)V125.C only 0.000 apart, marking (T0308)V125.C as missing WARNING: atoms too close: (T0308)T123.N and (T0308)K126.N only 0.000 apart, marking (T0308)T123.N as missing WARNING: atoms too close: (T0308)T123.CA and (T0308)K126.CA only 0.000 apart, marking (T0308)T123.CA as missing # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.939394 # GDT_score = -59.0909 # GDT_score(maxd=8,maxw=2.9)= -60.3718 # GDT_score(maxd=8,maxw=3.2)= -57.354 # GDT_score(maxd=8,maxw=3.5)= -54.4159 # GDT_score(maxd=10,maxw=3.8)= -57.9478 # GDT_score(maxd=10,maxw=4)= -56.023 # GDT_score(maxd=10,maxw=4.2)= -54.1537 # GDT_score(maxd=12,maxw=4.3)= -58.01 # GDT_score(maxd=12,maxw=4.5)= -56.1602 # GDT_score(maxd=12,maxw=4.7)= -54.3786 # GDT_score(maxd=14,maxw=5.2)= -53.808 # GDT_score(maxd=14,maxw=5.5)= -51.4487 # command:# ReadConformPDB reading from PDB file T0308.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0308)Q27.C and (T0308)Q29.C only 0.000 apart, marking (T0308)Q29.C as missing WARNING: atoms too close: (T0308)S28.N and (T0308)N30.N only 0.000 apart, marking (T0308)S28.N as missing WARNING: atoms too close: (T0308)S28.CA and (T0308)N30.CA only 0.000 apart, marking (T0308)S28.CA as missing WARNING: atoms too close: (T0308)H104.C and (T0308)R106.C only 0.000 apart, marking (T0308)R106.C as missing WARNING: atoms too close: (T0308)R105.N and (T0308)I107.N only 0.000 apart, marking (T0308)R105.N as missing WARNING: atoms too close: (T0308)R105.CA and (T0308)I107.CA only 0.000 apart, marking (T0308)R105.CA as missing # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0308.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0308)K22.C and (T0308)P23.C only 0.000 apart, marking (T0308)P23.C as missing WARNING: atoms too close: (T0308)P23.N and (T0308)S24.N only 0.000 apart, marking (T0308)P23.N as missing WARNING: atoms too close: (T0308)P23.CA and (T0308)S24.CA only 0.000 apart, marking (T0308)P23.CA as missing WARNING: atoms too close: (T0308)P100.C and (T0308)I102.C only 0.000 apart, marking (T0308)I102.C as missing WARNING: atoms too close: (T0308)D101.N and (T0308)K103.N only 0.000 apart, marking (T0308)D101.N as missing WARNING: atoms too close: (T0308)D101.CA and (T0308)K103.CA only 0.000 apart, marking (T0308)D101.CA as missing WARNING: atoms too close: (T0308)A121.C and (T0308)V125.C only 0.000 apart, marking (T0308)V125.C as missing WARNING: atoms too close: (T0308)V122.N and (T0308)K126.N only 0.000 apart, marking (T0308)V122.N as missing WARNING: atoms too close: (T0308)V122.CA and (T0308)K126.CA only 0.000 apart, marking (T0308)V122.CA as missing # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0308.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0308)K22.C and (T0308)P23.C only 0.000 apart, marking (T0308)P23.C as missing WARNING: atoms too close: (T0308)P23.N and (T0308)S24.N only 0.000 apart, marking (T0308)P23.N as missing WARNING: atoms too close: (T0308)P23.CA and (T0308)S24.CA only 0.000 apart, marking (T0308)P23.CA as missing WARNING: atoms too close: (T0308)H99.C and (T0308)I102.C only 0.000 apart, marking (T0308)I102.C as missing WARNING: atoms too close: (T0308)P100.N and (T0308)K103.N only 0.000 apart, marking (T0308)P100.N as missing WARNING: atoms too close: (T0308)P100.CA and (T0308)K103.CA only 0.000 apart, marking (T0308)P100.CA as missing WARNING: atoms too close: (T0308)V122.C and (T0308)V125.C only 0.000 apart, marking (T0308)V125.C as missing WARNING: atoms too close: (T0308)T123.N and (T0308)K126.N only 0.000 apart, marking (T0308)T123.N as missing WARNING: atoms too close: (T0308)T123.CA and (T0308)K126.CA only 0.000 apart, marking (T0308)T123.CA as missing # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../refine.model1.ts-submitted looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../refine.model2.ts-submitted looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../refine.model3.ts-submitted looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../refine.model4.ts-submitted looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../refine.model5.ts-submitted looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try1-opt2-chimera-D120-H142-mod16.pdb.gz looking for model 1 Skipped atom 914, because occupancy 1.000 <= existing 1.000 in T0308.try1-opt2-chimera-D120-H142-mod16.pdb.gz # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0308.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try12-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try2-chimera-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try2-chimera-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try2-chimera-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0308.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-9-4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr308-scwrl.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr308.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../3mer/decoys/3mer-try1-model.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//3mer-try1-model # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try1-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try1-opt1-scwrl # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try1-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try1-opt1 # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try1-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation 3mer//try1-opt2.gromacs0 # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try1-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try1-opt2 # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try1-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try1-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try1-opt2.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try1-opt2.unpack # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt1-scwrl # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt1 # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt2.BAC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt2.BAC # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt2.CAB.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt2.CAB # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt2.gromacs0 # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt2 # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt2.reversed.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt2.reversed # ReadConformPDB reading from PDB file ../3mer/decoys/T0308.try2-opt2.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3mer//try2-opt2.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-t5o2-try1-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-t5o2-try1-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-t5o2-try1-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-t5o2-try1-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-t5o2-try1-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-t5o2-try1-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-t5o2-try1-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-t5o2-try1-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try1-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try1-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try1-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try1-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try2-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try2-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try2-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try2-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try2-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try2-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try2-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try2-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try4-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try4-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try4-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try4-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try4-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try4-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try4-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try4-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try5-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try5-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try5-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try5-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try5-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try5-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try5-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try5-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try6-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try6-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try6-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try6-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try6-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try6-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try6-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try6-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try7-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try7-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try7-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try7-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try7-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try7-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try7-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try7-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try8-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try8-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try8-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try8-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try9-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try9-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try9-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try9-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.dimer-try9-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try9-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try10-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//try10-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try10-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//try10-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try10-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation dimer//try10-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try10-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//try10-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try10-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//try10-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try2-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try2-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try2-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try3-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try3-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try3-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try4-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try4-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try4-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try5-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try5-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try5-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try6-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try6-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try6-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try7-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try7-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try7-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try8-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try8-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try8-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0308.try9-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 Error: Reading chain from PDB file ../dimer/decoys/T0308.try9-opt2.gromacs0.pdb.gz failed. # naming current conformation dimer//try9-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try1-opt1-1o3yA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try1-opt1-1o3yA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try1-opt1-1o3yA.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try1-opt1-1o3yA.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try3-opt2-1o3yA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try3-opt2-1o3yA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try3-opt2-1o3yA.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try3-opt2-1o3yA.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try4-opt2-1o3yA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try4-opt2-1o3yA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try4-opt2-1o3yA.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try4-opt2-1o3yA.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try5-opt2-1o3yA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try5-opt2-1o3yA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-from-try5-opt2-1o3yA.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-from-try5-opt2-1o3yA.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try1-1o3yA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try1-1o3yA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try1-1o3yA.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try1-1o3yA.repack-nonPC # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1073697082.pdb -s /var/tmp/to_scwrl_1073697082.seq -o /var/tmp/from_scwrl_1073697082.pdb > /var/tmp/scwrl_1073697082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073697082.