# TARGET T0306 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0306.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 17.5341 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.068 0.002 0.001 0.005 0.068 0.857 2 K 0.541 0.005 0.002 0.013 0.037 0.403 3 L 0.878 0.002 0.003 0.019 0.019 0.078 4 A 0.962 0.001 0.001 0.011 0.006 0.018 5 V 0.975 0.001 0.001 0.006 0.005 0.012 6 V 0.927 0.001 0.001 0.007 0.042 0.021 7 T 0.725 0.004 0.002 0.007 0.187 0.075 8 G 0.305 0.002 0.004 0.009 0.532 0.147 9 Q 0.553 0.004 0.004 0.005 0.300 0.134 10 I 0.921 0.005 0.002 0.002 0.026 0.044 11 V 0.952 0.009 0.002 0.005 0.013 0.019 12 C 0.913 0.004 0.009 0.010 0.026 0.038 13 T 0.735 0.006 0.023 0.016 0.084 0.136 14 V 0.646 0.007 0.020 0.008 0.124 0.194 15 R 0.414 0.037 0.016 0.010 0.161 0.362 16 H 0.182 0.052 0.038 0.016 0.533 0.181 17 H 0.052 0.009 0.112 0.033 0.656 0.137 18 G 0.017 0.006 0.083 0.029 0.718 0.147 19 L 0.046 0.032 0.084 0.028 0.757 0.054 20 A 0.067 0.018 0.047 0.032 0.610 0.226 21 H 0.043 0.015 0.072 0.029 0.693 0.148 22 D 0.084 0.006 0.065 0.017 0.650 0.178 23 K 0.328 0.009 0.053 0.015 0.295 0.301 24 L 0.802 0.011 0.014 0.006 0.069 0.097 25 L 0.931 0.002 0.005 0.003 0.019 0.040 26 M 0.971 0.002 0.003 0.003 0.007 0.014 27 V 0.965 0.002 0.001 0.002 0.008 0.022 28 E 0.948 0.001 0.001 0.001 0.013 0.037 29 M 0.845 0.003 0.001 0.001 0.034 0.116 30 I 0.569 0.048 0.002 0.001 0.061 0.319 31 D 0.198 0.029 0.004 0.001 0.654 0.115 32 P 0.011 0.003 0.097 0.004 0.851 0.034 33 Q 0.005 0.001 0.116 0.004 0.845 0.029 34 G 0.013 0.020 0.076 0.002 0.856 0.033 35 N 0.023 0.046 0.012 0.003 0.584 0.332 36 P 0.047 0.079 0.035 0.005 0.566 0.268 37 D 0.041 0.014 0.048 0.006 0.672 0.220 38 G 0.103 0.011 0.024 0.003 0.611 0.249 39 Q 0.270 0.009 0.006 0.002 0.285 0.429 40 C 0.702 0.008 0.002 0.002 0.072 0.215 41 A 0.958 0.003 0.001 0.001 0.010 0.028 42 V 0.985 0.002 0.001 0.001 0.003 0.009 43 A 0.979 0.001 0.001 0.002 0.004 0.013 44 I 0.941 0.002 0.001 0.004 0.013 0.039 45 D 0.679 0.010 0.003 0.005 0.095 0.209 46 N 0.235 0.015 0.016 0.010 0.372 0.352 47 I 0.091 0.019 0.047 0.020 0.415 0.408 48 G 0.038 0.011 0.009 0.002 0.328 0.613 49 A 0.108 0.061 0.010 0.003 0.259 0.560 50 G 0.076 0.037 0.010 0.002 0.826 0.051 51 T 0.022 0.007 0.013 0.002 0.936 0.020 52 G 0.009 0.001 0.011 0.002 0.954 0.024 53 E 0.650 0.016 0.003 0.001 0.308 0.022 54 W 0.962 0.005 0.001 0.001 0.007 0.025 55 V 0.995 0.001 0.001 0.001 0.001 0.002 56 L 0.995 0.001 0.001 0.001 0.001 0.002 57 L 0.975 0.001 0.001 0.004 0.006 0.014 58 V 0.768 0.003 0.002 0.010 0.061 0.157 59 S 0.221 0.007 0.005 0.026 0.190 0.550 60 G 0.058 0.013 0.022 0.084 0.326 0.498 61 S 0.027 0.006 0.100 0.416 0.272 0.178 62 S 0.014 0.004 0.166 0.657 0.123 0.035 63 A 0.015 0.004 0.204 0.661 0.091 0.025 64 R 0.015 0.003 0.160 0.715 0.077 0.030 65 Q 0.016 0.004 0.167 0.665 0.104 0.045 66 A 0.016 0.012 0.101 0.635 0.151 0.086 67 H 0.011 0.011 0.070 0.551 0.195 0.162 68 K 0.008 0.010 0.056 0.262 0.369 0.295 69 S 0.005 0.007 0.048 0.145 0.458 0.337 70 E 0.007 0.007 0.030 0.079 0.436 0.441 71 T 0.011 0.011 0.015 0.046 0.345 0.571 72 S 0.026 0.009 0.006 0.021 0.189 0.749 73 P 0.095 0.028 0.027 0.097 0.193 0.559 74 V 0.348 0.031 0.025 0.039 0.186 0.371 75 D 0.465 0.008 0.034 0.020 0.228 0.245 76 L 0.829 0.003 0.007 0.007 0.070 0.085 77 C 0.959 0.001 0.001 0.003 0.015 0.021 78 V 0.986 0.001 0.001 0.003 0.004 0.006 79 I 0.979 0.001 0.001 0.006 0.004 0.009 80 G 0.973 0.001 0.001 0.006 0.007 0.013 81 I 0.960 0.001 0.001 0.007 0.011 0.019 82 V 0.885 0.004 0.003 0.020 0.029 0.059 83 D 0.681 0.003 0.006 0.028 0.118 0.164 84 E 0.569 0.004 0.013 0.038 0.160 0.217 85 V 0.608 0.029 0.019 0.032 0.120 0.191 86 V 0.594 0.037 0.013 0.023 0.255 0.079 87 S 0.304 0.020 0.021 0.026 0.565 0.063 88 G 0.060 0.003 0.013 0.012 0.831 0.082 89 G 0.081 0.004 0.011 0.009 0.798 0.097 90 Q 0.497 0.028 0.008 0.009 0.255 0.204 91 V 0.732 0.021 0.007 0.010 0.059 0.171 92 I 0.738 0.015 0.011 0.011 0.048 0.177 93 F 0.569 0.010 0.013 0.010 0.057 0.341 94 H 0.252 0.012 0.005 0.011 0.076 0.644 95 K 0.030 0.001 0.001 0.008 0.047 0.912