# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 256bA 106 1.96e-01 256bA a.24.3.1 16539 1z91A 147 5.01e-01 2ap1A 327 5.33e-01 1zpyA 95 8.25e-01 1h1dA 221 8.97e-01 c.66.1.1 83452 1zchA 255 9.88e-01 1ugpA 203 1.04e+00 d.149.1.1 107831 1w68A 390 1.43e+00 a.25.1.2 109216 2cw6A 298 1.61e+00 1g24A 211 1.71e+00 1g24A d.166.1.1 42270 1xnfA 275 1.88e+00 1svmA 377 2.15e+00 1wgsA 133 2.80e+00 1nh2D 121 3.25e+00 a.32.1.1,b.56.1.1 91876,91877 2db0A 253 3.47e+00 1unkA 87 3.50e+00 1cei a.28.2.1 16935 1zczA 464 3.78e+00 1j55A 95 4.06e+00 a.39.1.2 77078 1avsA 90 4.19e+00 1cll a.39.1.5 17226 2a3qA 170 4.43e+00 1jogA 146 4.78e+00 a.24.16.2 77142 2cosA 54 4.86e+00 1oz9A 150 5.25e+00 d.92.1.15 93808 1oksA 56 5.46e+00 a.8.5.1 93271 1yg2A 179 5.57e+00 1u7kA 131 5.64e+00 1k8kA 418 5.67e+00 c.55.1.1,c.55.1.1 68305,68306 1rrzA 86 5.84e+00 a.7.10.1 105086 1psrA 100 5.97e+00 1psrA a.39.1.2 17180 2cfxA 144 6.54e+00 2fbhA 146 6.82e+00 2bl0C 142 6.99e+00 2a61A 145 7.85e+00 1fyhB 229 7.86e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 1z5hA 780 8.79e+00 1pxqA 35 8.84e+00 j.5.1.2 104382 1j2jB 45 9.31e+00 a.7.8.1 84017 2fkiA 126 1.03e+01 1gvnA 90 1.08e+01 a.8.2.1 76353 1nmeA 146 1.09e+01 c.17.1.1 85874 2awfA 172 1.16e+01 1vefA 395 1.17e+01 1wu9A 80 1.26e+01 1pfvA 551 1.32e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2gd9A 189 1.34e+01 1puoA 170 1.35e+01 a.101.1.1,a.101.1.1 95134,95135 1jg1A 235 1.36e+01 c.66.1.7 66661 1e7lA 157 1.37e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1zkdA 387 1.37e+01 1lfkA 398 1.38e+01 a.104.1.1 77926 1nnvA 110 1.44e+01 d.17.7.1 92012 1zs9A 261 1.44e+01 1vhsA 175 1.45e+01 d.108.1.1 100698 1zkrA 153 1.54e+01 1odfA 290 1.57e+01 c.37.1.6 92782 1v8qA 85 1.57e+01 b.84.4.1 108428 1u5tB 169 1.62e+01 a.4.5.54,a.4.5.54 107686,107687 1u61A 138 1.62e+01 a.149.1.1 107696 2cvcA 545 1.65e+01 1wm1A 317 1.65e+01 c.69.1.7 109405 2fcjA 119 1.66e+01 1v74A 107 1.68e+01 d.243.1.1 100442 1v4pA 157 1.73e+01 1sxvA 172 1.74e+01 1tuwA 109 1.79e+01 d.58.4.8 107346 1rr7A 129 1.79e+01 a.4.1.14 105075 1jk0B 345 1.79e+01 a.25.1.2 63143 1uz3A 102 1.82e+01 1ctj 89 1.85e+01 1ctj a.3.1.1 15798 1vb5A 276 1.89e+01 1mexH 215 1.90e+01 b.1.1.1,b.1.1.2 91257,91258 1ykiA 217 1.91e+01 1k9uA 78 1.95e+01 a.39.1.10 84348 1q5nA 454 1.95e+01 a.127.1.1 95901 2czvC 120 1.99e+01 2b5gA 171 2.01e+01 1ve1A 304 2.06e+01 1wa8A 99 2.06e+01 1s6cA 183 