# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1odfA 290 1.65e-01 c.37.1.6 92782 2db0A 253 3.65e-01 1svmA 377 4.64e-01 1h1dA 221 6.97e-01 c.66.1.1 83452 1edg 380 8.18e-01 1edg c.1.8.3 28807 256bA 106 9.38e-01 256bA a.24.3.1 16539 1ff9A 450 9.48e-01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1zgyA 272 1.01e+00 1oz9A 150 1.16e+00 d.92.1.15 93808 2fk8A 318 1.16e+00 1z5hA 780 1.17e+00 1ugpA 203 1.33e+00 d.149.1.1 107831 1e7lA 157 1.49e+00 1en7A a.140.4.1,d.4.1.5 64728,64729 1zkdA 387 1.56e+00 1pmi 440 2.87e+00 1pmi b.82.1.3 28114 2gshA 414 2.97e+00 1wstA 417 2.99e+00 1pjr 724 3.61e+00 1pjr c.37.1.19,c.37.1.19 32391,32392 2cosA 54 3.68e+00 1ehyA 294 3.70e+00 1ehyA c.69.1.11 34693 1u61A 138 3.78e+00 a.149.1.1 107696 1gsoA 431 3.94e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1ztcA 221 4.41e+00 1q74A 303 4.85e+00 c.134.1.1 96019 8abp 306 5.91e+00 8abp c.93.1.1 35647 1sgmA 191 6.12e+00 a.4.1.9,a.121.1.1 105537,105538 1xwmA 217 6.28e+00 1zczA 464 6.60e+00 2ap1A 327 6.62e+00 1wkbA 810 6.70e+00 1yz4A 160 7.61e+00 1l3iA 192 7.63e+00 c.66.1.22 77676 1otvA 259 8.12e+00 a.132.1.4 93526 1psrA 100 8.15e+00 1psrA a.39.1.2 17180 1wx1A 335 8.97e+00 1xm3A 264 9.03e+00 1on3A 523 9.35e+00 c.14.1.4,c.14.1.4 87107,87108 2a61A 145 9.58e+00 1me8A 503 9.70e+00 c.1.5.1 79028 1gnlA 544 9.93e+00 e.26.1.1 70287 1fpzA 212 1.02e+01 1fpzA c.45.1.1 59976 1wu7A 434 1.05e+01 1v4vA 376 1.10e+01 c.87.1.3 100313 1r9jA 673 1.10e+01 1ls1A 295 1.10e+01 a.24.13.1,c.37.1.10 78170,78171 2g7sA 194 1.17e+01 1z8oA 404 1.19e+01 1np3A 338 1.19e+01 a.100.1.2,c.2.1.6 85946,85947 1te5A 257 1.25e+01 d.153.1.1 106795 1b79A 119 1.26e+01 1b79A a.81.1.1 18451 1y10A 407 1.30e+01 2czvC 120 1.34e+01 1uwcA 261 1.34e+01 c.69.1.17 100101 2a3qA 170 1.38e+01 1gw5S 142 1.40e+01 d.110.4.2 70633 1zt2B 212 1.44e+01 1w6sB 74 1.51e+01 1rrzA 86 1.53e+01 a.7.10.1 105086 1avsA 90 1.56e+01 1cll a.39.1.5 17226 1ex0A 731 1.59e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2gb7A 305 1.64e+01 1ir6A 424 1.67e+01 c.107.1.2 71342 1apyB 141 1.70e+01 1apyB 1zjjA 263 1.74e+01 1k8kA 418 1.76e+01 c.55.1.1,c.55.1.1 68305,68306 2a3nA 355 1.78e+01 7aatA 401 1.79e+01 1ajsA c.67.1.1 34250 1floA 422 1.79e+01 1floA a.60.9.1,d.163.1.1 18106,42166 1j55A 95 1.80e+01 a.39.1.2 77078 1svy 114 1.81e+01 1svy d.109.1.1 40831 2b0oE 301 1.82e+01 1zchA 255 1.86e+01 1unkA 87 1.93e+01 1cei a.28.2.1 16935 1hb6A 86 1.95e+01 a.11.1.1 70959 1ynpA 317 1.97e+01 1uc7A 125 1.98e+01 c.47.1.1 99163 2fwhA 134 2.06e+01 1hssA 124 2.16e+01 1bea a.52.1.2 17819 2cp8A 54 2.23e+01 1hp1A 516 2.25e+01 d.114.1.1,d.159.1.2 70976,70977 2fkiA 126 2.29e+01 1rr7A 129 2.31e+01 a.4.1.14 105075 1eu1A 780 2.40e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1ouvA 273 2.46e+01 a.118.18.1 93570 2b8iA 77 2.50e+01 1sz2A 332 2.51e+01 1vefA 395 2.52e+01 1w3iA 293 2.52e+01 c.1.10.1 109152 3proC 166 2.55e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1dd9A 