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2086668886.pdb -s /var/tmp/to_scwrl_2086668886.seq -o /var/tmp/from_scwrl_2086668886.pdb > /var/tmp/scwrl_2086668886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2086668886.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_242692703.pdb -s /var/tmp/to_scwrl_242692703.seq -o /var/tmp/from_scwrl_242692703.pdb > /var/tmp/scwrl_242692703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_242692703.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1459353270.pdb -s /var/tmp/to_scwrl_1459353270.seq -o /var/tmp/from_scwrl_1459353270.pdb > /var/tmp/scwrl_1459353270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1459353270.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1554010615.pdb -s /var/tmp/to_scwrl_1554010615.seq -o /var/tmp/from_scwrl_1554010615.pdb > /var/tmp/scwrl_1554010615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554010615.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1790998318.pdb -s /var/tmp/to_scwrl_1790998318.seq -o /var/tmp/from_scwrl_1790998318.pdb > /var/tmp/scwrl_1790998318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790998318.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_64185980.pdb -s /var/tmp/to_scwrl_64185980.seq -o /var/tmp/from_scwrl_64185980.pdb > /var/tmp/scwrl_64185980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64185980.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1271732648.pdb -s /var/tmp/to_scwrl_1271732648.seq -o /var/tmp/from_scwrl_1271732648.pdb > /var/tmp/scwrl_1271732648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271732648.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_368295018.pdb -s /var/tmp/to_scwrl_368295018.seq -o /var/tmp/from_scwrl_368295018.pdb > /var/tmp/scwrl_368295018.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368295018.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1734227214.pdb -s /var/tmp/to_scwrl_1734227214.seq -o /var/tmp/from_scwrl_1734227214.pdb > /var/tmp/scwrl_1734227214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1734227214.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_5862587.pdb -s /var/tmp/to_scwrl_5862587.seq -o /var/tmp/from_scwrl_5862587.pdb > /var/tmp/scwrl_5862587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_5862587.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_291554268.pdb -s /var/tmp/to_scwrl_291554268.seq -o /var/tmp/from_scwrl_291554268.pdb > /var/tmp/scwrl_291554268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_291554268.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_830362632.pdb -s /var/tmp/to_scwrl_830362632.seq -o /var/tmp/from_scwrl_830362632.pdb > /var/tmp/scwrl_830362632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_830362632.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_888112276.pdb -s /var/tmp/to_scwrl_888112276.seq -o /var/tmp/from_scwrl_888112276.pdb > /var/tmp/scwrl_888112276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_888112276.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1519012216.pdb -s /var/tmp/to_scwrl_1519012216.seq -o /var/tmp/from_scwrl_1519012216.pdb > /var/tmp/scwrl_1519012216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1519012216.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1078071743.pdb -s /var/tmp/to_scwrl_1078071743.seq -o /var/tmp/from_scwrl_1078071743.pdb > /var/tmp/scwrl_1078071743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078071743.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2001038013.pdb -s /var/tmp/to_scwrl_2001038013.seq -o /var/tmp/from_scwrl_2001038013.pdb > /var/tmp/scwrl_2001038013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2001038013.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_807932553.pdb -s /var/tmp/to_scwrl_807932553.seq -o /var/tmp/from_scwrl_807932553.pdb > /var/tmp/scwrl_807932553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_807932553.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2058696505.pdb -s /var/tmp/to_scwrl_2058696505.seq -o /var/tmp/from_scwrl_2058696505.pdb > /var/tmp/scwrl_2058696505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2058696505.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_59092856.pdb -s /var/tmp/to_scwrl_59092856.seq -o /var/tmp/from_scwrl_59092856.pdb > /var/tmp/scwrl_59092856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_59092856.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_983658086.pdb -s /var/tmp/to_scwrl_983658086.seq -o /var/tmp/from_scwrl_983658086.pdb > /var/tmp/scwrl_983658086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_983658086.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_347855043.pdb -s /var/tmp/to_scwrl_347855043.seq -o /var/tmp/from_scwrl_347855043.pdb > /var/tmp/scwrl_347855043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347855043.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_833187579.pdb -s /var/tmp/to_scwrl_833187579.seq -o /var/tmp/from_scwrl_833187579.pdb > /var/tmp/scwrl_833187579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_833187579.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1150047464.pdb -s /var/tmp/to_scwrl_1150047464.seq -o /var/tmp/from_scwrl_1150047464.pdb > /var/tmp/scwrl_1150047464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1150047464.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2057075805.pdb -s /var/tmp/to_scwrl_2057075805.seq -o /var/tmp/from_scwrl_2057075805.pdb > /var/tmp/scwrl_2057075805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2057075805.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1783197017.pdb -s /var/tmp/to_scwrl_1783197017.seq -o /var/tmp/from_scwrl_1783197017.pdb > /var/tmp/scwrl_1783197017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783197017.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1360222958.pdb -s /var/tmp/to_scwrl_1360222958.seq -o /var/tmp/from_scwrl_1360222958.pdb > /var/tmp/scwrl_1360222958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360222958.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_822664229.pdb -s /var/tmp/to_scwrl_822664229.seq -o /var/tmp/from_scwrl_822664229.pdb > /var/tmp/scwrl_822664229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_822664229.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_476462003.pdb -s /var/tmp/to_scwrl_476462003.seq -o /var/tmp/from_scwrl_476462003.pdb > /var/tmp/scwrl_476462003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_476462003.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_236586037.pdb -s /var/tmp/to_scwrl_236586037.seq -o /var/tmp/from_scwrl_236586037.pdb > /var/tmp/scwrl_236586037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236586037.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1380656007.pdb -s /var/tmp/to_scwrl_1380656007.seq -o /var/tmp/from_scwrl_1380656007.pdb > /var/tmp/scwrl_1380656007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380656007.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1550159084.pdb -s /var/tmp/to_scwrl_1550159084.seq -o /var/tmp/from_scwrl_1550159084.pdb > /var/tmp/scwrl_1550159084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550159084.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_175771276.pdb -s /var/tmp/to_scwrl_175771276.seq -o /var/tmp/from_scwrl_175771276.pdb > /var/tmp/scwrl_175771276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175771276.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1623348710.pdb -s /var/tmp/to_scwrl_1623348710.seq -o /var/tmp/from_scwrl_1623348710.pdb > /var/tmp/scwrl_1623348710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623348710.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_862028708.pdb -s /var/tmp/to_scwrl_862028708.seq -o /var/tmp/from_scwrl_862028708.pdb > /var/tmp/scwrl_862028708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862028708.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1729781892.pdb -s /var/tmp/to_scwrl_1729781892.seq -o /var/tmp/from_scwrl_1729781892.pdb > /var/tmp/scwrl_1729781892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1729781892.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1266863381.pdb -s /var/tmp/to_scwrl_1266863381.seq -o /var/tmp/from_scwrl_1266863381.pdb > /var/tmp/scwrl_1266863381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1266863381.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_926214689.pdb -s /var/tmp/to_scwrl_926214689.seq -o /var/tmp/from_scwrl_926214689.pdb > /var/tmp/scwrl_926214689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_926214689.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_854030894.pdb -s /var/tmp/to_scwrl_854030894.seq -o /var/tmp/from_scwrl_854030894.pdb > /var/tmp/scwrl_854030894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854030894.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1635158399.pdb -s /var/tmp/to_scwrl_1635158399.seq -o /var/tmp/from_scwrl_1635158399.pdb > /var/tmp/scwrl_1635158399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1635158399.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_512958256.pdb -s /var/tmp/to_scwrl_512958256.seq -o /var/tmp/from_scwrl_512958256.pdb > /var/tmp/scwrl_512958256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512958256.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_859893481.pdb -s /var/tmp/to_scwrl_859893481.seq -o /var/tmp/from_scwrl_859893481.pdb > /var/tmp/scwrl_859893481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_859893481.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1926712668.pdb -s /var/tmp/to_scwrl_1926712668.seq -o /var/tmp/from_scwrl_1926712668.pdb > /var/tmp/scwrl_1926712668.log Error: Couldn't open file /var/tmp/from_scwrl_1926712668.pdb or /var/tmp/from_scwrl_1926712668.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1926712668_b.pdb or decoys//var/tmp/from_scwrl_1926712668_b.pdb.gz for input Trying /var/tmp/from_scwrl_1926712668_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1926712668_b.pdb or /var/tmp/from_scwrl_1926712668_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1926712668_a.pdb or decoys//var/tmp/from_scwrl_1926712668_a.pdb.gz for input Trying /var/tmp/from_scwrl_1926712668_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1926712668_a.pdb or /var/tmp/from_scwrl_1926712668_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1926712668.pdb or /var/tmp/from_scwrl_1926712668_b.pdb or /var/tmp/from_scwrl_1926712668_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1343320888.pdb -s /var/tmp/to_scwrl_1343320888.seq -o /var/tmp/from_scwrl_1343320888.pdb > /var/tmp/scwrl_1343320888.log Error: Couldn't open file /var/tmp/from_scwrl_1343320888.pdb or /var/tmp/from_scwrl_1343320888.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1343320888_b.pdb or decoys//var/tmp/from_scwrl_1343320888_b.pdb.gz for input Trying /var/tmp/from_scwrl_1343320888_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1343320888_b.pdb or /var/tmp/from_scwrl_1343320888_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1343320888_a.pdb or decoys//var/tmp/from_scwrl_1343320888_a.pdb.gz for input Trying /var/tmp/from_scwrl_1343320888_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1343320888_a.pdb or /var/tmp/from_scwrl_1343320888_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1343320888.pdb or /var/tmp/from_scwrl_1343320888_b.pdb or /var/tmp/from_scwrl_1343320888_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1748005756.pdb -s /var/tmp/to_scwrl_1748005756.seq -o /var/tmp/from_scwrl_1748005756.pdb > /var/tmp/scwrl_1748005756.log Error: Couldn't open file /var/tmp/from_scwrl_1748005756.pdb or /var/tmp/from_scwrl_1748005756.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1748005756_b.pdb or decoys//var/tmp/from_scwrl_1748005756_b.pdb.gz for input Trying /var/tmp/from_scwrl_1748005756_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1748005756_b.pdb or /var/tmp/from_scwrl_1748005756_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1748005756_a.pdb or decoys//var/tmp/from_scwrl_1748005756_a.pdb.gz for input Trying /var/tmp/from_scwrl_1748005756_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1748005756_a.pdb or /var/tmp/from_scwrl_1748005756_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1748005756.pdb or /var/tmp/from_scwrl_1748005756_b.pdb or /var/tmp/from_scwrl_1748005756_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1298241237.pdb -s /var/tmp/to_scwrl_1298241237.seq -o /var/tmp/from_scwrl_1298241237.pdb > /var/tmp/scwrl_1298241237.log Error: Couldn't open file /var/tmp/from_scwrl_1298241237.pdb or /var/tmp/from_scwrl_1298241237.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1298241237_b.pdb or decoys//var/tmp/from_scwrl_1298241237_b.pdb.gz for input Trying /var/tmp/from_scwrl_1298241237_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1298241237_b.pdb or /var/tmp/from_scwrl_1298241237_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1298241237_a.pdb or decoys//var/tmp/from_scwrl_1298241237_a.pdb.gz for input Trying /var/tmp/from_scwrl_1298241237_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1298241237_a.pdb or /var/tmp/from_scwrl_1298241237_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1298241237.pdb or /var/tmp/from_scwrl_1298241237_b.pdb or /var/tmp/from_scwrl_1298241237_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_273908985.pdb -s /var/tmp/to_scwrl_273908985.seq -o /var/tmp/from_scwrl_273908985.pdb > /var/tmp/scwrl_273908985.log Error: Couldn't open file /var/tmp/from_scwrl_273908985.pdb or /var/tmp/from_scwrl_273908985.