# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fyhB 229 2.40e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 1mmsA 140 2.75e+00 1mmsA a.4.7.1,d.47.1.1 16247,38766 1e6yA 569 2.87e+00 1mroA a.89.1.1,d.58.31.2 18529,39447 1z91A 147 3.70e+00 1ff9A 450 3.91e+00 1ff9A c.2.1.3,d.81.1.2 30039,39954 1zchA 255 3.91e+00 2ltnA 181 4.00e+00 1led b.29.1.1 24024 2a3qA 170 4.11e+00 1tuwA 109 4.65e+00 d.58.4.8 107346 1wm1A 317 4.94e+00 c.69.1.7 109405 1wgsA 133 5.78e+00 2gd9A 189 6.43e+00 1g24A 211 7.29e+00 1g24A d.166.1.1 42270 1mwpA 96 7.59e+00 1mwpA d.170.2.1 42453 1n25A 368 7.69e+00 c.37.1.20 85264 1qtrA 317 7.80e+00 1qtrA c.69.1.7 34660 1lenA 181 8.79e+00 1led b.29.1.1 24032 1vjhA 122 9.80e+00 d.129.3.1 100811 1e7lA 157 1.04e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1v8qA 85 1.07e+01 b.84.4.1 108428 1df4A 68 1.12e+01 1aikN h.3.2.1 45719 2ap1A 327 1.17e+01 2bl0C 142 1.24e+01 2a6mA 155 1.32e+01 256bA 106 1.33e+01 256bA a.24.3.1 16539 1wa8A 99 1.33e+01 1pmi 440 1.36e+01 1pmi b.82.1.3 28114 1rrzA 86 1.41e+01 a.7.10.1 105086 1lfkA 398 1.43e+01 a.104.1.1 77926 1zs9A 261 1.50e+01 1np6A 174 1.54e+01 c.37.1.10 85954 1mhnA 59 1.63e+01 b.34.9.1 84964 2b3hA 329 1.78e+01 1rdr 461 1.79e+01 1rdr e.8.1.4 43116 2cosA 54 1.88e+01 1r6rA 100 1.88e+01 a.190.1.1 97158 1vid 221 1.90e+01 1vid c.66.1.1 34178 1cei 94 1.93e+01 1cei a.28.2.1 16939 1nnvA 110 1.93e+01 d.17.7.1 92012 1unkA 87 2.01e+01 1cei a.28.2.1 16935 1v74A 107 2.02e+01 d.243.1.1 100442 1wgmA 98 2.06e+01 1s8nA 205 2.08e+01 c.23.1.1 105374 1h1dA 221 2.11e+01 c.66.1.1 83452 1jk0B 345 2.18e+01 a.25.1.2 63143 2a9kB 223 2.25e+01 1mexH 215 2.32e+01 b.1.1.1,b.1.1.2 91257,91258 1kzyC 259 2.41e+01 c.15.1.4,c.15.1.4 73383,73384 1txqB 86 2.43e+01 1pxqA 35 2.49e+01 j.5.1.2 104382 1hbzA 498 2.51e+01 1cf9A e.5.1.1 60937 1j2gA 319 2.52e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1y5oA 115 2.55e+01 1xewY 172 2.66e+01 1m4vA 204 2.69e+01 b.40.2.2,d.15.6.1 74459,74460 1oksA 56 2.69e+01 a.8.5.1 93271 2b7yA 182 2.70e+01 1ppjD 241 2.78e+01 a.3.1.3,f.23.11.1 104258,104259 1xneA 113 2.79e+01 1gweA 503 2.85e+01 e.5.1.1 70667 1psrA 100 2.89e+01 1psrA a.39.1.2 17180 1krhA 338 2.97e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1ytfD 121 2.99e+01 1ytfD a.32.1.1,b.56.1.1 16998,27011 2f1rA 171 3.15e+01 2fw2A 260 3.21e+01 2b8iA 77 3.34e+01 2arcA 164 3.37e+01 2arcA b.82.4.1 28148 1t4fM 110 3.63e+01 1l7yA 94 3.65e+01 d.15.1.6 73676 1v54G 85 3.65e+01 f.23.2.1 100328 1d7qA 143 3.69e+01 1d7qA b.40.4.5 25331 1gkzA 388 3.70e+01 a.29.5.1,d.122.1.4 65268,65269 1zaaC 87 3.70e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2occG 84 3.71e+01 2occG f.23.2.1 43522 1svy 114 3.76e+01 1svy d.109.1.1 40831 1r5qA 102 3.87e+01 a.186.1.1 97103 2g0qA 173 3.88e+01 1aayA 90 3.91e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1ss4A 