Best Alignments for T0306

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2ae0X/T0306-2ae0X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ae0X/T0306-2ae0X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2985e+003.23e-06
2gaeA/T0306-2gaeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gaeA/T0306-2gaeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0873e+001.66e-04
2c3mA/T0306-2c3mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c3mA/T0306-2c3mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5233e+002.83e-03
1v04A/T0306-1v04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v04A/T0306-1v04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4109e+012.85e-04 b.68.6.2
1b0pA/T0306-1b0pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b0pA/T0306-1b0pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6503e+019.92e-04 c.36.1.8
c.36.1.12
c.48.1.3
c.64.1.1
d.58.1.5
1wucA/T0306-1wucA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wucA/T0306-1wucA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2076e+015.71e+00
1wi1A/T0306-1wi1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wi1A/T0306-1wi1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6976e+011.02e-02
1pgl1/T0306-1pgl1-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pgl1/T0306-1pgl1-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7979e+016.31e-01
1mrj/T0306-1mrj-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mrj/T0306-1mrj-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3920e+011.03e-04 1mrj d.165.1.1
1s5uA/T0306-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s5uA/T0306-1s5uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7601e+012.17e-01 d.38.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001