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_273908985_b.pdb or decoys//var/tmp/from_scwrl_273908985_b.pdb.gz for input Trying /var/tmp/from_scwrl_273908985_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_273908985_b.pdb or /var/tmp/from_scwrl_273908985_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_273908985_a.pdb or decoys//var/tmp/from_scwrl_273908985_a.pdb.gz for input Trying /var/tmp/from_scwrl_273908985_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_273908985_a.pdb or /var/tmp/from_scwrl_273908985_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_273908985.pdb or /var/tmp/from_scwrl_273908985_b.pdb or /var/tmp/from_scwrl_273908985_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1601560122.pdb -s /var/tmp/to_scwrl_1601560122.seq -o /var/tmp/from_scwrl_1601560122.pdb > /var/tmp/scwrl_1601560122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1601560122.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2106173790.pdb -s /var/tmp/to_scwrl_2106173790.seq -o /var/tmp/from_scwrl_2106173790.pdb > /var/tmp/scwrl_2106173790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2106173790.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_185121843.pdb -s /var/tmp/to_scwrl_185121843.seq -o /var/tmp/from_scwrl_185121843.pdb > /var/tmp/scwrl_185121843.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_185121843.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1660652979.pdb -s /var/tmp/to_scwrl_1660652979.seq -o /var/tmp/from_scwrl_1660652979.pdb > /var/tmp/scwrl_1660652979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660652979.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_942348229.pdb -s /var/tmp/to_scwrl_942348229.seq -o /var/tmp/from_scwrl_942348229.pdb > /var/tmp/scwrl_942348229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942348229.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_532976886.pdb -s /var/tmp/to_scwrl_532976886.seq -o /var/tmp/from_scwrl_532976886.pdb > /var/tmp/scwrl_532976886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_532976886.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_346356911.pdb -s /var/tmp/to_scwrl_346356911.seq -o /var/tmp/from_scwrl_346356911.pdb > /var/tmp/scwrl_346356911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_346356911.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2092395694.pdb -s /var/tmp/to_scwrl_2092395694.seq -o /var/tmp/from_scwrl_2092395694.pdb > /var/tmp/scwrl_2092395694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2092395694.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_442569044.pdb -s /var/tmp/to_scwrl_442569044.seq -o /var/tmp/from_scwrl_442569044.pdb > /var/tmp/scwrl_442569044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_442569044.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2129553929.pdb -s /var/tmp/to_scwrl_2129553929.seq -o /var/tmp/from_scwrl_2129553929.pdb > /var/tmp/scwrl_2129553929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2129553929.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1305135005.pdb -s /var/tmp/to_scwrl_1305135005.seq -o /var/tmp/from_scwrl_1305135005.pdb > /var/tmp/scwrl_1305135005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305135005.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1265233272.pdb -s /var/tmp/to_scwrl_1265233272.seq -o /var/tmp/from_scwrl_1265233272.pdb > /var/tmp/scwrl_1265233272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1265233272.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_458532285.pdb -s /var/tmp/to_scwrl_458532285.seq -o /var/tmp/from_scwrl_458532285.pdb > /var/tmp/scwrl_458532285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_458532285.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1541721042.pdb -s /var/tmp/to_scwrl_1541721042.seq -o /var/tmp/from_scwrl_1541721042.pdb > /var/tmp/scwrl_1541721042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541721042.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_498405634.pdb -s /var/tmp/to_scwrl_498405634.seq -o /var/tmp/from_scwrl_498405634.pdb > /var/tmp/scwrl_498405634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498405634.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2008691370.pdb -s /var/tmp/to_scwrl_2008691370.seq -o /var/tmp/from_scwrl_2008691370.pdb > /var/tmp/scwrl_2008691370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2008691370.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1717492319.pdb -s /var/tmp/to_scwrl_1717492319.seq -o /var/tmp/from_scwrl_1717492319.pdb > /var/tmp/scwrl_1717492319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1717492319.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2121754344.pdb -s /var/tmp/to_scwrl_2121754344.seq -o /var/tmp/from_scwrl_2121754344.pdb > /var/tmp/scwrl_2121754344.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2121754344.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_723236431.pdb -s /var/tmp/to_scwrl_723236431.seq -o /var/tmp/from_scwrl_723236431.pdb > /var/tmp/scwrl_723236431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_723236431.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1299790564.pdb -s /var/tmp/to_scwrl_1299790564.seq -o /var/tmp/from_scwrl_1299790564.pdb > /var/tmp/scwrl_1299790564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1299790564.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1241134079.pdb -s /var/tmp/to_scwrl_1241134079.seq -o /var/tmp/from_scwrl_1241134079.pdb > /var/tmp/scwrl_1241134079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1241134079.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1649451119.pdb -s /var/tmp/to_scwrl_1649451119.seq -o /var/tmp/from_scwrl_1649451119.pdb > /var/tmp/scwrl_1649451119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1649451119.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_6337811.pdb -s /var/tmp/to_scwrl_6337811.seq -o /var/tmp/from_scwrl_6337811.pdb > /var/tmp/scwrl_6337811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6337811.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 94, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 96, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 114, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 116, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 118, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 195, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 197, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 201, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 203, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 298, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 302, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 342, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 344, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 348, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_728808832.pdb -s /var/tmp/to_scwrl_728808832.seq -o /var/tmp/from_scwrl_728808832.pdb > /var/tmp/scwrl_728808832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_728808832.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_14925729.pdb -s /var/tmp/to_scwrl_14925729.seq -o /var/tmp/from_scwrl_14925729.pdb > /var/tmp/scwrl_14925729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_14925729.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_866231292.pdb -s /var/tmp/to_scwrl_866231292.seq -o /var/tmp/from_scwrl_866231292.pdb > /var/tmp/scwrl_866231292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_866231292.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_508037853.pdb -s /var/tmp/to_scwrl_508037853.seq -o /var/tmp/from_scwrl_508037853.pdb > /var/tmp/scwrl_508037853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508037853.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1358246617.pdb -s /var/tmp/to_scwrl_1358246617.seq -o /var/tmp/from_scwrl_1358246617.pdb > /var/tmp/scwrl_1358246617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358246617.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_466753401.pdb -s /var/tmp/to_scwrl_466753401.seq -o /var/tmp/from_scwrl_466753401.pdb > /var/tmp/scwrl_466753401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466753401.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1806279090.pdb -s /var/tmp/to_scwrl_1806279090.seq -o /var/tmp/from_scwrl_1806279090.pdb > /var/tmp/scwrl_1806279090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1806279090.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1632155602.pdb -s /var/tmp/to_scwrl_1632155602.seq -o /var/tmp/from_scwrl_1632155602.pdb > /var/tmp/scwrl_1632155602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1632155602.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2068313523.pdb -s /var/tmp/to_scwrl_2068313523.seq -o /var/tmp/from_scwrl_2068313523.pdb > /var/tmp/scwrl_2068313523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2068313523.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1764969234.pdb -s /var/tmp/to_scwrl_1764969234.seq -o /var/tmp/from_scwrl_1764969234.pdb > /var/tmp/scwrl_1764969234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1764969234.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1817277445.pdb -s /var/tmp/to_scwrl_1817277445.seq -o /var/tmp/from_scwrl_1817277445.pdb > /var/tmp/scwrl_1817277445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1817277445.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1581482855.pdb -s /var/tmp/to_scwrl_1581482855.seq -o /var/tmp/from_scwrl_1581482855.pdb > /var/tmp/scwrl_1581482855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581482855.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_559833816.pdb -s /var/tmp/to_scwrl_559833816.seq -o /var/tmp/from_scwrl_559833816.pdb > /var/tmp/scwrl_559833816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559833816.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_202770684.pdb -s /var/tmp/to_scwrl_202770684.seq -o /var/tmp/from_scwrl_202770684.pdb > /var/tmp/scwrl_202770684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202770684.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1927839767.pdb -s /var/tmp/to_scwrl_1927839767.seq -o /var/tmp/from_scwrl_1927839767.pdb > /var/tmp/scwrl_1927839767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1927839767.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_504745863.pdb -s /var/tmp/to_scwrl_504745863.seq -o /var/tmp/from_scwrl_504745863.pdb > /var/tmp/scwrl_504745863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_504745863.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_645339728.pdb -s /var/tmp/to_scwrl_645339728.seq -o /var/tmp/from_scwrl_645339728.pdb > /var/tmp/scwrl_645339728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_645339728.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1909910049.pdb -s /var/tmp/to_scwrl_1909910049.seq -o /var/tmp/from_scwrl_1909910049.pdb > /var/tmp/scwrl_1909910049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909910049.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1809880868.pdb -s /var/tmp/to_scwrl_1809880868.seq -o /var/tmp/from_scwrl_1809880868.pdb > /var/tmp/scwrl_1809880868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1809880868.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1910573000.pdb -s /var/tmp/to_scwrl_1910573000.seq -o /var/tmp/from_scwrl_1910573000.pdb > /var/tmp/scwrl_1910573000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1910573000.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_220958687.pdb -s /var/tmp/to_scwrl_220958687.seq -o /var/tmp/from_scwrl_220958687.pdb > /var/tmp/scwrl_220958687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220958687.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1204118264.pdb -s /var/tmp/to_scwrl_1204118264.seq -o /var/tmp/from_scwrl_1204118264.pdb > /var/tmp/scwrl_1204118264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1204118264.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_261494987.pdb -s /var/tmp/to_scwrl_261494987.seq -o /var/tmp/from_scwrl_261494987.pdb > /var/tmp/scwrl_261494987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_261494987.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_82166410.pdb -s /var/tmp/to_scwrl_82166410.seq -o /var/tmp/from_scwrl_82166410.pdb > /var/tmp/scwrl_82166410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_82166410.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_774126937.pdb -s /var/tmp/to_scwrl_774126937.seq -o /var/tmp/from_scwrl_774126937.pdb > /var/tmp/scwrl_774126937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_774126937.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_235765685.pdb -s /var/tmp/to_scwrl_235765685.seq -o /var/tmp/from_scwrl_235765685.pdb > /var/tmp/scwrl_235765685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_235765685.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_805402842.pdb -s /var/tmp/to_scwrl_805402842.seq -o /var/tmp/from_scwrl_805402842.pdb > /var/tmp/scwrl_805402842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_805402842.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2073917501.pdb -s /var/tmp/to_scwrl_2073917501.seq -o /var/tmp/from_scwrl_2073917501.pdb > /var/tmp/scwrl_2073917501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2073917501.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1476899764.pdb -s /var/tmp/to_scwrl_1476899764.seq -o /var/tmp/from_scwrl_1476899764.pdb > /var/tmp/scwrl_1476899764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1476899764.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_307370314.pdb -s /var/tmp/to_scwrl_307370314.seq -o /var/tmp/from_scwrl_307370314.pdb > /var/tmp/scwrl_307370314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_307370314.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2080255312.pdb -s /var/tmp/to_scwrl_2080255312.seq -o /var/tmp/from_scwrl_2080255312.pdb > /var/tmp/scwrl_2080255312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080255312.