338 2.58e+01 1dd9A e.13.1.1 43254 1ei6A 406 2.60e+01 c.76.1.4 90443 1nynA 131 2.60e+01 d.235.1.1 86410 1rxwA 336 2.61e+01 a.60.7.1,c.120.1.2 98059,98060 1rk6A 496 2.61e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1j5wA 298 2.70e+01 d.104.1.1 71589 1gnwA 211 2.72e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1ihbA 162 2.73e+01 1bd8 d.211.1.1 19161 2iu5A 195 2.78e+01 1rcwA 231 2.81e+01 a.132.1.4 97299 1dzaA 129 2.89e+01 7rsa d.5.1.1 37275 2ck3A 510 2.95e+01 1oe4A 247 3.01e+01 c.18.1.3 86895 2fcjA 119 3.01e+01 1c44A 123 3.07e+01 1qndA d.106.1.1 40795 2bo3A 94 3.13e+01 1z7uA 112 3.20e+01 1x9zA 188 3.22e+01 1z2wA 192 3.23e+01 1jogA 146 3.24e+01 a.24.16.2 77142 1yy7A 213 3.46e+01 2gpiA 91 3.51e+01 1xs5A 241 3.55e+01 1q8cA 151 3.59e+01 a.79.1.2 96202 2bl0C 142 3.66e+01 2aotA 292 3.69e+01 1v4pA 157 3.69e+01 1q0pA 223 3.69e+01 c.62.1.1 95507 1j6rA 214 3.70e+01 d.173.1.2 71598 1mqoA 227 3.71e+01 d.157.1.1 103846 1qo7A 394 3.73e+01 1qo7A c.69.1.11 34697 1h5wA 309 3.75e+01 e.27.1.1 65635 2aa4A 289 3.79e+01 1ly1A 181 3.85e+01 c.37.1.1 74334 1v7wA 807 3.97e+01 a.102.1.4,b.30.5.3 108411,108412 1wu3I 161 4.03e+01 1oksA 56 4.08e+01 a.8.5.1 93271 1jb0I 38 4.10e+01 1jb0I f.23.17.1 62826 1tkkA 366 4.12e+01 c.1.11.2,d.54.1.1 107089,107090 1k9uA 78 4.25e+01 a.39.1.10 84348 1sszA 34 4.35e+01 j.35.1.1 105999 2fbnA 198 4.37e+01 1j2jB 45 4.41e+01 a.7.8.1 84017 2a97A 439 4.42e+01 1m0uA 249 4.43e+01 a.45.1.1,c.47.1.5 78359,78360 1wmwA 330 4.43e+01 1gx5A 536 4.44e+01 e.8.1.4 70682 1h16A 759 4.45e+01 c.7.1.1 76462 1ddf 127 4.46e+01 1ddf a.77.1.2 18423 1ctj 89 4.48e+01 1ctj a.3.1.1 15798 1ddgA 374 4.50e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 2c46A 241 4.52e+01 1iruK 201 4.53e+01 d.153.1.4 71362 1fp2A 352 4.54e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1in4A 334 4.55e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1v71A 323 4.58e+01 1tr8A 102 4.60e+01 1g4wR 383 4.62e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1j1qA 261 4.64e+01 d.165.1.1 90768 2gsq 202 4.69e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1r9dA 787 4.75e+01 c.7.1.1 104865 2czdA 208 4.75e+01 1rqtA 37 4.75e+01 a.108.1.1 97771 1in6A 334 4.77e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1ltqA 301 4.78e+01 c.108.1.9,c.37.1.1 78208,78209 1jjfA 268 4.78e+01 c.69.1.2 66765 2fpqA 444 4.78e+01 1l7mA 211 4.83e+01 c.108.1.4 73664 1v54G 85 4.84e+01 f.23.2.1 100328 1lfkA 398 5.00e+01 a.104.1.1 77926 1e0eA 55 5.02e+01 1wjcA a.4.10.1 59147 1mijA 152 5.04e+01 a.4.1.1 79150 1eteA 134 5.07e+01 1eteA a.26.1.2 16869 1v1aA 309 5.12e+01 c.72.1.1 100249 1rm6C 161 5.15e+01 2f6mB 109 5.16e+01 1h8eA 510 5.16e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2cw6A 298 5.30e+01 1vlaA 150 5.37e+01 d.227.1.2 108735 1i1wA 303 5.41e+01 c.1.8.3 76732 1wdtA 665 5.52e+01 1ve0A 134 5.52e+01 2ahqA 76 5.62e+01 2avdA 219 5.62e+01 1pfvA 551 