153 3.96e+01 d.32.1.6 105976 1nh2D 121 3.98e+01 a.32.1.1,b.56.1.1 91876,91877 1ravA 127 4.03e+01 1swuA b.61.1.1 27409 2b5gA 171 4.08e+01 1l3eB 101 4.17e+01 g.53.1.1 73536 1h9mA 145 4.18e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1zpyA 95 4.21e+01 1ttwA 138 4.21e+01 d.198.1.1 107308 1tu9A 134 4.26e+01 a.1.1.2 107320 2f4iA 197 4.34e+01 1vhsA 175 4.38e+01 d.108.1.1 100698 7odcA 424 4.43e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1jqeA 292 4.50e+01 c.66.1.19 71789 2aotA 292 4.52e+01 1xouB 95 4.56e+01 1gyhA 318 4.65e+01 b.67.2.1 70757 1ifyA 49 4.71e+01 a.5.2.1 71207 1rr7A 129 4.76e+01 a.4.1.14 105075 2cw6A 298 4.78e+01 2a6hD 1524 4.79e+01 2dddA 225 4.80e+01 3nul 130 4.81e+01 3nul d.110.1.1 40891 2g5cA 281 4.90e+01 1i7wA 538 4.91e+01 3bct a.118.1.1 61909 1ieaA 192 4.92e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 1pinA 163 4.96e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1q8fA 313 5.03e+01 c.70.1.1 96203 1w6sB 74 5.03e+01 1xssA 225 5.07e+01 1wu9A 80 5.11e+01 1ox3A 109 5.19e+01 h.1.17.1 93668 2a61A 145 5.23e+01 1ofuX 119 5.29e+01 c.37.1.22 86976 1svmA 377 5.37e+01 1nmeA 146 5.41e+01 c.17.1.1 85874 1nrjA 158 5.63e+01 d.110.4.4 86124 1zuxA 224 5.66e+01 1whmA 92 5.70e+01 1y10A 407 5.85e+01 1g7dA 106 5.89e+01 1g7dA a.71.1.1 18318 1nqnA 122 5.94e+01 b.61.1.1 86042 1w2lA 99 5.95e+01 1r6fA 310 5.96e+01 e.46.1.1 97149 1ireA 204 6.03e+01 d.149.1.1 76769 1gydB 315 6.15e+01 b.67.2.1 70751 2bf6A 449 6.25e+01 1bf5A 545 6.28e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1k9uA 78 6.38e+01 a.39.1.10 84348 1jogA 146 6.39e+01 a.24.16.2 77142 1ugpA 203 6.41e+01 d.149.1.1 107831 2fbmA 291 6.51e+01 1m5iA 125 6.59e+01 h.4.13.1 78648 1qwiA 143 6.61e+01 d.227.1.1 96474 2ilk 160 6.78e+01 2ilk a.26.1.3 16885 1j55A 95 6.82e+01 a.39.1.2 77078 5rubA 490 6.82e+01 1burA c.1.14.1,d.58.9.1 29382,39288 2aq6A 147 7.05e+01 1h6wA 312 7.06e+01 d.231.1.1,b.108.1.1 83059,83060 2cg4A 152 7.06e+01 1uc7A 125 7.06e+01 c.47.1.1 99163 1a1iA 90 7.10e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2ahmA 88 7.26e+01 1ywmA 200 7.26e+01 2camA 127 7.36e+01 1swuA b.61.1.1 27407 1y6iA 233 7.39e+01 1egiA 147 7.46e+01 1eggA d.169.1.1 42331 2awfA 172 7.47e+01 1r0pA 312 7.48e+01 d.144.1.7 96734 2aqwA 332 7.51e+01 1di0A 158 7.73e+01 1di0A c.16.1.1 30957 1dyr 206 7.93e+01 1aoeA c.71.1.1 34916 2fojA 155 7.94e+01 1nynA 131 8.12e+01 d.235.1.1 86410 2fp7B 172 8.14e+01 1jdhA 529 8.19e+01 a.118.1.1 66549 1w9aA 147 8.26e+01 2furA 209 8.27e+01 1ihnA 113 8.35e+01 1ihnA c.103.1.1 62388 1utyA 187 8.36e+01 b.147.1.1 108036 1nxhA 126 8.46e+01 a.200.1.1 92300 1d8hA 311 8.58e+01 1d8iA d.63.1.1 39544 1kwiA 101 8.64e+01 d.17.1.3 77564 1h0hA 977 8.74e+01 b.52.2.2,c.81.1.1 76435,76436 4ptp 223 8.77e+01 1btkA 169 8.84e+01 1btkA b.55.1.1 26959 1s28A 132 8.91e+01 d.198.1.1 105223