Best Alignments for T0307

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
256bA/T0307-256bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 256bA/T0307-256bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8223e+007.52e-05 256bA a.24.3.1
1ff9A/T0307-1ff9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ff9A/T0307-1ff9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1297e+001.06e-04 1ff9A c.2.1.3
d.81.1.2
1auiB/T0307-1auiB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1auiB/T0307-1auiB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1447e+001.93e-08 1auiB a.39.1.5
1svmA/T0307-1svmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1svmA/T0307-1svmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1495e+001.80e-04
2ap1A/T0307-2ap1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ap1A/T0307-2ap1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6667e+003.45e-04
1ugpA/T0307-1ugpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ugpA/T0307-1ugpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6875e+006.49e-06 d.149.1.1
2fkiA/T0307-2fkiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fkiA/T0307-2fkiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8512e+002.36e-06
2aaoA/T0307-2aaoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aaoA/T0307-2aaoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1964e+014.57e-14
1pmi/T0307-1pmi-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pmi/T0307-1pmi-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2251e+019.28e-06 1pmi b.82.1.3
1oksA/T0307-1oksA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oksA/T0307-1oksA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2796e+016.15e-05 a.8.5.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001