# List of top-scoring protein chains for T0306.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xpkA 388 1.56e+00 1xpmA 396 1.57e+00 1tvzA 388 1.90e+00 c.95.1.2,c.95.1.2 107367,107368 1xpkC 388 1.92e+00 1hxmA 229 1.95e+00 1hxmA b.1.1.1,b.1.1.2 61367,61368 1q5qH 235 5.85e+00 d.153.1.4 95911 1rypJ 204 6.08e+00 d.153.1.4 41878 1g0uI 205 6.12e+00 d.153.1.4 41891 1bo4A 168 6.15e+00 1bo4A d.108.1.1 40798 1q5rH 294 6.69e+00 d.153.1.4 95925 2c3mA 1231 7.30e+00 1u3iA 211 9.11e+00 1iruJ 205 1.15e+01 d.153.1.4 71361 1j2qH 202 1.18e+01 d.153.1.4 84036 1zk7A 467 1.80e+01 1zsvA 349 2.74e+01 1vluA 468 2.95e+01 c.82.1.1 108864 1sqrA 95 3.04e+01 2ae0X 345 3.16e+01 1p3wA 404 3.17e+01 c.67.1.3 87752 2gaeA 346 3.18e+01 1q7hA 153 3.23e+01 b.122.1.1,d.17.6.2 96042,96043 1bruP 241 3.84e+01 5ptp b.47.1.2 26273 1nfiE 213 3.95e+01 1iknD d.211.1.1 19172 1u0uA 397 4.14e+01 1oe8A 211 4.20e+01 a.45.1.1,c.47.1.5 86905,86906 1iknD 236 4.20e+01 1iknD d.211.1.1 19171 1o54A 277 4.25e+01 c.66.1.13 92482 1xesA 413 4.45e+01 1luaA 287 4.55e+01 c.2.1.7,c.58.1.4 78216,78217 1t3qB 788 4.84e+01 d.41.1.1,d.133.1.1 106369,106370 1jy2N 53 4.84e+01 h.1.8.1 67440 1j5yA 187 5.02e+01 a.4.5.1,d.94.2.1 71592,71593 1b69A 69 5.03e+01 2bb8 d.10.1.1 37479 1bb8 71 5.03e+01 2bb8 d.10.1.1 37478 1ov3A 138 5.07e+01 b.34.2.1,b.34.2.1 87451,87452 2a45G 57 5.25e+01 1rhfA 182 5.50e+01 b.1.1.1,b.1.1.4 97469,97470 2akaB 299 5.57e+01 2exjA 535 5.61e+01 1ng2A 193 5.64e+01 b.34.2.1,b.34.2.1 85660,85661 2ckiA 262 5.96e+01 1x5fA 120 6.13e+01 1i7fA 292 6.44e+01 1i7fA d.193.1.1 61888 1x68A 76 7.02e+01 1zd0A 150 7.08e+01 2c7bA 311 7.46e+01 1ehkA 562 7.48e+01 1ehkA f.24.1.1 43624 1xmeA 568 7.53e+01 1pgl1 185 7.61e+01 1ee0A 402 7.68e+01 1bi5A c.95.1.2,c.95.1.2 36007,36008 1bmv1 198 7.76e+01 1bmv1 2fb0A 94 7.95e+01 1w2zA 649 7.97e+01 1gsa 316 8.10e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1u0vA 393 8.12e+01 1uk8A 282 8.25e+01 c.69.1.10 107907 1jh6A 189 8.57e+01 d.61.1.1 66707 1kbvA 327 8.63e+01 b.6.1.3,b.6.1.3 68395,68396 1h3hA 60 8.64e+01 b.34.2.1 83468 1oebA 62 8.71e+01 b.34.2.1 86909 1utiA 58 8.81e+01 b.34.2.1 99962 1b34A 119 8.97e+01 1d3bA b.38.1.1 24796