(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0308 ARL6, Homo sapiens, 165 res
    • gi|68371244|ref|XP_709240.1|_15:175 PREDICTED: similar to RAB1A, member RAS oncogene family isoform 2 [Danio rerio]
    • gi|88193099|pdb|2FOL|A_26:186 Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp [Taxonomy]
    • gi|88192430|pdb|2BCG|Y_9:169 Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex [Taxonomy]
    • gi|76621149|ref|XP_587868.2|_9:169 PREDICTED: similar to cell line NK14 derived transforming oncogene [Bos taurus]
    • gi|4056469|gb|AAC98042.1|_17:177 Strong similarity to gb|M95166 ADP-ribosylation factor from Arabidopsis thaliana. ESTs gb|Z25826, gb|R90191, gb|N65697, gb|AA713150, gb|T46332, gb|AA040967, gb|AA712956, gb|T46403, gb|T46050, gb|AI100391 and gb|Z25043 come from this gene [Taxonomy]
    • gi|25294174|pir||E86368 F5O8.5 protein - Arabidopsis thaliana [Taxonomy]
    • gi|13096181|pdb|1HUQ|A_3:164 Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) [Taxonomy]
    • gi|12084568|pdb|1G17|B_4:163 Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate [Taxonomy]
    • gi|12084567|pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate [Taxonomy]
    • gi|76658483|ref|XP_589241.2|_20:181 PREDICTED: similar to Ras-related protein Rab-5A isoform 1 [Bos taurus]
    • gi|76658481|ref|XP_869695.1| PREDICTED: similar to Ras-related protein Rab-5A isoform 2 [Bos taurus]
    • gi|55670035|pdb|1TU3|E_7:168 Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain [Taxonomy]
    • gi|55670034|pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain [Taxonomy]
    • gi|55670033|pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain [Taxonomy]
    • gi|55670032|pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain [Taxonomy]
    • gi|55670031|pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain [Taxonomy]
    • gi|40889551|pdb|1R2Q|A_6:167 Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A Resolution [Taxonomy]
    • gi|27066008|pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a [Taxonomy]
    • gi|642532|gb|AAB08927.1|_21:182 ras-related small GTP binding protein Rab5 [Taxonomy]
    • gi|508285|gb|AAA74081.1| Rab5c-like protein, similar to Canis familiaris Rab5c protein, PIR Accession Number S38625 [Taxonomy]
    • gi|27066012|pdb|1N6L|A_6:167 Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gtp [Taxonomy]
    • gi|27066010|pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp And Aluminum Fluoride [Taxonomy]
    • gi|27066009|pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp [Taxonomy]
    • gi|27066016|pdb|1N6N|A_6:167 Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp [Taxonomy]
    • gi|27066018|pdb|1N6O|A_6:167 Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp [Taxonomy]
    • gi|1065362|pdb|1HUR|B_16:176 Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length Non-Myristoylated [Taxonomy]
    • gi|1065361|pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length Non-Myristoylated [Taxonomy]
    • gi|27066019|pdb|1N6P|A_6:167 Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp [Taxonomy]
    • gi|55670226|pdb|1U81|A_1:160 Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With Gdp [Taxonomy]
    • gi|40889633|pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A [Taxonomy]
    • gi|42543522|pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying The Mutation Of The Catalytic Glutamate To Lysine [Taxonomy]
    • gi|46015752|pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A Sec7 Domain [Taxonomy]
    • gi|27066021|pdb|1N6R|A_6:167 Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp [Taxonomy]
    • gi|76618740|ref|XP_883986.1|_20:181 PREDICTED: similar to RAB5B, member RAS oncogene family isoform 6 [Bos taurus]
    • gi|76618732|ref|XP_871705.1| PREDICTED: similar to RAB5B, member RAS oncogene family isoform 3 [Bos taurus]
    • gi|68357838|ref|XP_684705.1|_10:169 PREDICTED: similar to RAB35, member RAS oncogene family (predicted) [Danio rerio]
    • gi|31615757|pdb|1O3Y|B_2:162 Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form [Taxonomy]
    • gi|31615756|pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form [Taxonomy]
    • gi|30749336|pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-Terminal Region In Complex With Arf1 Gtp Form [Taxonomy]
    • gi|13399898|pdb|1HFV|B_12:172 Chain B, Structure Of The Small G Protein Arf6 In Complex With Gtpgammas [Taxonomy]
    • gi|13399897|pdb|1HFV|A Chain A, Structure Of The Small G Protein Arf6 In Complex With Gtpgammas [Taxonomy]
    • gi|76618736|ref|XP_883928.1|_20:189 PREDICTED: similar to RAB5B, member RAS oncogene family isoform 5 [Bos taurus]
    • gi|76668547|ref|XP_585448.2|_223:383 PREDICTED: similar to RAB14, member RAS oncogene family [Bos taurus]
    • gi|76624275|ref|XP_588442.2|_36:197 PREDICTED: similar to Ras-related protein Rab-18 isoform 4 [Bos taurus]
