# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1svmA 377 2.38e-01 1n25A 368 3.37e-01 c.37.1.20 85264 256bA 106 5.38e-01 256bA a.24.3.1 16539 1g24A 211 5.70e-01 1g24A d.166.1.1 42270 2ap1A 327 7.57e-01 1h1dA 221 8.52e-01 c.66.1.1 83452 1h0oA 390 8.67e-01 a.25.1.2 70845 2a9kB 223 9.45e-01 2gwxA 267 1.12e+00 2prgA a.123.1.1 19323 1vid 221 1.18e+00 1vid c.66.1.1 34178 1w68A 390 1.19e+00 a.25.1.2 109216 1jk0A 419 1.26e+00 a.25.1.2 63142 1zchA 255 1.45e+00 1xsm 390 1.67e+00 1xsm a.25.1.2 16804 1wgsA 133 2.03e+00 1y6iA 233 2.15e+00 1mmsA 140 2.42e+00 1mmsA a.4.7.1,d.47.1.1 16247,38766 2cw6A 298 2.76e+00 1zpyA 95 3.05e+00 1unkA 87 3.81e+00 1cei a.28.2.1 16935 1zczA 464 4.16e+00 1cei 94 4.31e+00 1cei a.28.2.1 16939 1ifyA 49 4.95e+00 a.5.2.1 71207 1z91A 147 5.31e+00 1fyhB 229 5.38e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 1z5hA 780 7.47e+00 1rdr 461 7.52e+00 1rdr e.8.1.4 43116 1y0kA 209 7.81e+00 1u7kA 131 7.93e+00 1qtrA 317 8.10e+00 1qtrA c.69.1.7 34660 1pxqA 35 8.27e+00 j.5.1.2 104382 1tn4 159 8.74e+00 1ncx a.39.1.5 17248 1wm1A 317 9.49e+00 c.69.1.7 109405 1lfkA 398 9.63e+00 a.104.1.1 77926 1dzkA 157 9.97e+00 1obpA b.60.1.1 27096 1xnfA 275 1.02e+01 1j7qA 86 1.09e+01 1j7rA a.39.1.5 62700 1oksA 56 1.13e+01 a.8.5.1 93271 2cfxA 144 1.14e+01 1u5tB 169 1.19e+01 a.4.5.54,a.4.5.54 107686,107687 1jogA 146 1.23e+01 a.24.16.2 77142 2a61A 145 1.24e+01 1zkdA 387 1.25e+01 1rrzA 86 1.27e+01 a.7.10.1 105086 1ugpA 203 1.31e+01 d.149.1.1 107831 1r0pA 312 1.36e+01 d.144.1.7 96734 1psrA 100 1.37e+01 1psrA a.39.1.2 17180 1ireA 204 1.39e+01 d.149.1.1 76769 1oz9A 150 1.44e+01 d.92.1.15 93808 1yumA 242 1.46e+01 1gvnA 90 1.49e+01 a.8.2.1 76353 2cosA 54 1.52e+01 1k8kA 418 1.53e+01 c.55.1.1,c.55.1.1 68305,68306 1dxrH 258 1.54e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 2fcjA 119 1.55e+01 1tuwA 109 1.57e+01 d.58.4.8 107346 1vhsA 175 1.61e+01 d.108.1.1 100698 1z15A 344 1.62e+01 1ff9A 450 1.63e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 2a3qA 170 1.77e+01 2bl0C 142 1.80e+01 1q77A 138 1.83e+01 c.26.2.4 96023 1vjhA 122 1.89e+01 d.129.3.1 100811 1vefA 395 1.96e+01 1j55A 95 2.06e+01 a.39.1.2 77078 1avsA 90 2.22e+01 1cll a.39.1.5 17226 1oe4A 247 2.23e+01 c.18.1.3 86895 1gkzA 388 2.23e+01 a.29.5.1,d.122.1.4 65268,65269 1ihnA 113 2.24e+01 1ihnA c.103.1.1 62388 2awfA 172 2.34e+01 1v74A 107 2.37e+01 d.243.1.1 100442 1yr4A 237 2.43e+01 1ls9A 91 2.46e+01 a.3.1.1 78177 1v8qA 85 2.49e+01 b.84.4.1 108428 1puoA 170 2.54e+01 a.101.1.1,a.101.1.1 95134,95135 