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_58224949.pdb -s /var/tmp/to_scwrl_58224949.seq -o /var/tmp/from_scwrl_58224949.pdb > /var/tmp/scwrl_58224949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58224949.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_322296043.pdb -s /var/tmp/to_scwrl_322296043.seq -o /var/tmp/from_scwrl_322296043.pdb > /var/tmp/scwrl_322296043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322296043.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_799002957.pdb -s /var/tmp/to_scwrl_799002957.seq -o /var/tmp/from_scwrl_799002957.pdb > /var/tmp/scwrl_799002957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_799002957.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_566262803.pdb -s /var/tmp/to_scwrl_566262803.seq -o /var/tmp/from_scwrl_566262803.pdb > /var/tmp/scwrl_566262803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_566262803.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1680542660.pdb -s /var/tmp/to_scwrl_1680542660.seq -o /var/tmp/from_scwrl_1680542660.pdb > /var/tmp/scwrl_1680542660.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1680542660.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1265756357.pdb -s /var/tmp/to_scwrl_1265756357.seq -o /var/tmp/from_scwrl_1265756357.pdb > /var/tmp/scwrl_1265756357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1265756357.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_225058246.pdb -s /var/tmp/to_scwrl_225058246.seq -o /var/tmp/from_scwrl_225058246.pdb > /var/tmp/scwrl_225058246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225058246.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1165214615.pdb -s /var/tmp/to_scwrl_1165214615.seq -o /var/tmp/from_scwrl_1165214615.pdb > /var/tmp/scwrl_1165214615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1165214615.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1186586233.pdb -s /var/tmp/to_scwrl_1186586233.seq -o /var/tmp/from_scwrl_1186586233.pdb > /var/tmp/scwrl_1186586233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1186586233.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1990027480.pdb -s /var/tmp/to_scwrl_1990027480.seq -o /var/tmp/from_scwrl_1990027480.pdb > /var/tmp/scwrl_1990027480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990027480.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_835008414.pdb -s /var/tmp/to_scwrl_835008414.seq -o /var/tmp/from_scwrl_835008414.pdb > /var/tmp/scwrl_835008414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_835008414.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_620585443.pdb -s /var/tmp/to_scwrl_620585443.seq -o /var/tmp/from_scwrl_620585443.pdb > /var/tmp/scwrl_620585443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620585443.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_402377650.pdb -s /var/tmp/to_scwrl_402377650.seq -o /var/tmp/from_scwrl_402377650.pdb > /var/tmp/scwrl_402377650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402377650.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1037779098.pdb -s /var/tmp/to_scwrl_1037779098.seq -o /var/tmp/from_scwrl_1037779098.pdb > /var/tmp/scwrl_1037779098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1037779098.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_400941563.pdb -s /var/tmp/to_scwrl_400941563.seq -o /var/tmp/from_scwrl_400941563.pdb > /var/tmp/scwrl_400941563.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_400941563.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_907123513.pdb -s /var/tmp/to_scwrl_907123513.seq -o /var/tmp/from_scwrl_907123513.pdb > /var/tmp/scwrl_907123513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_907123513.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1683118825.pdb -s /var/tmp/to_scwrl_1683118825.seq -o /var/tmp/from_scwrl_1683118825.pdb > /var/tmp/scwrl_1683118825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1683118825.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_163367965.pdb -s /var/tmp/to_scwrl_163367965.seq -o /var/tmp/from_scwrl_163367965.pdb > /var/tmp/scwrl_163367965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_163367965.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_569520735.pdb -s /var/tmp/to_scwrl_569520735.seq -o /var/tmp/from_scwrl_569520735.pdb > /var/tmp/scwrl_569520735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_569520735.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1446208179.pdb -s /var/tmp/to_scwrl_1446208179.seq -o /var/tmp/from_scwrl_1446208179.pdb > /var/tmp/scwrl_1446208179.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446208179.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_384326652.pdb -s /var/tmp/to_scwrl_384326652.seq -o /var/tmp/from_scwrl_384326652.pdb > /var/tmp/scwrl_384326652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_384326652.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1773638999.pdb -s /var/tmp/to_scwrl_1773638999.seq -o /var/tmp/from_scwrl_1773638999.pdb > /var/tmp/scwrl_1773638999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1773638999.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1707703166.pdb -s /var/tmp/to_scwrl_1707703166.seq -o /var/tmp/from_scwrl_1707703166.pdb > /var/tmp/scwrl_1707703166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1707703166.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_466493063.pdb -s /var/tmp/to_scwrl_466493063.seq -o /var/tmp/from_scwrl_466493063.pdb > /var/tmp/scwrl_466493063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466493063.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_400282289.pdb -s /var/tmp/to_scwrl_400282289.seq -o /var/tmp/from_scwrl_400282289.pdb > /var/tmp/scwrl_400282289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_400282289.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1943468851.pdb -s /var/tmp/to_scwrl_1943468851.seq -o /var/tmp/from_scwrl_1943468851.pdb > /var/tmp/scwrl_1943468851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943468851.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1271895904.pdb -s /var/tmp/to_scwrl_1271895904.seq -o /var/tmp/from_scwrl_1271895904.pdb > /var/tmp/scwrl_1271895904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271895904.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_326716143.pdb -s /var/tmp/to_scwrl_326716143.seq -o /var/tmp/from_scwrl_326716143.pdb > /var/tmp/scwrl_326716143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326716143.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1272884968.pdb -s /var/tmp/to_scwrl_1272884968.seq -o /var/tmp/from_scwrl_1272884968.pdb > /var/tmp/scwrl_1272884968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272884968.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1579266218.pdb -s /var/tmp/to_scwrl_1579266218.seq -o /var/tmp/from_scwrl_1579266218.pdb > /var/tmp/scwrl_1579266218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1579266218.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_259487808.pdb -s /var/tmp/to_scwrl_259487808.seq -o /var/tmp/from_scwrl_259487808.pdb > /var/tmp/scwrl_259487808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_259487808.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1331109918.pdb -s /var/tmp/to_scwrl_1331109918.seq -o /var/tmp/from_scwrl_1331109918.pdb > /var/tmp/scwrl_1331109918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331109918.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1901562262.pdb -s /var/tmp/to_scwrl_1901562262.seq -o /var/tmp/from_scwrl_1901562262.pdb > /var/tmp/scwrl_1901562262.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1901562262.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1058490765.pdb -s /var/tmp/to_scwrl_1058490765.seq -o /var/tmp/from_scwrl_1058490765.pdb > /var/tmp/scwrl_1058490765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058490765.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1897372721.pdb -s /var/tmp/to_scwrl_1897372721.seq -o /var/tmp/from_scwrl_1897372721.pdb > /var/tmp/scwrl_1897372721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1897372721.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1434621275.pdb -s /var/tmp/to_scwrl_1434621275.seq -o /var/tmp/from_scwrl_1434621275.pdb > /var/tmp/scwrl_1434621275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1434621275.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_176763475.pdb -s /var/tmp/to_scwrl_176763475.seq -o /var/tmp/from_scwrl_176763475.pdb > /var/tmp/scwrl_176763475.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176763475.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2122430967.pdb -s /var/tmp/to_scwrl_2122430967.seq -o /var/tmp/from_scwrl_2122430967.pdb > /var/tmp/scwrl_2122430967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2122430967.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_452352245.pdb -s /var/tmp/to_scwrl_452352245.seq -o /var/tmp/from_scwrl_452352245.pdb > /var/tmp/scwrl_452352245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_452352245.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1363349708.pdb -s /var/tmp/to_scwrl_1363349708.seq -o /var/tmp/from_scwrl_1363349708.pdb > /var/tmp/scwrl_1363349708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1363349708.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1964974801.pdb -s /var/tmp/to_scwrl_1964974801.seq -o /var/tmp/from_scwrl_1964974801.pdb > /var/tmp/scwrl_1964974801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964974801.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1287360658.pdb -s /var/tmp/to_scwrl_1287360658.seq -o /var/tmp/from_scwrl_1287360658.pdb > /var/tmp/scwrl_1287360658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287360658.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1983935151.pdb -s /var/tmp/to_scwrl_1983935151.seq -o /var/tmp/from_scwrl_1983935151.pdb > /var/tmp/scwrl_1983935151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983935151.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_219868804.pdb -s /var/tmp/to_scwrl_219868804.seq -o /var/tmp/from_scwrl_219868804.pdb > /var/tmp/scwrl_219868804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219868804.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_177656110.pdb -s /var/tmp/to_scwrl_177656110.seq -o /var/tmp/from_scwrl_177656110.pdb > /var/tmp/scwrl_177656110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_177656110.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_237393067.pdb -s /var/tmp/to_scwrl_237393067.seq -o /var/tmp/from_scwrl_237393067.pdb > /var/tmp/scwrl_237393067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_237393067.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1126992316.pdb -s /var/tmp/to_scwrl_1126992316.seq -o /var/tmp/from_scwrl_1126992316.pdb > /var/tmp/scwrl_1126992316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126992316.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1860774935.pdb -s /var/tmp/to_scwrl_1860774935.seq -o /var/tmp/from_scwrl_1860774935.pdb > /var/tmp/scwrl_1860774935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860774935.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_400761032.pdb -s /var/tmp/to_scwrl_400761032.seq -o /var/tmp/from_scwrl_400761032.pdb > /var/tmp/scwrl_400761032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_400761032.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1696513051.pdb -s /var/tmp/to_scwrl_1696513051.seq -o /var/tmp/from_scwrl_1696513051.pdb > /var/tmp/scwrl_1696513051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1696513051.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1159499467.pdb -s /var/tmp/to_scwrl_1159499467.seq -o /var/tmp/from_scwrl_1159499467.pdb > /var/tmp/scwrl_1159499467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1159499467.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_785087685.pdb -s /var/tmp/to_scwrl_785087685.seq -o /var/tmp/from_scwrl_785087685.pdb > /var/tmp/scwrl_785087685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_785087685.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1322668403.pdb -s /var/tmp/to_scwrl_1322668403.seq -o /var/tmp/from_scwrl_1322668403.pdb > /var/tmp/scwrl_1322668403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1322668403.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_719718988.pdb -s /var/tmp/to_scwrl_719718988.seq -o /var/tmp/from_scwrl_719718988.pdb > /var/tmp/scwrl_719718988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719718988.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1251580747.pdb -s /var/tmp/to_scwrl_1251580747.seq -o /var/tmp/from_scwrl_1251580747.pdb > /var/tmp/scwrl_1251580747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1251580747.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1722950692.pdb -s /var/tmp/to_scwrl_1722950692.seq -o /var/tmp/from_scwrl_1722950692.pdb > /var/tmp/scwrl_1722950692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722950692.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_515704192.pdb -s /var/tmp/to_scwrl_515704192.seq -o /var/tmp/from_scwrl_515704192.pdb > /var/tmp/scwrl_515704192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_515704192.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_375993005.pdb -s /var/tmp/to_scwrl_375993005.seq -o /var/tmp/from_scwrl_375993005.pdb > /var/tmp/scwrl_375993005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_375993005.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2049666835.pdb -s /var/tmp/to_scwrl_2049666835.seq -o /var/tmp/from_scwrl_2049666835.pdb > /var/tmp/scwrl_2049666835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2049666835.