    • gi|51247937|pdb|1VG9|H_9:173 Chain H, The Crystal Structures Of The Rep-1 Protein In Complex With C-Terminally Truncated Rab7 Protein [Taxonomy]
    • gi|51247935|pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex With C-Terminally Truncated Rab7 Protein [Taxonomy]
    • gi|51247933|pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex With C-Terminally Truncated Rab7 Protein [Taxonomy]
    • gi|51247931|pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With C-Terminally Truncated Rab7 Protein [Taxonomy]
    • gi|51247925|pdb|1VG1|A Chain A, Gdp-Bound Rab7 [Taxonomy]
    • gi|82408022|pdb|2B6H|A_29:189 Chain A, Structure Of Human Adp-Ribosylation Factor 5 [Taxonomy]
    • gi|50741401|ref|XP_419573.1|_14:174 PREDICTED: similar to RAB4A, member RAS oncogene family; Oncogene RAB4; RAB4, member RAS oncogene family [Gallus gallus]
    • gi|66361571|pdb|2BME|D_11:171 Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a [Taxonomy]
    • gi|66361570|pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a [Taxonomy]
    • gi|66361569|pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a [Taxonomy]
    • gi|66361568|pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a [Taxonomy]
    • gi|66361567|pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a [Taxonomy]
    • gi|76618738|ref|XP_585238.2|_20:198 PREDICTED: similar to RAB5B, member RAS oncogene family isoform 1 [Bos taurus]
    • gi|83753568|pdb|1X3S|A_15:176 Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp [Taxonomy]
    • gi|93279886|pdb|2G6B|A_10:172 Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue [Taxonomy]
    • gi|42543203|pdb|1OIV|B_30:190 Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp [Taxonomy]
    • gi|42543202|pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp [Taxonomy]
    • gi|75766050|pdb|2A5G|A_13:173 Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) [Taxonomy]
    • gi|76661316|ref|XP_873392.1|_8:169 PREDICTED: similar to RAB18, member RAS oncogene family (predicted) [Bos taurus]
    • gi|76639295|ref|XP_871153.1|_62:222 PREDICTED: similar to RAB35, member RAS oncogene family (predicted) [Bos taurus]
    • gi|83754993|pdb|2EW1|A_27:187 Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue [Taxonomy]
    • gi|76645964|ref|XP_869879.1|_29:191 PREDICTED: similar to Ras-related protein Rab-37 isoform 1 [Bos taurus]
    • gi|42543486|pdb|1R4A|D_2:162 Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex [Taxonomy]
    • gi|42543484|pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex [Taxonomy]
    • gi|42543482|pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex [Taxonomy]
    • gi|42543480|pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex [Taxonomy]
    • gi|9719734|gb|AAF97836.1|_14:174 Contains similarity to ras-related GTP binding protein from Oryza sativa gb|D13758 and is a member of the Ras PF|00071 family. [Arabidopsis thaliana]
    • gi|85082713|ref|XP_956972.1|_9:170 hypothetical protein ( (NM_017382) RAB11a, member RAS oncogene family [Mus musculus] sp|Q9JLX1|R11A_MOUSE RAS-RELATED PROTEIN RAB-11A gb|AAF36458.1|AF127669_1 (AF127669) small GTPase [Mus musculus] ) [Neurospora crassa OR74A]
    • gi|32414965|ref|XP_327962.1| hypothetical protein ( (NM_017382) RAB11a, member RAS oncogene family [Mus musculus] sp|Q9JLX1|R11A_MOUSE RAS-RELATED PROTEIN RAB-11A gb|AAF36458.1|AF127669_1 (AF127669) small GTPase [Mus musculus] ) [Neurospora crassa OR74A]
    • gi|28918054|gb|EAA27736.1| hypothetical protein ( (NM_017382) RAB11a, member RAS oncogene family [Mus musculus] sp|Q9JLX1|R11A_MOUSE RAS-RELATED PROTEIN RAB-11A gb|AAF36458.1|AF127669_1 (AF127669) small GTPase [Mus musculus] ) [Neurospora crassa]
    • gi|10120632|pdb|1D5C|A_1:162 Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp [Taxonomy]
    • gi|76645968|ref|XP_879487.1|_23:184 PREDICTED: similar to RAB37, member RAS oncogene family isoform 3 [Bos taurus]
    • gi|4557959|pdb|1ZBD|A_8:169 Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a [Taxonomy]
    • gi|60593433|pdb|1OIX|A_30:190 Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp And Pi [Taxonomy]
    • gi|42543204|pdb|1OIW|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas [Taxonomy]
    • gi|55630750|ref|XP_519779.1|_7:192 PREDICTED: similar to RAB2, member RAS oncogene family; small GTP binding protein RAB2A [Pan troglodytes]
    • gi|76658667|ref|XP_870111.1|_37:202 PREDICTED: similar to Ras-related protein Rab-33A (Small GTP-binding protein S10) isoform 2 [Bos taurus]
    • gi|88192998|pdb|2FG5|A_23:184 Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue [Taxonomy]
    • gi|73535779|pdb|1Z0K|C_9:169 Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 [Taxonomy]
    • gi|73535777|pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 [Taxonomy]
    • gi|58177141|pdb|1WA5|A_10:168 Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp [Taxonomy]
    • gi|94733749|emb|CAK11462.1|_11:171 novel protein similar to vertebrate RAB25, member RAS oncogene family (RAB25) [Danio rerio]