1mhnA 59 2.56e+01 b.34.9.1 84964 1kcvH 217 2.57e+01 b.1.1.1,b.1.1.2 72315,72316 1fljA 260 2.59e+01 2cba b.74.1.1 27954 1xr4A 509 2.63e+01 1iooA 196 2.66e+01 d.124.1.1 71250 2f91A 237 2.71e+01 1t4fM 110 2.89e+01 1krhA 338 2.90e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1jk0B 345 2.93e+01 a.25.1.2 63143 2bwvA 440 2.95e+01 1ehyA 294 2.95e+01 1ehyA c.69.1.11 34693 1ykiA 217 3.01e+01 2b5gA 171 3.02e+01 2a25A 193 3.05e+01 1ofuX 119 3.07e+01 c.37.1.22 86976 1ctj 89 3.07e+01 1ctj a.3.1.1 15798 1mexH 215 3.11e+01 b.1.1.1,b.1.1.2 91257,91258 1gweA 503 3.12e+01 e.5.1.1 70667 1dq3A 454 3.12e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1nmeA 146 3.14e+01 c.17.1.1 85874 1g8iA 190 3.14e+01 1rec a.39.1.5 60363 1zkrA 153 3.15e+01 1txqB 86 3.19e+01 1u61A 138 3.20e+01 a.149.1.1 107696 1az9 457 3.22e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 1l3iA 192 3.28e+01 c.66.1.22 77676 1auiB 169 3.28e+01 1auiB a.39.1.5 17325 1r5qA 102 3.33e+01 a.186.1.1 97103 1hssA 124 3.34e+01 1bea a.52.1.2 17819 1dkmA 410 3.37e+01 1dklA c.60.1.2 34000 1r6fA 310 3.38e+01 e.46.1.1 97149 1mvwA 840 3.42e+01 i.15.1.1 79523 1btkA 169 3.46e+01 1btkA b.55.1.1 26959 1uedA 406 3.48e+01 a.104.1.1 99256 2gshA 414 3.53e+01 2arcA 164 3.65e+01 2arcA b.82.4.1 28148 2fkiA 126 3.65e+01 1s0yA 76 3.72e+01 d.80.1.1 98314 2gasA 307 3.89e+01 1j2jB 45 3.92e+01 a.7.8.1 84017 1q5dA 419 3.92e+01 a.104.1.1 95891 1jg1A 235 3.95e+01 c.66.1.7 66661 1hbzA 498 3.99e+01 1cf9A e.5.1.1 60937 1wl9A 440 4.01e+01 1e7lA 157 4.02e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1nynA 131 4.02e+01 d.235.1.1 86410 2axiA 115 4.04e+01 3nul 130 4.04e+01 3nul d.110.1.1 40891 2liv 344 4.15e+01 2liv c.93.1.1 35708 1nnvA 110 4.18e+01 d.17.7.1 92012 1v4pA 157 4.18e+01 1jnyA 435 4.23e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2aqwA 332 4.24e+01 1d0yA 761 4.32e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 1ksiA 642 4.34e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1bq9A 54 4.36e+01 1rb9 g.41.5.1 45238 1vb5A 276 4.46e+01 1pfvA 551 4.52e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2cg4A 152 4.54e+01 1eq9A 222 4.61e+01 5ptp b.47.1.2 26068 1pmi 440 4.64e+01 1pmi b.82.1.3 28114 1uc7A 125 4.68e+01 c.47.1.1 99163 1oe0A 230 4.70e+01 c.37.1.1 92788 1rljA 139 4.71e+01 c.23.5.7 104983 2gd9A 189 4.75e+01 1rr7A 129 4.81e+01 a.4.1.14 105075 1dkqA 410 4.89e+01 1dklA c.60.1.2 33998 1z9hA 290 4.89e+01 1f4lA 551 4.99e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1zroA 602 