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1788589161.pdb -s /var/tmp/to_scwrl_1788589161.seq -o /var/tmp/from_scwrl_1788589161.pdb > /var/tmp/scwrl_1788589161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1788589161.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1955259223.pdb -s /var/tmp/to_scwrl_1955259223.seq -o /var/tmp/from_scwrl_1955259223.pdb > /var/tmp/scwrl_1955259223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1955259223.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_161670996.pdb -s /var/tmp/to_scwrl_161670996.seq -o /var/tmp/from_scwrl_161670996.pdb > /var/tmp/scwrl_161670996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161670996.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_972215433.pdb -s /var/tmp/to_scwrl_972215433.seq -o /var/tmp/from_scwrl_972215433.pdb > /var/tmp/scwrl_972215433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972215433.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1709337838.pdb -s /var/tmp/to_scwrl_1709337838.seq -o /var/tmp/from_scwrl_1709337838.pdb > /var/tmp/scwrl_1709337838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1709337838.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1220161760.pdb -s /var/tmp/to_scwrl_1220161760.seq -o /var/tmp/from_scwrl_1220161760.pdb > /var/tmp/scwrl_1220161760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1220161760.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_722104507.pdb -s /var/tmp/to_scwrl_722104507.seq -o /var/tmp/from_scwrl_722104507.pdb > /var/tmp/scwrl_722104507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_722104507.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_996475468.pdb -s /var/tmp/to_scwrl_996475468.seq -o /var/tmp/from_scwrl_996475468.pdb > /var/tmp/scwrl_996475468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996475468.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1396925235.pdb -s /var/tmp/to_scwrl_1396925235.seq -o /var/tmp/from_scwrl_1396925235.pdb > /var/tmp/scwrl_1396925235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1396925235.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_697051827.pdb -s /var/tmp/to_scwrl_697051827.seq -o /var/tmp/from_scwrl_697051827.pdb > /var/tmp/scwrl_697051827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697051827.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1448827712.pdb -s /var/tmp/to_scwrl_1448827712.seq -o /var/tmp/from_scwrl_1448827712.pdb > /var/tmp/scwrl_1448827712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1448827712.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 82, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 84, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 86, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 88, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 143, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 145, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 149, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 151, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 178, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 180, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 182, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 184, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 210, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 212, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 214, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 216, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 430, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 432, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 546, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 548, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 550, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 552, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_612791298.pdb -s /var/tmp/to_scwrl_612791298.seq -o /var/tmp/from_scwrl_612791298.pdb > /var/tmp/scwrl_612791298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612791298.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_514542981.pdb -s /var/tmp/to_scwrl_514542981.seq -o /var/tmp/from_scwrl_514542981.pdb > /var/tmp/scwrl_514542981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514542981.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_588704724.pdb -s /var/tmp/to_scwrl_588704724.seq -o /var/tmp/from_scwrl_588704724.pdb > /var/tmp/scwrl_588704724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_588704724.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_449242802.pdb -s /var/tmp/to_scwrl_449242802.seq -o /var/tmp/from_scwrl_449242802.pdb > /var/tmp/scwrl_449242802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_449242802.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_734411785.pdb -s /var/tmp/to_scwrl_734411785.seq -o /var/tmp/from_scwrl_734411785.pdb > /var/tmp/scwrl_734411785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_734411785.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_766360834.pdb -s /var/tmp/to_scwrl_766360834.seq -o /var/tmp/from_scwrl_766360834.pdb > /var/tmp/scwrl_766360834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_766360834.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_686635870.pdb -s /var/tmp/to_scwrl_686635870.seq -o /var/tmp/from_scwrl_686635870.pdb > /var/tmp/scwrl_686635870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_686635870.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1861404102.pdb -s /var/tmp/to_scwrl_1861404102.seq -o /var/tmp/from_scwrl_1861404102.pdb > /var/tmp/scwrl_1861404102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861404102.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_479652123.pdb -s /var/tmp/to_scwrl_479652123.seq -o /var/tmp/from_scwrl_479652123.pdb > /var/tmp/scwrl_479652123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_479652123.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1087396901.pdb -s /var/tmp/to_scwrl_1087396901.seq -o /var/tmp/from_scwrl_1087396901.pdb > /var/tmp/scwrl_1087396901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1087396901.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1410433506.pdb -s /var/tmp/to_scwrl_1410433506.seq -o /var/tmp/from_scwrl_1410433506.pdb > /var/tmp/scwrl_1410433506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1410433506.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1639151590.pdb -s /var/tmp/to_scwrl_1639151590.seq -o /var/tmp/from_scwrl_1639151590.pdb > /var/tmp/scwrl_1639151590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1639151590.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1872484586.pdb -s /var/tmp/to_scwrl_1872484586.seq -o /var/tmp/from_scwrl_1872484586.pdb > /var/tmp/scwrl_1872484586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1872484586.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_585618264.pdb -s /var/tmp/to_scwrl_585618264.seq -o /var/tmp/from_scwrl_585618264.pdb > /var/tmp/scwrl_585618264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_585618264.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_211386931.pdb -s /var/tmp/to_scwrl_211386931.seq -o /var/tmp/from_scwrl_211386931.pdb > /var/tmp/scwrl_211386931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211386931.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_976581687.pdb -s /var/tmp/to_scwrl_976581687.seq -o /var/tmp/from_scwrl_976581687.pdb > /var/tmp/scwrl_976581687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976581687.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_161085309.pdb -s /var/tmp/to_scwrl_161085309.seq -o /var/tmp/from_scwrl_161085309.pdb > /var/tmp/scwrl_161085309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161085309.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_727091124.pdb -s /var/tmp/to_scwrl_727091124.seq -o /var/tmp/from_scwrl_727091124.pdb > /var/tmp/scwrl_727091124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_727091124.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1352574691.pdb -s /var/tmp/to_scwrl_1352574691.seq -o /var/tmp/from_scwrl_1352574691.pdb > /var/tmp/scwrl_1352574691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1352574691.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_63268498.pdb -s /var/tmp/to_scwrl_63268498.seq -o /var/tmp/from_scwrl_63268498.pdb > /var/tmp/scwrl_63268498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63268498.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_368196638.pdb -s /var/tmp/to_scwrl_368196638.seq -o /var/tmp/from_scwrl_368196638.pdb > /var/tmp/scwrl_368196638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368196638.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1160350268.pdb -s /var/tmp/to_scwrl_1160350268.seq -o /var/tmp/from_scwrl_1160350268.pdb > /var/tmp/scwrl_1160350268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160350268.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_224939494.pdb -s /var/tmp/to_scwrl_224939494.seq -o /var/tmp/from_scwrl_224939494.pdb > /var/tmp/scwrl_224939494.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_224939494.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1340412070.pdb -s /var/tmp/to_scwrl_1340412070.seq -o /var/tmp/from_scwrl_1340412070.pdb > /var/tmp/scwrl_1340412070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1340412070.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_722204460.pdb -s /var/tmp/to_scwrl_722204460.seq -o /var/tmp/from_scwrl_722204460.pdb > /var/tmp/scwrl_722204460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_722204460.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1445101255.pdb -s /var/tmp/to_scwrl_1445101255.seq -o /var/tmp/from_scwrl_1445101255.pdb > /var/tmp/scwrl_1445101255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1445101255.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2062516577.pdb -s /var/tmp/to_scwrl_2062516577.seq -o /var/tmp/from_scwrl_2062516577.pdb > /var/tmp/scwrl_2062516577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2062516577.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1718679927.pdb -s /var/tmp/to_scwrl_1718679927.seq -o /var/tmp/from_scwrl_1718679927.pdb > /var/tmp/scwrl_1718679927.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1718679927.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_694542844.pdb -s /var/tmp/to_scwrl_694542844.seq -o /var/tmp/from_scwrl_694542844.pdb > /var/tmp/scwrl_694542844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694542844.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_612084757.pdb -s /var/tmp/to_scwrl_612084757.seq -o /var/tmp/from_scwrl_612084757.pdb > /var/tmp/scwrl_612084757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612084757.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1020023993.pdb -s /var/tmp/to_scwrl_1020023993.seq -o /var/tmp/from_scwrl_1020023993.pdb > /var/tmp/scwrl_1020023993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020023993.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1307334141.pdb -s /var/tmp/to_scwrl_1307334141.seq -o /var/tmp/from_scwrl_1307334141.pdb > /var/tmp/scwrl_1307334141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307334141.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1126627738.pdb -s /var/tmp/to_scwrl_1126627738.seq -o /var/tmp/from_scwrl_1126627738.pdb > /var/tmp/scwrl_1126627738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126627738.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1608728717.pdb -s /var/tmp/to_scwrl_1608728717.seq -o /var/tmp/from_scwrl_1608728717.pdb > /var/tmp/scwrl_1608728717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1608728717.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1756576944.pdb -s /var/tmp/to_scwrl_1756576944.seq -o /var/tmp/from_scwrl_1756576944.pdb > /var/tmp/scwrl_1756576944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1756576944.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1861039523.pdb -s /var/tmp/to_scwrl_1861039523.seq -o /var/tmp/from_scwrl_1861039523.pdb > /var/tmp/scwrl_1861039523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861039523.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_227605904.pdb -s /var/tmp/to_scwrl_227605904.seq -o /var/tmp/from_scwrl_227605904.pdb > /var/tmp/scwrl_227605904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_227605904.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_295729167.pdb -s /var/tmp/to_scwrl_295729167.seq -o /var/tmp/from_scwrl_295729167.pdb > /var/tmp/scwrl_295729167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295729167.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1574959978.pdb -s /var/tmp/to_scwrl_1574959978.seq -o /var/tmp/from_scwrl_1574959978.pdb > /var/tmp/scwrl_1574959978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1574959978.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_707258027.pdb -s /var/tmp/to_scwrl_707258027.seq -o /var/tmp/from_scwrl_707258027.pdb > /var/tmp/scwrl_707258027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_707258027.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1383126068.pdb -s /var/tmp/to_scwrl_1383126068.seq -o /var/tmp/from_scwrl_1383126068.pdb > /var/tmp/scwrl_1383126068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1383126068.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_837909839.pdb -s /var/tmp/to_scwrl_837909839.seq -o /var/tmp/from_scwrl_837909839.pdb > /var/tmp/scwrl_837909839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_837909839.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_198925971.pdb -s /var/tmp/to_scwrl_198925971.seq -o /var/tmp/from_scwrl_198925971.pdb > /var/tmp/scwrl_198925971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198925971.