2.08e+01 a.39.1.5 98594 1vjhA 122 2.10e+01 d.129.3.1 100811 1q77A 138 2.16e+01 c.26.2.4 96023 1s0yA 76 2.25e+01 d.80.1.1 98314 1ls9A 91 2.28e+01 a.3.1.1 78177 1dzkA 157 2.30e+01 1obpA b.60.1.1 27096 1xr4A 509 2.32e+01 1l3iA 192 2.32e+01 c.66.1.22 77676 1g8iA 190 2.35e+01 1rec a.39.1.5 60363 1ff9A 450 2.36e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1ehyA 294 2.48e+01 1ehyA c.69.1.11 34693 1y0kA 209 2.48e+01 1llmC 88 2.52e+01 g.37.1.1,g.37.1.1 91059,91060 1kcvH 217 2.58e+01 b.1.1.1,b.1.1.2 72315,72316 1l7yA 94 2.60e+01 d.15.1.6 73676 1df4A 68 2.64e+01 1aikN h.3.2.1 45719 1krhA 338 2.64e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1z23A 163 2.64e+01 1bkjA 240 2.69e+01 1bkjA d.90.1.1 40243 1ve0A 134 2.70e+01 1z8uA 102 2.72e+01 1yumA 242 2.77e+01 1g73A 162 2.80e+01 1fewA a.7.4.1 16332 1wlqC 201 2.83e+01 a.4.5.52 109400 2cruA 118 2.89e+01 1w6sB 74 2.92e+01 2f6mB 109 2.93e+01 1q5dA 419 2.97e+01 a.104.1.1 95891 2f0aA 98 3.00e+01 1ofuX 119 3.04e+01 c.37.1.22 86976 1exrA 148 3.05e+01 1cll a.39.1.5 17299 2fwhA 134 3.07e+01 1auiB 169 3.08e+01 1auiB a.39.1.5 17325 2g5cA 281 3.09e+01 1nynA 131 3.12e+01 d.235.1.1 86410 3nul 130 3.14e+01 3nul d.110.1.1 40891 1btkA 169 3.14e+01 1btkA b.55.1.1 26959 1nxhA 126 3.16e+01 a.200.1.1 92300 1zroA 602 3.17e+01 1z9hA 290 3.18e+01 1oe4A 247 3.20e+01 c.18.1.3 86895 1x7yA 400 3.27e+01 1uc7A 125 3.32e+01 c.47.1.1 99163 1t3uA 104 3.45e+01 d.244.1.1 99120 1pmzA 86 3.46e+01 a.39.1.10 104195 2gasA 307 3.54e+01 1bf5A 545 3.55e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1r6fA 310 3.58e+01 e.46.1.1 97149 1pmi 440 3.59e+01 1pmi b.82.1.3 28114 2ganA 190 3.69e+01 1z15A 344 3.71e+01 1iooA 196 3.72e+01 d.124.1.1 71250 1xwmA 217 3.74e+01 2b1fA 34 3.76e+01 1brfA 53 3.78e+01 1rb9 g.41.5.1 45236 2bfdA 400 3.80e+01 1ohzB 60 3.88e+01 a.139.1.1 93044 1hssA 124 3.91e+01 1bea a.52.1.2 17819 2ap3A 199 3.92e+01 1ne8A 117 4.02e+01 b.34.6.2 80424 1jb0I 38 4.03e+01 1jb0I f.23.17.1 62826 2bwvA 440 4.16e+01 1ls1A 295 4.16e+01 a.24.13.1,c.37.1.10 78170,78171 1fljA 260 4.17e+01 2cba b.74.1.1 27954 1uedA 406 4.38e+01 a.104.1.1 99256 1l8dA 112 4.40e+01 h.4.12.1 73687 1ir6A 424 4.41e+01 c.107.1.2 71342 2ltnA 181 4.49e+01 1led b.29.1.1 24024 1s0pA 176 4.57e+01 a.192.1.1 98300 1v54G 85 4.61e+01 f.23.2.1 100328 1pinA 163 4.63e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 2cg4A 152 4.89e+01 2d9iA 