5.02e+01 1icrA 217 5.05e+01 1vfrA d.90.1.1 62274 1j1bA 420 5.10e+01 d.144.1.7 90758 1brfA 53 5.16e+01 1rb9 g.41.5.1 45236 1i9sA 210 5.17e+01 1i9sA c.45.1.1 62099 1xwmA 217 5.19e+01 1g7dA 106 5.33e+01 1g7dA a.71.1.1 18318 2a6mA 155 5.35e+01 5csmA 256 5.42e+01 5csmA a.130.1.2 19494 1l6oA 95 5.55e+01 b.36.1.1 84534 1s1eA 224 5.57e+01 1wu9A 80 5.59e+01 1dro 122 5.61e+01 1btn b.55.1.1 26954 1yg2A 179 5.65e+01 1kzyC 259 5.66e+01 c.15.1.4,c.15.1.4 73383,73384 1w9iA 770 5.88e+01 1sxvA 172 5.93e+01 1fvrA 327 5.94e+01 d.144.1.7 60047 2f0aA 98 5.94e+01 1d7qA 143 5.98e+01 1d7qA b.40.4.5 25331 1l7yA 94 6.00e+01 d.15.1.6 73676 1ve1A 304 6.01e+01 1i2aA 219 6.03e+01 e.24.1.1 90660 2a97A 439 6.06e+01 1f0xA 571 6.11e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1v7nV 163 6.13e+01 a.26.1.2 100476 2lbp 346 6.15e+01 2liv c.93.1.1 35709 1txjA 171 6.30e+01 b.88.1.2 107424 1q5nA 454 6.32e+01 a.127.1.1 95901 2aa4A 289 6.37e+01 1top 162 6.38e+01 1ncx a.39.1.5 17223 1xmpA 170 6.45e+01 1oi2A 366 6.46e+01 c.119.1.2 103802 1g5gA 481 6.53e+01 f.12.1.1,h.3.2.1 65155,65156 6mhtA 327 6.57e+01 6mhtA c.66.1.26 34226 1ve0A 134 6.59e+01 1w2lA 99 6.62e+01 2akaA 776 6.66e+01 1nh2D 121 6.69e+01 a.32.1.1,b.56.1.1 91876,91877 1zm7A 230 6.77e+01 5rubA 490 6.84e+01 1burA c.1.14.1,d.58.9.1 29382,39288 2cruA 118 6.87e+01 1r6rA 100 6.93e+01 a.190.1.1 97158 1vkuA 100 6.96e+01 a.28.1.1 108690 2fbhA 146 7.08e+01 1k9uA 78 7.10e+01 a.39.1.10 84348 1lshB 319 7.15e+01 f.7.1.1 74245 1t1gA 364 7.27e+01 c.41.1.2 106246 1gt91 357 7.33e+01 1urvA 190 7.33e+01 1ut0A 190 7.33e+01 a.1.1.2 108012 1ydnA 295 7.33e+01 1zs9A 261 7.41e+01 1kwiA 101 7.50e+01 d.17.1.3 77564 1jqeA 292 7.58e+01 c.66.1.19 71789 1edg 380 7.65e+01 1edg c.1.8.3 28807 1p5sA 203 7.75e+01 a.40.1.1 94147 1lmq 129 7.79e+01 3lzt d.2.1.2 36588 1h0hA 977 7.87e+01 b.52.2.2,c.81.1.1 76435,76436 2d09A 407 7.90e+01 1lvk 762 7.93e+01 1lvk b.34.3.1,c.37.1.9 24576,32173 2asuB 234 7.94e+01 1vom 762 7.95e+01 1lvk b.34.3.1,c.37.1.9 24577,32174 1v7oA 165 7.98e+01 d.67.1.2 100480 1usgA 346 8.09e+01 c.93.1.1 99864 1dcjA 81 8.16e+01 1dcjA d.68.3.3 59115 2dc3A 193 8.17e+01 1gsoA 431 8.26e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1ne8A 117 8.51e+01 b.34.6.2 80424 1h9mA 145 8.57e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1kbhB 59 8.62e+01 a.153.1.1 68383 1mvwB 145 8.63e+01 i.15.1.1 79524 2fy6A 143 8.63e+01 1kxu 333 8.75e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 2c7pA 327 8.81e+01 1tr8A 102 8.87e+01 2ajgA 196 8.98e+01