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1108127008.pdb -s /var/tmp/to_scwrl_1108127008.seq -o /var/tmp/from_scwrl_1108127008.pdb > /var/tmp/scwrl_1108127008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108127008.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1423528102.pdb -s /var/tmp/to_scwrl_1423528102.seq -o /var/tmp/from_scwrl_1423528102.pdb > /var/tmp/scwrl_1423528102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423528102.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_410312902.pdb -s /var/tmp/to_scwrl_410312902.seq -o /var/tmp/from_scwrl_410312902.pdb > /var/tmp/scwrl_410312902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410312902.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2084708695.pdb -s /var/tmp/to_scwrl_2084708695.seq -o /var/tmp/from_scwrl_2084708695.pdb > /var/tmp/scwrl_2084708695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2084708695.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 22, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 23, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 25, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 29, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 31, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 32, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 74, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 78, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 279, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 281, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 283, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 285, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1584613411.pdb -s /var/tmp/to_scwrl_1584613411.seq -o /var/tmp/from_scwrl_1584613411.pdb > /var/tmp/scwrl_1584613411.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1584613411.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1137404025.pdb -s /var/tmp/to_scwrl_1137404025.seq -o /var/tmp/from_scwrl_1137404025.pdb > /var/tmp/scwrl_1137404025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1137404025.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1289799740.pdb -s /var/tmp/to_scwrl_1289799740.seq -o /var/tmp/from_scwrl_1289799740.pdb > /var/tmp/scwrl_1289799740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1289799740.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1647881909.pdb -s /var/tmp/to_scwrl_1647881909.seq -o /var/tmp/from_scwrl_1647881909.pdb > /var/tmp/scwrl_1647881909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647881909.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 Skipped atom 639, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1505600663.pdb -s /var/tmp/to_scwrl_1505600663.seq -o /var/tmp/from_scwrl_1505600663.pdb > /var/tmp/scwrl_1505600663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1505600663.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_302666362.pdb -s /var/tmp/to_scwrl_302666362.seq -o /var/tmp/from_scwrl_302666362.pdb > /var/tmp/scwrl_302666362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_302666362.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1872821404.pdb -s /var/tmp/to_scwrl_1872821404.seq -o /var/tmp/from_scwrl_1872821404.pdb > /var/tmp/scwrl_1872821404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1872821404.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_698529087.pdb -s /var/tmp/to_scwrl_698529087.seq -o /var/tmp/from_scwrl_698529087.pdb > /var/tmp/scwrl_698529087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698529087.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1024870822.pdb -s /var/tmp/to_scwrl_1024870822.seq -o /var/tmp/from_scwrl_1024870822.pdb > /var/tmp/scwrl_1024870822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1024870822.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1170439012.pdb -s /var/tmp/to_scwrl_1170439012.seq -o /var/tmp/from_scwrl_1170439012.pdb > /var/tmp/scwrl_1170439012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1170439012.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_613562017.pdb -s /var/tmp/to_scwrl_613562017.seq -o /var/tmp/from_scwrl_613562017.pdb > /var/tmp/scwrl_613562017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613562017.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_596067103.pdb -s /var/tmp/to_scwrl_596067103.seq -o /var/tmp/from_scwrl_596067103.pdb > /var/tmp/scwrl_596067103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_596067103.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1864981856.pdb -s /var/tmp/to_scwrl_1864981856.seq -o /var/tmp/from_scwrl_1864981856.pdb > /var/tmp/scwrl_1864981856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864981856.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1225646774.pdb -s /var/tmp/to_scwrl_1225646774.seq -o /var/tmp/from_scwrl_1225646774.pdb > /var/tmp/scwrl_1225646774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1225646774.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1616091095.pdb -s /var/tmp/to_scwrl_1616091095.seq -o /var/tmp/from_scwrl_1616091095.pdb > /var/tmp/scwrl_1616091095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1616091095.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1024832352.pdb -s /var/tmp/to_scwrl_1024832352.seq -o /var/tmp/from_scwrl_1024832352.pdb > /var/tmp/scwrl_1024832352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1024832352.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_204790866.pdb -s /var/tmp/to_scwrl_204790866.seq -o /var/tmp/from_scwrl_204790866.pdb > /var/tmp/scwrl_204790866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204790866.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1077336165.pdb -s /var/tmp/to_scwrl_1077336165.seq -o /var/tmp/from_scwrl_1077336165.pdb > /var/tmp/scwrl_1077336165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077336165.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_633925649.pdb -s /var/tmp/to_scwrl_633925649.seq -o /var/tmp/from_scwrl_633925649.pdb > /var/tmp/scwrl_633925649.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_633925649.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2065830389.pdb -s /var/tmp/to_scwrl_2065830389.seq -o /var/tmp/from_scwrl_2065830389.pdb > /var/tmp/scwrl_2065830389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2065830389.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1304942070.pdb -s /var/tmp/to_scwrl_1304942070.seq -o /var/tmp/from_scwrl_1304942070.pdb > /var/tmp/scwrl_1304942070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1304942070.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_929654816.pdb -s /var/tmp/to_scwrl_929654816.seq -o /var/tmp/from_scwrl_929654816.pdb > /var/tmp/scwrl_929654816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929654816.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1493306721.pdb -s /var/tmp/to_scwrl_1493306721.seq -o /var/tmp/from_scwrl_1493306721.pdb > /var/tmp/scwrl_1493306721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493306721.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_2012200097.pdb -s /var/tmp/to_scwrl_2012200097.seq -o /var/tmp/from_scwrl_2012200097.pdb > /var/tmp/scwrl_2012200097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012200097.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_165297237.pdb -s /var/tmp/to_scwrl_165297237.seq -o /var/tmp/from_scwrl_165297237.pdb > /var/tmp/scwrl_165297237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_165297237.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_183732913.pdb -s /var/tmp/to_scwrl_183732913.seq -o /var/tmp/from_scwrl_183732913.pdb > /var/tmp/scwrl_183732913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_183732913.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_63642421.pdb -s /var/tmp/to_scwrl_63642421.seq -o /var/tmp/from_scwrl_63642421.pdb > /var/tmp/scwrl_63642421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63642421.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0308 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1273424245.pdb -s /var/tmp/to_scwrl_1273424245.seq -o /var/tmp/from_scwrl_1273424245.pdb > /var/tmp/scwrl_1273424245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273424245.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_1607261015.pdb -s /var/tmp/to_scwrl_1607261015.seq -o /var/tmp/from_scwrl_1607261015.pdb > /var/tmp/scwrl_1607261015.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1607261015.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 149 ; scwrl3 -i /var/tmp/to_scwrl_473955324.pdb -s /var/tmp/to_scwrl_473955324.seq -o /var/tmp/from_scwrl_473955324.pdb > /var/tmp/scwrl_473955324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473955324.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 48.9166 sec, elapsed time= 416.494 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -122.514 shub_TS1 costs 0 real_cost = -111.096 panther2_TS1-scwrl costs 0 real_cost = -113.518 panther2_TS1 costs 0 real_cost = -105.008 nFOLD_TS5-scwrl costs 0 real_cost = 12.5167 nFOLD_TS5 costs 0 real_cost = 89.8704 nFOLD_TS4-scwrl costs 0 real_cost = 10.5241 nFOLD_TS4 costs 0 real_cost = 101.599 nFOLD_TS3-scwrl costs 0 real_cost = 19.6273 nFOLD_TS3 costs 0 real_cost = 109.292 nFOLD_TS2-scwrl costs 0 real_cost = -7.0594 nFOLD_TS2 costs 0 real_cost = 87.6424 nFOLD_TS1-scwrl costs 0 real_cost = -59.4866 nFOLD_TS1 costs 0 real_cost = 29.1155 mGen-3D_TS1-scwrl costs 0 real_cost = -27.4084 mGen-3D_TS1 costs 0 real_cost = 66.211 karypis.srv_TS5-scwrl costs 0 real_cost = -156.87 karypis.srv_TS5 costs 0 real_cost = -156.87 karypis.srv_TS4-scwrl costs 0 real_cost = -150.032 karypis.srv_TS4 costs 0 real_cost = -150.767 karypis.srv_TS3-scwrl costs 0 real_cost = -139.315 karypis.srv_TS3 costs 0 real_cost = -139.315 karypis.srv_TS2-scwrl costs 0 real_cost = -141.703 karypis.srv_TS2 costs 0 real_cost = -141.703 karypis.srv_TS1-scwrl costs 0 real_cost = -152.737 karypis.srv_TS1 costs 0 real_cost = -152.975 karypis.srv.4_TS5-scwrl costs 0 real_cost = 330.516 karypis.srv.4_TS5 costs 0 real_cost = 330.364 karypis.srv.4_TS3-scwrl costs 0 real_cost = 263.052 karypis.srv.4_TS3 costs 0 real_cost = 261.176 karypis.srv.4_TS2-scwrl costs 0 real_cost = 296.12 karypis.srv.4_TS2 costs 0 real_cost = 296.12 karypis.srv.4_TS1-scwrl costs 0 real_cost = 248.465 karypis.srv.4_TS1 costs 0 real_cost = 248.465 karypis.srv.2_TS5-scwrl costs 0 real_cost = -285.513 karypis.srv.2_TS5 costs 0 real_cost = -285.513 karypis.srv.2_TS4-scwrl costs 0 real_cost = -279.768 karypis.srv.2_TS4 costs 0 real_cost = -279.768 karypis.srv.2_TS3-scwrl costs 0 real_cost = -273.126 karypis.srv.2_TS3 costs 0 real_cost = -273.126 karypis.srv.2_TS2-scwrl costs 0 real_cost = -267.818 karypis.srv.2_TS2 costs 0 real_cost = -267.818 karypis.srv.2_TS1-scwrl costs 0 real_cost = -272.561 karypis.srv.2_TS1 costs 0 real_cost = -272.561 gtg_AL5-scwrl costs 0 real_cost = 26.3532 gtg_AL5 costs 0 real_cost = 122.499 gtg_AL4-scwrl costs 0 real_cost = 2.44272 gtg_AL4 costs 0 real_cost = 125.664 gtg_AL3-scwrl costs 0 real_cost = -30.9953 gtg_AL3 costs 0 real_cost = 81.0109 gtg_AL2-scwrl costs 0 real_cost = -21.8218 gtg_AL2 costs 0 real_cost = 90.2697 gtg_AL1-scwrl costs 0 real_cost = -24.3355 gtg_AL1 costs 0 real_cost = 94.3092 forecast-s_AL5-scwrl costs 0 real_cost = 30.1962 forecast-s_AL5 costs 0 real_cost = 127.409 forecast-s_AL4-scwrl costs 0 real_cost = -26.8079 forecast-s_AL4 costs 0 real_cost = 94.4456 forecast-s_AL3-scwrl costs 0 real_cost = -68.6299 forecast-s_AL3 costs 0 real_cost = 52.7021 forecast-s_AL2-scwrl costs 0 real_cost = -11.5617 forecast-s_AL2 costs 0 real_cost = 94.4195 forecast-s_AL1-scwrl costs 0 real_cost = -45.241 forecast-s_AL1 costs 0 real_cost = 76.7605 beautshotbase_TS1-scwrl costs 0 real_cost = -145.307 beautshotbase_TS1 costs 0 real_cost = -134.485 beautshot_TS1-scwrl costs 0 real_cost = -150.544 beautshot_TS1 costs 0 real_cost = -138.433 Zhang-Server_TS5-scwrl costs 0 real_cost = -27.6653 Zhang-Server_TS5 costs 0 real_cost = -17.8189 Zhang-Server_TS4-scwrl costs 0 real_cost = -137.884 Zhang-Server_TS4 costs 0 real_cost = -133.093 Zhang-Server_TS3-scwrl costs 0 real_cost = -235.727 Zhang-Server_TS3 costs 0 real_cost = -240.854 Zhang-Server_TS2-scwrl costs 0 real_cost = -237.943 Zhang-Server_TS2 costs 0 real_cost = -231.499 Zhang-Server_TS1-scwrl costs 0 real_cost = -243.343 Zhang-Server_TS1 costs 0 real_cost = -231.01 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -123.636 UNI-EID_sfst_AL5 costs 0 real_cost = -0.375035 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -222.539 UNI-EID_sfst_AL4 costs 0 real_cost = -102.648 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -133.585 UNI-EID_sfst_AL3 costs 0 real_cost = -3.38664 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -225.516 UNI-EID_sfst_AL2 costs 0 real_cost = -112.616 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -280.319 UNI-EID_sfst_AL1 costs 0 real_cost = -165.11 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -151.651 UNI-EID_expm_TS1 costs 0 real_cost = -151.632 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -123.636 UNI-EID_bnmx_TS5 costs 0 real_cost = -0.375035 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -222.539 UNI-EID_bnmx_TS4 costs 0 real_cost = -102.648 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -133.585 UNI-EID_bnmx_TS3 costs 0 real_cost = -3.38664 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -225.516 UNI-EID_bnmx_TS2 costs 0 real_cost = -112.616 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -280.319 UNI-EID_bnmx_TS1 costs 0 real_cost = -165.11 SPARKS2_TS5-scwrl costs 0 real_cost = -122.345 SPARKS2_TS5 costs 0 real_cost = -110.368 SPARKS2_TS4-scwrl costs 0 real_cost = -131.844 SPARKS2_TS4 costs 0 real_cost = -124.959 SPARKS2_TS3-scwrl costs 0 real_cost = -140.531 SPARKS2_TS3 costs 0 real_cost = -127.904 SPARKS2_TS2-scwrl costs 0 real_cost = -143.997 SPARKS2_TS2 costs 0 real_cost = -141.739 SPARKS2_TS1-scwrl costs 0 real_cost = -229.066 SPARKS2_TS1 costs 0 real_cost = -219.699 SP4_TS5-scwrl costs 0 real_cost = -99.1329 SP4_TS5 costs 0 real_cost = -91.7187 SP4_TS4-scwrl costs 0 real_cost = -126.213 SP4_TS4 costs 0 real_cost = -116.45 SP4_TS3-scwrl costs 0 real_cost = -134.03 SP4_TS3 costs 0 real_cost = -123.124 SP4_TS2-scwrl costs 0 real_cost = -143.997 SP4_TS2 costs 0 real_cost = -141.739 SP4_TS1-scwrl costs 0 real_cost = -229.066 SP4_TS1 costs 0 real_cost = -219.699 SP3_TS5-scwrl costs 0 real_cost = -122.02 SP3_TS5 costs 0 real_cost = -122.992 SP3_TS4-scwrl costs 0 real_cost = -125.565 SP3_TS4 costs 0 real_cost = -115.657 SP3_TS3-scwrl costs 0 real_cost = -140.531 SP3_TS3 costs 0 real_cost = -127.904 SP3_TS2-scwrl costs 0 real_cost = -143.997 SP3_TS2 costs 0 real_cost = -141.739 SP3_TS1-scwrl costs 0 real_cost = -229.066 SP3_TS1 costs 0 real_cost = -219.699 SAM_T06_server_TS5-scwrl costs 0 real_cost = -95.5495 SAM_T06_server_TS5 costs 0 real_cost = -96.6031 SAM_T06_server_TS4-scwrl costs 0 real_cost = 23.9398 SAM_T06_server_TS4 costs 0 real_cost = 3.50435 SAM_T06_server_TS3-scwrl costs 0 real_cost = 50.6736 SAM_T06_server_TS3 costs 0 real_cost = -16.8908 SAM_T06_server_TS2-scwrl costs 0 real_cost = -174.693 SAM_T06_server_TS2 costs 0 real_cost = -210.972 SAM_T06_server_TS1-scwrl costs 0 real_cost = -268.116 SAM_T06_server_TS1 costs 0 real_cost = -267.964 SAM-T99_AL5-scwrl costs 0 real_cost = -141.866 SAM-T99_AL5 costs 0 real_cost = -17.3257 SAM-T99_AL4-scwrl costs 0 real_cost = -144.179 SAM-T99_AL4 costs 0 real_cost = -15.7315 SAM-T99_AL3-scwrl costs 0 real_cost = -115.923 SAM-T99_AL3 costs 0 real_cost = 9.22239 SAM-T99_AL2-scwrl costs 0 real_cost = -47.1065 SAM-T99_AL2 costs 0 real_cost = 69.5228 SAM-T99_AL1-scwrl costs 0 real_cost = 18.5889 SAM-T99_AL1 costs 0 real_cost = 112.149 SAM-T02_AL5-scwrl costs 0 real_cost = -272.627 SAM-T02_AL5 costs 0 real_cost = -151.101 SAM-T02_AL4-scwrl costs 0 real_cost = -130.869 SAM-T02_AL4 costs 0 real_cost = -1.20003 SAM-T02_AL3-scwrl costs 0 real_cost = -86.4992 SAM-T02_AL3 costs 0 real_cost = 23.8542 SAM-T02_AL2-scwrl costs 0 real_cost = -148.027 SAM-T02_AL2 costs 0 real_cost = -16.4865 SAM-T02_AL1-scwrl costs 0 real_cost = -281.621 SAM-T02_AL1 costs 0 real_cost = -165.567 ROKKY_TS5-scwrl costs 0 real_cost = -130.329 ROKKY_TS5 costs 0 real_cost = -120.188 ROKKY_TS4-scwrl costs 0 real_cost = -284.64 ROKKY_TS4 costs 0 real_cost = -273.667 ROKKY_TS3-scwrl costs 0 real_cost = -27.8715 ROKKY_TS3 costs 0 real_cost = -12.8092 ROKKY_TS2-scwrl costs 0 real_cost = -162.509 ROKKY_TS2 costs 0 real_cost = -162.649 ROKKY_TS1-scwrl costs 0 real_cost = -132.944 ROKKY_TS1 costs 0 real_cost = -122.066 ROBETTA_TS5-scwrl costs 0 real_cost = -136.263 ROBETTA_TS5 costs 0 real_cost = -129.337 ROBETTA_TS4-scwrl costs 0 real_cost = -139.033 ROBETTA_TS4 costs 0 real_cost = -131.453 ROBETTA_TS3-scwrl costs 0 real_cost = -129.821 ROBETTA_TS3 costs 0 real_cost = -125.165 ROBETTA_TS2-scwrl costs 0 real_cost = -139.307 ROBETTA_TS2 costs 0 real_cost = -133.467 ROBETTA_TS1-scwrl costs 0 real_cost = -144.824 ROBETTA_TS1 costs 0 real_cost = -142.132 RAPTOR_TS5-scwrl costs 0 real_cost = -132.685 RAPTOR_TS5 costs 0 real_cost = -123.566 RAPTOR_TS4-scwrl costs 0 real_cost = -126.876 RAPTOR_TS4 costs 0 real_cost = -121.775 RAPTOR_TS3-scwrl costs 0 real_cost = -157.48 RAPTOR_TS3 costs 0 real_cost = -150.847 RAPTOR_TS2-scwrl costs 0 real_cost = -133.361 RAPTOR_TS2 costs 0 real_cost = -129.183 RAPTOR_TS1-scwrl costs 0 real_cost = -146.522 RAPTOR_TS1 costs 0 real_cost = -142.867 RAPTORESS_TS5-scwrl costs 0 real_cost = -117.799 RAPTORESS_TS5 costs 0 real_cost = -114.963 RAPTORESS_TS4-scwrl costs 0 real_cost = -118.828 RAPTORESS_TS4 costs 0 real_cost = -108.735 RAPTORESS_TS3-scwrl costs 0 real_cost = -139.929 RAPTORESS_TS3 costs 0 real_cost = -132.523 RAPTORESS_TS2-scwrl costs 0 real_cost = -116.09 RAPTORESS_TS2 costs 0 real_cost = -109.743 RAPTORESS_TS1-scwrl costs 0 real_cost = -142.291 RAPTORESS_TS1 costs 0 real_cost = -134.989 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -271.131 RAPTOR-ACE_TS5 costs 0 real_cost = -262.796 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -147.7 RAPTOR-ACE_TS4 costs 0 real_cost = -140.655 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -135.171 RAPTOR-ACE_TS3 costs 0 real_cost = -122.319 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -143.997 RAPTOR-ACE_TS2 costs 0 real_cost = -141.739 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -148.741 RAPTOR-ACE_TS1 costs 0 real_cost = -143.334 Pmodeller6_TS5-scwrl costs 0 real_cost = -208.088 Pmodeller6_TS5 costs 0 real_cost = -207.933 Pmodeller6_TS4-scwrl costs 0 real_cost = -106.581 Pmodeller6_TS4 costs 0 real_cost = -92.6895 Pmodeller6_TS3-scwrl costs 0 real_cost = -106.581 Pmodeller6_TS3 costs 0 real_cost = -92.6895 Pmodeller6_TS2-scwrl costs 0 real_cost = -212.198 Pmodeller6_TS2 costs 0 real_cost = -207.432 Pmodeller6_TS1-scwrl costs 0 real_cost = -104.259 Pmodeller6_TS1 costs 0 real_cost = -93.0667 Phyre-2_TS5-scwrl costs 0 real_cost = -142.515 Phyre-2_TS5 costs 0 real_cost = -142.511 Phyre-2_TS4-scwrl costs 0 real_cost = -142.515 Phyre-2_TS4 costs 0 real_cost = -142.511 Phyre-2_TS3-scwrl costs 0 real_cost = -142.515 Phyre-2_TS3 costs 0 real_cost = -142.511 Phyre-2_TS2-scwrl costs 0 real_cost = -142.515 Phyre-2_TS2 costs 0 real_cost = -142.511 Phyre-2_TS1-scwrl costs 0 real_cost = -135.724 Phyre-2_TS1 costs 0 real_cost = -133.543 Phyre-1_TS1-scwrl costs 0 real_cost = -147.951 Phyre-1_TS1 costs 0 real_cost = -148.206 Pcons6_TS5-scwrl costs 0 real_cost = -184.431 Pcons6_TS5 costs 0 real_cost = -184.877 Pcons6_TS4-scwrl costs 0 real_cost = -213.238 Pcons6_TS4 costs 0 real_cost = -206.409 Pcons6_TS3-scwrl costs 0 real_cost = -183.323 Pcons6_TS3 costs 0 real_cost = -183.403 Pcons6_TS2-scwrl costs 0 real_cost = -208.088 Pcons6_TS2 costs 0 real_cost = -207.933 Pcons6_TS1-scwrl costs 0 real_cost = -212.198 Pcons6_TS1 costs 0 real_cost = -207.432 PROTINFO_TS5-scwrl costs 0 real_cost = -276.877 PROTINFO_TS5 costs 0 real_cost = -280.095 PROTINFO_TS4-scwrl costs 0 real_cost = -270.463 PROTINFO_TS4 costs 0 real_cost = -278.958 PROTINFO_TS3-scwrl costs 0 real_cost = -250.99 PROTINFO_TS3 costs 0 real_cost = -257.74 PROTINFO_TS2-scwrl costs 0 real_cost = -269.98 PROTINFO_TS2 costs 0 real_cost = -264.059 PROTINFO_TS1-scwrl costs 0 real_cost = -281.211 PROTINFO_TS1 costs 0 real_cost = -272.192 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -260.307 PROTINFO-AB_TS5 costs 0 real_cost = -260.171 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -265.193 PROTINFO-AB_TS4 costs 0 real_cost = -262.973 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -266.775 PROTINFO-AB_TS3 costs 0 real_cost = -266.644 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -263.593 PROTINFO-AB_TS2 costs 0 real_cost = -263.482 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -269.98 PROTINFO-AB_TS1 costs 0 real_cost = -264.059 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -229.066 NN_PUT_lab_TS1 costs 0 real_cost = -219.699 MetaTasser_TS1-scwrl costs 0 real_cost = -140.729 MetaTasser_TS1 costs 0 real_cost = -130.779 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -75.6895 Ma-OPUS-server_TS5 costs 0 real_cost = -67.3719 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -171.505 Ma-OPUS-server_TS4 costs 0 real_cost = -163.853 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -121.262 Ma-OPUS-server_TS3 costs 0 real_cost = -102.12 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -148.806 Ma-OPUS-server_TS2 costs 0 real_cost = -143.461 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -227.442 Ma-OPUS-server_TS1 costs 0 real_cost = -219.881 LOOPP_TS5-scwrl costs 0 real_cost = -104.091 LOOPP_TS5 costs 0 real_cost = -98.9559 LOOPP_TS4-scwrl costs 0 real_cost = -238.543 LOOPP_TS4 costs 0 real_cost = -229.356 LOOPP_TS3-scwrl costs 0 real_cost = -96.4862 LOOPP_TS3 costs 0 real_cost = -88.6017 LOOPP_TS2-scwrl costs 0 real_cost = -250.882 LOOPP_TS2 costs 0 real_cost = -241.288 LOOPP_TS1-scwrl costs 0 real_cost = -72.2348 LOOPP_TS1 costs 0 real_cost = -64.2116 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -137.854 Huber-Torda-Server_TS5 costs 0 real_cost = -39.8738 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -115.42 Huber-Torda-Server_TS4 costs 0 real_cost = -31.1756 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -246.07 Huber-Torda-Server_TS3 costs 0 real_cost = -153.034 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -105.263 Huber-Torda-Server_TS2 costs 0 real_cost = -11.4491 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -127.719 Huber-Torda-Server_TS1 costs 0 real_cost = -28.4919 HHpred3_TS1-scwrl costs 0 real_cost = -268.521 HHpred3_TS1 costs 0 real_cost = -267.089 HHpred2_TS1-scwrl costs 0 real_cost = -263.771 HHpred2_TS1 costs 0 real_cost = -254.961 HHpred1_TS1-scwrl costs 0 real_cost = -132.819 HHpred1_TS1 costs 0 real_cost = -126.592 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -139.972 GeneSilicoMetaServer_TS5 costs 0 real_cost = -134.805 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -293.453 GeneSilicoMetaServer_TS4 costs 0 real_cost = -285.642 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -250.948 GeneSilicoMetaServer_TS3 costs 0 real_cost = -242.39 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -247.284 GeneSilicoMetaServer_TS2 costs 0 real_cost = -238.105 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -275.916 GeneSilicoMetaServer_TS1 costs 0 real_cost = -273.42 FUNCTION_TS5-scwrl costs 0 real_cost = -130.376 FUNCTION_TS5 costs 0 real_cost = -128.639 FUNCTION_TS4-scwrl costs 0 real_cost = -128.212 FUNCTION_TS4 costs 0 real_cost = -120.183 FUNCTION_TS3-scwrl costs 0 real_cost = -128.776 FUNCTION_TS3 costs 0 real_cost = -119.287 FUNCTION_TS2-scwrl costs 0 real_cost = -128.182 FUNCTION_TS2 costs 0 real_cost = -118.354 FUNCTION_TS1-scwrl costs 0 real_cost = -117.98 FUNCTION_TS1 costs 0 real_cost = -114.502 FUGUE_AL5-scwrl costs 0 real_cost = 210.782 FUGUE_AL5 costs 0 real_cost = 300.659 FUGUE_AL4-scwrl costs 0 real_cost = 101.818 FUGUE_AL4 costs 0 real_cost = 200.261 FUGUE_AL3-scwrl costs 0 real_cost = 42.4221 FUGUE_AL3 costs 0 real_cost = 153.883 FUGUE_AL2-scwrl costs 0 real_cost = 54.1659 FUGUE_AL2 costs 0 real_cost = 184.459 FUGUE_AL1-scwrl costs 0 real_cost = -223.69 FUGUE_AL1 costs 0 real_cost = -112.456 FUGMOD_TS5-scwrl costs 0 real_cost = 139.632 FUGMOD_TS5 costs 0 real_cost = 138.241 FUGMOD_TS4-scwrl costs 0 real_cost = -17.3526 FUGMOD_TS4 costs 0 real_cost = -10.3163 FUGMOD_TS3-scwrl costs 0 real_cost = 28.9266 FUGMOD_TS3 costs 0 real_cost = 30.7658 FUGMOD_TS2-scwrl costs 0 real_cost = 45.9265 FUGMOD_TS2 costs 0 real_cost = 46.4404 FUGMOD_TS1-scwrl costs 0 real_cost = -221.113 FUGMOD_TS1 costs 0 real_cost = -221.162 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 327.392 FPSOLVER-SERVER_TS5 costs 0 real_cost = 330.231 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 345.015 FPSOLVER-SERVER_TS4 costs 0 real_cost = 347.683 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 347.315 FPSOLVER-SERVER_TS3 costs 0 real_cost = 348.854 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 357.239 FPSOLVER-SERVER_TS2 costs 0 real_cost = 358.46 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 302.718 FPSOLVER-SERVER_TS1 costs 0 real_cost = 307.924 FORTE2_AL5-scwrl costs 0 real_cost = 97.3639 FORTE2_AL5 costs 0 real_cost = 225.22 FORTE2_AL4-scwrl costs 0 real_cost = 255.454 FORTE2_AL4 costs 0 real_cost = 379.399 FORTE2_AL3-scwrl costs 0 real_cost = -16.3941 FORTE2_AL3 costs 0 real_cost = 88.8422 FORTE2_AL2-scwrl costs 0 real_cost = -132.628 FORTE2_AL2 costs 0 real_cost = -9.7746 FORTE2_AL1-scwrl costs 0 real_cost = -10.2705 FORTE2_AL1 costs 0 real_cost = 109.712 FORTE1_AL5-scwrl costs 0 real_cost = -35.7982 FORTE1_AL5 costs 0 real_cost = 70.2811 FORTE1_AL4-scwrl costs 0 real_cost = -4.39824 FORTE1_AL4 costs 0 real_cost = 119.804 FORTE1_AL3-scwrl costs 0 real_cost = -1.65406 FORTE1_AL3 costs 0 real_cost = 121.214 FORTE1_AL2-scwrl costs 0 real_cost = -12.7466 FORTE1_AL2 costs 0 real_cost = 105.361 FORTE1_AL1-scwrl costs 0 real_cost = -135.689 FORTE1_AL1 costs 0 real_cost = -13.0723 FOLDpro_TS5-scwrl costs 0 real_cost = 73.86 FOLDpro_TS5 costs 0 real_cost = 81.7854 FOLDpro_TS4-scwrl costs 0 real_cost = 192.225 FOLDpro_TS4 costs 0 real_cost = 197.234 FOLDpro_TS3-scwrl costs 0 real_cost = 80.9169 FOLDpro_TS3 costs 0 real_cost = 87.2781 FOLDpro_TS2-scwrl costs 0 real_cost = -99.8917 FOLDpro_TS2 costs 0 real_cost = -91.9871 FOLDpro_TS1-scwrl costs 0 real_cost = -298.467 FOLDpro_TS1 costs 0 real_cost = -292.616 FAMS_TS5-scwrl costs 0 real_cost = -126.314 FAMS_TS5 costs 0 real_cost = -124.617 FAMS_TS4-scwrl costs 0 real_cost = -128.212 FAMS_TS4 costs 0 real_cost = -120.183 FAMS_TS3-scwrl costs 0 real_cost = -129.244 FAMS_TS3 costs 0 real_cost = -127.467 FAMS_TS2-scwrl costs 0 real_cost = -130.376 FAMS_TS2 costs 0 real_cost = -128.639 FAMS_TS1-scwrl costs 0 real_cost = -138.582 FAMS_TS1 costs 0 real_cost = -133.482 FAMSD_TS5-scwrl costs 0 real_cost = -127.847 FAMSD_TS5 costs 0 real_cost = -125.695 FAMSD_TS4-scwrl costs 0 real_cost = -121.984 FAMSD_TS4 costs 0 real_cost = -112.083 FAMSD_TS3-scwrl costs 0 real_cost = -128.823 FAMSD_TS3 costs 0 real_cost = -120.318 FAMSD_TS2-scwrl costs 0 real_cost = -126.314 FAMSD_TS2 costs 0 real_cost = -124.617 FAMSD_TS1-scwrl costs 0 real_cost = -132.794 FAMSD_TS1 costs 0 real_cost = -128.834 Distill_TS5-scwrl costs 0 real_cost = 220.426 Distill_TS4-scwrl costs 0 real_cost = 210.417 