96 4.89e+01 2axiA 115 4.89e+01 1pgtA 210 4.91e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 2bo3A 94 4.95e+01 2a25A 193 4.95e+01 1txjA 171 5.05e+01 b.88.1.2 107424 2f91A 237 5.08e+01 1jw2A 72 5.11e+01 a.23.5.1 67372 1w2lA 99 5.19e+01 2arcA 164 5.26e+01 2arcA b.82.4.1 28148 1vkuA 100 5.31e+01 a.28.1.1 108690 1knzA 164 5.38e+01 e.34.1.1 68709 1rqtA 37 5.42e+01 a.108.1.1 97771 2bg9A 370 5.44e+01 2f8xM 63 5.44e+01 1jnyA 435 5.50e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1y10A 407 5.54e+01 5csmA 256 5.67e+01 5csmA a.130.1.2 19494 1dq3A 454 5.77e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1iv3A 152 5.77e+01 d.79.5.1 76828 2hddA 61 5.84e+01 2hddA a.4.1.1 15971 1fpoA 171 5.89e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2gwhA 298 5.89e+01 1r5iD 216 6.05e+01 a.202.1.1 97091 1t1gA 364 6.07e+01 c.41.1.2 106246 1r0pA 312 6.08e+01 d.144.1.7 96734 2agaA 190 6.18e+01 2a97A 439 6.28e+01 2au3A 407 6.39e+01 1o22A 170 6.47e+01 d.238.1.1 86557 2fbnA 198 6.50e+01 1gw5S 142 6.55e+01 d.110.4.2 70633 1mhnA 59 6.61e+01 b.34.9.1 84964 2ajgA 196 6.62e+01 1r9lA 309 6.72e+01 c.94.1.1 97262 1zoqC 47 6.74e+01 2fy6A 143 6.77e+01 1tr8A 102 6.83e+01 1l3eB 101 6.89e+01 g.53.1.1 73536 1fmjA 351 6.90e+01 c.37.1.5 59879 1aquA 297 7.01e+01 1aquA c.37.1.5 31942 2a2rA 210 7.14e+01 2c7pA 327 7.19e+01 1yemA 179 7.20e+01 1wy6A 172 7.24e+01 1t6sA 162 7.29e+01 2f1rA 171 7.32e+01 2gb7A 305 7.38e+01 1dro 122 7.38e+01 1btn b.55.1.1 26954 1fit 147 7.42e+01 1fit d.13.1.1 37499 2b7uA 257 7.51e+01 1oi2A 366 7.59e+01 c.119.1.2 103802 2gtsA 86 7.62e+01 1yozA 116 7.70e+01 1k94A 165 7.72e+01 a.39.1.8 68333 1lbkA 208 7.75e+01 a.45.1.1,c.47.1.5 73809,73810 1gyhA 318 7.75e+01 b.67.2.1 70757 1ttwA 138 7.86e+01 d.198.1.1 107308 1j1bA 420 7.87e+01 d.144.1.7 90758 1dkmA 410 7.90e+01 1dklA c.60.1.2 34000 1sszA 34 7.93e+01 j.35.1.1 105999 1dxrH 258 8.00e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 2aa4A 289 8.09e+01 1gk9A 260 8.15e+01 d.153.1.2 65246 2aghC 31 8.17e+01 1ulyA 192 8.25e+01 2bnxA 386 8.44e+01 1d7qA 143 8.45e+01 1d7qA b.40.4.5 25331 1i2aA 219 8.61e+01 e.24.1.1 90660 1lmq 129 8.61e+01 3lzt d.2.1.2 36588 1v54E 109 8.63e+01 a.118.11.1 100326 1c96A 753 8.67e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1wkaA 147 8.71e+01 1jadA 251 8.87e+01 h.4.10.1 66461 1h9mA 145 8.95e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834