5.71e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1k6kA 143 5.74e+01 a.174.1.1 77274 1t3wA 148 5.76e+01 2citA 282 5.80e+01 1vimA 200 5.90e+01 c.80.1.3 100758 2gfnA 209 5.92e+01 1v54B 227 5.94e+01 b.6.1.2,f.17.2.1 100322,100323 1ztsA 139 5.97e+01 1l3eB 101 5.98e+01 g.53.1.1 73536 2bfdA 400 6.01e+01 1zarA 282 6.03e+01 1wgxA 73 6.03e+01 1kmqA 184 6.04e+01 c.37.1.8 84412 1x8bA 289 6.04e+01 1yg2A 179 6.10e+01 1auiB 169 6.12e+01 1auiB a.39.1.5 17325 2f8xM 63 6.14e+01 1o26A 232 6.21e+01 d.207.1.1 86566 1ygmA 118 6.29e+01 1q7zA 566 6.33e+01 c.1.21.2,c.1.26.1 96090,96091 1owcA 427 6.34e+01 a.103.1.1 104039 1chuA 540 6.43e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1cuk 203 6.46e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1ad1A 266 6.52e+01 1aj2 c.1.21.1 29668 1vb5A 276 6.55e+01 1mrg 263 6.55e+01 1mrj d.165.1.1 42183 1gweA 503 6.56e+01 e.5.1.1 70667 1yarA 233 6.59e+01 1zs9A 261 6.70e+01 2bjfA 329 6.72e+01 2axtF 45 6.77e+01 1w0hA 204 6.77e+01 1t13A 158 6.77e+01 1vhtA 218 6.79e+01 c.37.1.1 100700 1fpoA 171 6.81e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1jy5A 212 6.81e+01 d.124.1.1 71940 1m7yA 435 6.89e+01 c.67.1.4 78761 2g5cA 281 7.09e+01 1pxqA 35 7.09e+01 j.5.1.2 104382 1obdA 306 7.10e+01 d.143.1.1 86767 1wvfA 520 7.11e+01 1xouB 95 7.17e+01 1xg5A 279 7.19e+01 1oq9A 363 7.21e+01 a.25.1.2 87257 2gwfB 134 7.22e+01 1k66A 149 7.29e+01 c.23.1.1 90941 1qfxA 460 7.33e+01 1qfxA c.60.1.2 33994 1ypyA 184 7.33e+01 1jfzA 154 7.40e+01 a.149.1.1 66655 1c7sA 858 7.43e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1fl1A 230 7.48e+01 1at3A b.57.1.1 27023 1yqtA 538 7.50e+01 1np6A 174 7.57e+01 c.37.1.10 85954 1j8uA 325 7.57e+01 d.178.1.1 71611 2gm5A 139 7.57e+01 1pbyA 489 7.66e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2d9iA 96 7.67e+01 1nxhA 126 7.68e+01 a.200.1.1 92300 1fjgK 129 7.76e+01 1fjfK c.55.4.1 33733 1vizA 240 7.77e+01 c.1.4.1 100784 2fp4B 395 7.82e+01 1ckmA 330 7.82e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1wleA 501 7.90e+01 1b0nB 57 7.90e+01 1b0nB a.34.1.1 17002 1jk0B 345 7.92e+01 a.25.1.2 63143 1gpmA 525 8.02e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1rljA 139 8.02e+01 c.23.5.7 104983 1ohzB 60 8.02e+01 a.139.1.1 93044 2b7uA 257 8.09e+01 1wxiA 275 8.14e+01 1ys1X 320 8.18e+01 1onwA 390 8.18e+01 b.92.1.7,c.1.9.13 87172,87173 1i2tA 61 8.19e+01 1i2tA a.144.1.1 61582 2es4D 332 8.20e+01 1jnyA 435 8.20e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1yn9A 169 8.33e+01 1sk4A 163 8.54e+01 d.118.1.1 105664 1np7A 489 8.54e+01 a.99.1.1,c.28.1.1 80677,80678 1zpyA 95 8.55e+01 2rslA 140 8.57e+01 2rslA c.53.1.1 33345 1o9gA 250 8.60e+01 c.66.1.29 86692 1vkyA 347 8.68e+01 e.53.1.1 108696 1fyhB 229 8.69e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1rfyA 102 8.71e+01 1zljA 78 8.76e+01 1tzzA 392 8.82e+01 2au3A 407 8.86e+01 1hf8A 289 8.92e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355