Distill_TS3-scwrl costs 0 real_cost = 220.536 Distill_TS2-scwrl costs 0 real_cost = 213.825 Distill_TS1-scwrl costs 0 real_cost = 216.399 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -137.404 CaspIta-FOX_TS5 costs 0 real_cost = -138.748 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -142.015 CaspIta-FOX_TS4 costs 0 real_cost = -138.329 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -258.479 CaspIta-FOX_TS3 costs 0 real_cost = -256.954 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -136.131 CaspIta-FOX_TS2 costs 0 real_cost = -137.796 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -140.943 CaspIta-FOX_TS1 costs 0 real_cost = -135.354 CPHmodels_TS1-scwrl costs 0 real_cost = -124.37 CPHmodels_TS1 costs 0 real_cost = -121.559 CIRCLE_TS5-scwrl costs 0 real_cost = -129.244 CIRCLE_TS5 costs 0 real_cost = -127.467 CIRCLE_TS4-scwrl costs 0 real_cost = -128.823 CIRCLE_TS4 costs 0 real_cost = -120.318 CIRCLE_TS3-scwrl costs 0 real_cost = -125.812 CIRCLE_TS3 costs 0 real_cost = -120.305 CIRCLE_TS2-scwrl costs 0 real_cost = -130.376 CIRCLE_TS2 costs 0 real_cost = -128.639 CIRCLE_TS1-scwrl costs 0 real_cost = -127.135 CIRCLE_TS1 costs 0 real_cost = -117.062 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -92.8573 Bilab-ENABLE_TS5 costs 0 real_cost = -92.8828 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -76.9512 Bilab-ENABLE_TS4 costs 0 real_cost = -76.9699 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 21.6486 Bilab-ENABLE_TS3 costs 0 real_cost = 21.6561 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -56.5939 Bilab-ENABLE_TS2 costs 0 real_cost = -56.5939 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -229.292 Bilab-ENABLE_TS1 costs 0 real_cost = -229.292 BayesHH_TS1-scwrl costs 0 real_cost = -270.685 BayesHH_TS1 costs 0 real_cost = -270.215 ABIpro_TS5-scwrl costs 0 real_cost = 255.79 ABIpro_TS5 costs 0 real_cost = 255.707 ABIpro_TS4-scwrl costs 0 real_cost = 222.735 ABIpro_TS4 costs 0 real_cost = 222.735 ABIpro_TS3-scwrl costs 0 real_cost = 182.087 ABIpro_TS3 costs 0 real_cost = 182.087 ABIpro_TS2-scwrl costs 0 real_cost = 224.869 ABIpro_TS2 costs 0 real_cost = 224.875 ABIpro_TS1-scwrl costs 0 real_cost = 230.618 ABIpro_TS1 costs 0 real_cost = 232.442 3Dpro_TS5-scwrl costs 0 real_cost = -4.82592 3Dpro_TS5 costs 0 real_cost = -12.9905 3Dpro_TS4-scwrl costs 0 real_cost = 218.911 3Dpro_TS4 costs 0 real_cost = 223.265 3Dpro_TS3-scwrl costs 0 real_cost = 155.335 3Dpro_TS3 costs 0 real_cost = 167.953 3Dpro_TS2-scwrl costs 0 real_cost = 12.2246 3Dpro_TS2 costs 0 real_cost = 23.9486 3Dpro_TS1-scwrl costs 0 real_cost = -177.94 3Dpro_TS1 costs 0 real_cost = -171.042 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -96.3235 3D-JIGSAW_TS5 costs 0 real_cost = -81.8283 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -127.275 3D-JIGSAW_TS4 costs 0 real_cost = -113.544 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -146.201 3D-JIGSAW_TS3 costs 0 real_cost = -137.957 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -134.858 3D-JIGSAW_TS2 costs 0 real_cost = -132.693 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -126.714 3D-JIGSAW_TS1 costs 0 real_cost = -113.587 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -124.893 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -113.346 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -140.475 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -135.826 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -118.076 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -118.968 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -136.425 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -133.489 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -128.199 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -126.3 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -116.336 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -116.336 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -116.076 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -116.076 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -104.07 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -104.338 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -100.665 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -101.787 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -102.489 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -104.006 dimer//dimer-try1-1o3yA.repack-nonPC costs 0 real_cost = -262.671 dimer//dimer-try1-1o3yA costs 0 real_cost = -262.937 dimer//dimer-from-try5-opt2-1o3yA.repack-nonPC costs 0 real_cost = -265.113 dimer//dimer-from-try5-opt2-1o3yA costs 0 real_cost = -262.517 dimer//dimer-from-try4-opt2-1o3yA.repack-nonPC costs 0 real_cost = -285.046 dimer//dimer-from-try4-opt2-1o3yA costs 0 real_cost = -282.601 dimer//dimer-from-try3-opt2-1o3yA.repack-nonPC costs 0 real_cost = -262.723 dimer//dimer-from-try3-opt2-1o3yA costs 0 real_cost = -258.142 dimer//dimer-from-try1-opt1-1o3yA.repack-nonPC costs 0 real_cost = -262.773 dimer//dimer-from-try1-opt1-1o3yA costs 0 real_cost = -265.3 dimer//try9-opt2.gromacs0 costs 0 real_cost = -263.378 dimer//try10-opt2 costs 0 real_cost = -263.596 dimer//try10-opt2.gromacs0 costs 0 real_cost = -246.764 dimer//try10-opt1 costs 0 real_cost = -264.204 dimer//try10-opt1-scwrl costs 0 real_cost = -266.947 dimer//dimer-try9-opt2 costs 0 real_cost = -284.335 dimer//dimer-try9-opt1 costs 0 real_cost = -284.832 dimer//dimer-try9-opt1-scwrl costs 0 real_cost = -280.59 dimer//dimer-try8-opt2.repack-nonPC costs 0 real_cost = -265.812 dimer//dimer-try8-opt2 costs 0 real_cost = -260.329 dimer//dimer-try8-opt1 costs 0 real_cost = -260.415 dimer//dimer-try8-opt1-scwrl costs 0 real_cost = -267.627 dimer//dimer-try7-opt2.repack-nonPC costs 0 real_cost = -261.62 dimer//dimer-try7-opt2 costs 0 real_cost = -263.109 dimer//dimer-try7-opt1 costs 0 real_cost = -263.03 dimer//dimer-try7-opt1-scwrl costs 0 real_cost = -264.858 dimer//dimer-try6-opt2.repack-nonPC costs 0 real_cost = -260.915 dimer//dimer-try6-opt2 costs 0 real_cost = -268.476 dimer//dimer-try6-opt1 costs 0 real_cost = -263.665 dimer//dimer-try6-opt1-scwrl costs 0 real_cost = -266.128 dimer//dimer-try5-opt2.repack-nonPC costs 0 real_cost = -263.895 dimer//dimer-try5-opt2 costs 0 real_cost = -259.412 dimer//dimer-try5-opt1 costs 0 real_cost = -258.194 dimer//dimer-try5-opt1-scwrl costs 0 real_cost = -265.564 dimer//dimer-try4-opt2.repack-nonPC costs 0 real_cost = -282.29 dimer//dimer-try4-opt2 costs 0 real_cost = -283.28 dimer//dimer-try4-opt1 costs 0 real_cost = -283.319 dimer//dimer-try4-opt1-scwrl costs 0 real_cost = -278.91 dimer//dimer-try2-opt2.repack-nonPC costs 0 real_cost = -266.016 dimer//dimer-try2-opt2 costs 0 real_cost = -263.125 dimer//dimer-try2-opt1 costs 0 real_cost = -261.747 dimer//dimer-try2-opt1-scwrl costs 0 real_cost = -268.092 dimer//dimer-try1-opt1 costs 0 real_cost = -212.738 dimer//dimer-try1-opt1-scwrl costs 0 real_cost = -210.613 dimer//dimer-t5o2-try1-opt2.repack-nonPC costs 0 real_cost = -263.732 dimer//dimer-t5o2-try1-opt2 costs 0 real_cost = -260.111 dimer//dimer-t5o2-try1-opt1 costs 0 real_cost = -262.575 dimer//dimer-t5o2-try1-opt1-scwrl costs 0 real_cost = -266.585 3mer//try2-opt2.unpack costs 0 real_cost = -262.429 3mer//try2-opt2.reversed costs 0 real_cost = -262.429 3mer//try2-opt2.repack-nonPC costs 0 real_cost = -266.158 3mer//try2-opt2 costs 0 real_cost = -262.429 3mer//try2-opt2.gromacs0 costs 0 real_cost = -234.874 3mer//try2-opt2.CAB costs 0 real_cost = -262.429 3mer//try2-opt2.BAC costs 0 real_cost = -262.429 3mer//try2-opt1 costs 0 real_cost = -261.875 3mer//try2-opt1-scwrl costs 0 real_cost = -268.041 3mer//try1-opt2.unpack costs 0 real_cost = -262.418 3mer//try1-opt2.repack-nonPC costs 0 real_cost = -266.789 3mer//try1-opt2 costs 0 real_cost = -262.418 3mer//try1-opt2.gromacs0 costs 0 real_cost = -235.75 3mer//try1-opt1 costs 0 real_cost = -262.496 3mer//try1-opt1-scwrl costs 0 real_cost = -268.424 3mer//3mer-try1-model costs 0 real_cost = -262.475 tr308.pdb.gz costs 0 real_cost = -290.421 tr308-scwrl.pdb.gz costs 0 real_cost = -304.214 chimera-9-4.pdb.gz costs 0 real_cost = -289.952 T0308.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -305.185 T0308.try9-opt2.pdb.gz costs 0 real_cost = -308.431 T0308.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -308.637 T0308.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = -310.743 T0308.try9-opt1.pdb.gz costs 0 real_cost = -306.229 T0308.try9-opt1-scwrl.pdb.gz costs 0 real_cost = -302.701 T0308.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -302.536 T0308.try8-opt2.pdb.gz costs 0 real_cost = -305.401 T0308.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -299.435 T0308.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = -303.17 T0308.try8-opt1.pdb.gz costs 0 real_cost = -305.265 T0308.try8-opt1-scwrl.pdb.gz costs 0 real_cost = -310.596 T0308.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -308.525 T0308.try7-opt2.pdb.gz costs 0 real_cost = -307.48 T0308.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -311.953 T0308.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = -310.416 T0308.try7-opt1.pdb.gz costs 0 real_cost = -307.837 T0308.try7-opt1-scwrl.pdb.gz costs 0 real_cost = -305.378 T0308.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -305.812 T0308.try6-opt2.pdb.gz costs 0 real_cost = -308.203 T0308.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -306.217 T0308.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = -307.9 T0308.try6-opt1.pdb.gz costs 0 real_cost = -306.95 T0308.try6-opt1-scwrl.pdb.gz costs 0 real_cost = -306.29 T0308.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -265.719 T0308.try5-opt2.pdb.gz costs 0 real_cost = -262.676 T0308.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -263.615 T0308.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -261.15 T0308.try5-opt1.pdb.gz costs 0 real_cost = -262.535 T0308.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -268.904 T0308.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -286.906 T0308.try4-opt2.pdb.gz costs 0 real_cost = -282.776 T0308.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -288.31 T0308.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -280.874 T0308.try4-opt1.pdb.gz costs 0 real_cost = -279.198 T0308.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -280.05 T0308.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -260.282 T0308.try3-opt2.pdb.gz costs 0 real_cost = -258.156 T0308.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -256.591 T0308.try3-opt1.pdb.gz costs 0 real_cost = -260.672 T0308.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -265.542 T0308.try2-chimera-opt2.pdb.gz costs 0 real_cost = -261.276 T0308.try2-chimera-opt1.pdb.gz costs 0 real_cost = -262.149 T0308.try2-chimera-opt1-scwrl.pdb.gz costs 0 real_cost = -266.078 T0308.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -292.745 T0308.try12-opt2.pdb.gz costs 0 real_cost = -298.823 T0308.try12-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -298.591 T0308.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = -296.861 T0308.try12-opt1.pdb.gz costs 0 real_cost = -295.83 T0308.try12-opt1-scwrl.pdb.gz costs 0 real_cost = -295.35 T0308.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -288.308 T0308.try11-opt2.pdb.gz costs 0 real_cost = -290.167 T0308.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -287.048 T0308.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = -289.606 T0308.try11-opt1.pdb.gz costs 0 real_cost = -293.614 T0308.try11-opt1-scwrl.pdb.gz costs 0 real_cost = -294.877 T0308.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -296.178 T0308.try10-opt2.pdb.gz costs 0 real_cost = -295.025 T0308.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -297.98 T0308.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = -292.666 T0308.try10-opt1.pdb.gz costs 0 real_cost = -292.89 T0308.try10-opt1-scwrl.pdb.gz costs 0 real_cost = -294.323 T0308.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -261.973 T0308.try1-opt2.pdb.gz costs 0 real_cost = -262.924 T0308.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -260.292 T0308.try1-opt2-chimera-D120-H142-mod16.pdb.gz costs 0 real_cost = -166.305 T0308.try1-opt1.pdb.gz costs 0 real_cost = -265.303 T0308.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -265.953 ../refine.model5.ts-submitted costs 0 real_cost = -307.496 ../refine.model4.ts-submitted costs 0 real_cost = -298.802 ../refine.model3.ts-submitted costs 0 real_cost = -295.044 ../refine.model2.ts-submitted costs 0 real_cost = -306.202 ../refine.model1.ts-submitted costs 0 real_cost = -308.294 ../model5.ts-submitted costs 0 real_cost = -3.64429 ../model4.ts-submitted costs 0 real_cost = -262.936 ../model3.ts-submitted costs 0 real_cost = -282.273 ../model2.ts-submitted costs 0 real_cost = -258.128 ../model1.ts-submitted costs 0 real_cost = -262.638 align5 costs 0 real_cost = -25.8834 align4 costs 0 real_cost = -79.6953 align3 costs 0 real_cost = -185.891 align2 costs 0 real_cost = -15.2142 align1 costs 0 real_cost = -23.118 T0308.try1-opt2.pdb costs 0 real_cost = -262.924 model5-scwrl costs 0 real_cost = 69.3975 model5.ts-submitted costs 0 real_cost = -3.64429 model4-scwrl costs 0 real_cost = -266.399 model4.ts-submitted costs 0 real_cost = -262.936 model3-scwrl costs 0 real_cost = -279.508 model3.ts-submitted costs 0 real_cost = -282.273 model2-scwrl costs 0 real_cost = -264.88 model2.ts-submitted costs 0 real_cost = -258.128 model1-scwrl costs 0 real_cost = -266.069 model1.ts-submitted costs 0 real_cost = -262.638 2h57A costs 0 real_cost = -885.8 # command:CPU_time= 873.604 sec, elapsed time= 1241.57 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty