# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gaeA 346 9.25e-03 2ae0X 345 2.94e-02 2g5dA 422 9.71e-01 1i0lA 221 9.99e-01 c.61.1.1 71096 1sq9A 397 1.20e+00 b.69.4.1 105889 1wucA 250 1.77e+00 2c3mA 1231 2.05e+00 1wi1A 126 2.12e+00 1y0bA 197 2.75e+00 1n67A 359 2.90e+00 b.2.3.4,b.2.3.4 85354,85355 1pgl1 185 3.63e+00 2a74A 643 3.88e+00 1cqyA 99 4.31e+00 1b9zA b.3.1.1 22527 1vjhA 122 4.38e+00 d.129.3.1 100811 1vemA 516 7.59e+00 1v04A 355 7.99e+00 b.68.6.2 100240 1qy5A 269 8.54e+00 d.122.1.1 96573 1a34A 159 9.03e+00 1a34A b.121.7.1 23286 1at3A 247 9.03e+00 1at3A b.57.1.1 27021 1z5hA 780 9.29e+00 1wocA 103 9.37e+00 1kmvA 186 9.37e+00 c.71.1.1 72757 2bbkH 355 9.81e+00 2bbkH b.69.2.1 27634 2ghsA 326 1.10e+01 1vr8A 142 1.17e+01 1s5uA 138 1.19e+01 d.38.1.1 98573 2pth 193 1.20e+01 2pth c.56.3.1 33793 8dfr 189 1.27e+01 1aoeA c.71.1.1 34895 1sgjA 284 1.36e+01 c.1.12.5 105535 1rypJ 204 1.36e+01 d.153.1.4 41878 1vpjA 192 1.37e+01 1uheA 97 1.41e+01 1vqvA 306 1.51e+01 2gw6A 123 1.68e+01 2fdbM 164 1.70e+01 1g2rA 100 1.72e+01 1g2rA d.192.1.1 60231 1jofA 365 1.74e+01 b.69.10.1 71775 1wi5A 119 1.88e+01 1nulA 152 1.91e+01 1nulA c.61.1.1 34011 1yqzA 438 1.95e+01 1b9mA 265 2.17e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1dywA 173 2.27e+01 2cpl b.62.1.1 27505 1wdeA 294 2.30e+01 1ahsA 126 2.35e+01 1ahsA b.19.1.1 23794 1mrj 247 2.38e+01 1mrj d.165.1.1 42177 1uq5A 263 2.45e+01 d.165.1.1 99778 2fe5A 94 2.45e+01 1h3gA 601 2.47e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1n62B 809 2.48e+01 d.41.1.1,d.133.1.1 80092,80093 1e7uA 961 2.48e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1y2tA 142 2.51e+01 1guqA 348 2.53e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1q5fA 156 2.72e+01 d.24.1.1 104536 1m2tA 254 2.84e+01 d.165.1.1 84761 1rhfA 182 2.86e+01 b.1.1.1,b.1.1.4 97469,97470 1yemA 179 2.91e+01 1vhh 162 2.97e+01 1vhh d.65.1.2 39550 1e8yA 966 2.99e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1j48A 110 3.04e+01 b.1.7.1 84112 1efdN 266 3.15e+01 1efdN c.92.2.1 35597 1ixh 321 3.18e+01 1ixh c.94.1.1 35761 1wmhB 86 3.20e+01 1zh5A 195 3.43e+01 1jayA 212 3.44e+01 c.2.1.6 66478 1tqyB 415 3.48e+01 c.95.1.1,c.95.1.1 107247,107248 1xw3A 110 3.50e+01 1ryp2 233 3.54e+01 1ryp2 2awpA 198 3.63e+01 1xm8A 254 3.67e+01 1s68A 249 3.68e+01 d.142.2.4 98591 1yqvL 211 3.79e+01 1yueA 427 3.81e+01 1mrg 263 3.81e+01 1mrj d.165.1.1 42183 3cox 507 3.84e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1vlyA 338 3.89e+01 b.44.2.1,d.250.1.1 108871,108872 1d2fA 390 3.94e+01 1d2fA c.67.1.3 34411 1ms9A 648 3.95e+01 b.29.1.15,b.68.1.1 85088,85089 1ton 235 4.06e+01 5ptp b.47.1.2 26307 1ty9A 222 4.08e+01 2f0aA 98 4.17e+01 1v0jA 399 4.19e+01 1vkyA 347 4.21e+01 e.53.1.1 108696 1qauA 112 4.30e+01 1qauA b.36.1.1 24779 1zd0A 150 4.33e+01 1aoeA 192 4.33e+01 1aoeA c.71.1.1 34923 1lyqA 104 4.41e+01 b.1.18.17 78302 3gcb 470 4.47e+01 3gcb d.3.1.1 37032 1ixmA 192 4.52e+01 1ixmA d.123.1.1 41114 1oewA 329 4.56e+01 b.50.1.2 86924 1iyjB 817 4.57e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1jb0E 75 4.64e+01 1pse b.34.4.2 62824 1cz4A 185 4.66e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1rypL 212 4.69e+01 d.153.1.4 41880 1x8vA 455 4.73e+01 1pqhA 143 4.74e+01 b.52.2.1 95017 1v3yA 192 4.75e+01 1dyoA 160 4.83e+01 1dyoA b.18.1.7 23771 1u4bA 580 4.86e+01 c.55.3.5,e.8.1.1 107664,107665 1iooA 196 4.91e+01 d.124.1.1 71250 1uirA 314 4.94e+01 c.66.1.17 99429 2fg9A 178 4.97e+01 1udzA 182 5.10e+01 b.51.1.1 99239 1lfdA 87 5.11e+01 1lfdA d.15.1.5 37622 1h4rA 314 5.13e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1zkpA 268 5.38e+01 1wnyA 186 5.41e+01 1ro7A 259 5.50e+01 c.130.1.1 97667 1e9pA 151 5.55e+01 1mfmA b.1.8.1 22215 1ew4A 106 5.58e+01 1ew4A d.82.2.1 40023 1v0eA 666 5.63e+01 1txkA 498 5.83e+01 b.1.18.2,b.30.5.9 107425,107426 1y8qB 640 5.85e+01 1n9pA 207 5.85e+01 b.1.18.16 80343 1io1A 398 5.88e+01 1io1A e.32.1.1 62611 1ct9A 553 5.93e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1ti6B 274 5.94e+01 b.3.5.1,d.58.1.5 106976,106977 2asuB 234 5.96e+01 1v9sA 208 6.04e+01 1dnlA 199 6.10e+01 1ci0A b.45.1.1 25753 1x3mA 415 6.17e+01 1yndA 165 6.21e+01 1lf6A 684 6.23e+01 a.102.1.5,b.30.5.5 77918,77919 1a8d 452 6.34e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1ry6A 360 6.34e+01 c.37.1.9 98090 2c3gA 98 6.40e+01 1shyB 551 6.42e+01 b.69.12.1,g.16.2.1 105565,105566 1t0yA 122 6.44e+01 d.15.1.1 99066 1rocA 155 6.54e+01 b.1.22.1 97673 1sglA 209 6.54e+01 d.124.1.1 105536 2ey4C 82 6.55e+01 1knmA 130 6.73e+01 b.42.2.1 72781 1s9jA 341 6.73e+01 1wdtA 665 6.92e+01 1tp5A 119 7.04e+01 1rz3A 201 7.16e+01 c.37.1.6 98132 1q0eA 152 7.18e+01 b.1.8.1 95504 2ck3D 482 7.18e+01 1dcs 311 7.21e+01 1dcs b.82.2.1 28124 2f2fC 186 7.26e+01 1o97D 320 7.29e+01 c.26.2.3,c.31.1.2 81233,81234 1kkhA 317 7.33e+01 d.14.1.5,d.58.26.3 72645,72646 2afwA 329 7.60e+01 1h8eD 482 7.60e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1ja1A 622 7.61e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1bb9 115 7.70e+01 1bb9 b.34.2.1 24554 1hgxA 183 7.71e+01 1tc1A c.61.1.1 34027 2d4rA 147 7.72e+01 1xk5A 204 7.73e+01 1gpc 218 7.76e+01 1gpc b.40.4.7 25393 1jndA 420 7.93e+01 c.1.8.5,d.26.3.1 71757,71758 1qw2A 102 7.99e+01 d.249.1.1 96456 2czlA 272 8.02e+01 1cfzA 162 8.19e+01 1cfzA c.56.1.1 33754 1m98A 317 8.23e+01 a.175.1.1,d.17.4.6 78866,78867 1ryp1 222 8.23e+01 1ryp1 1fqtA 112 8.30e+01 1fqtA b.33.1.1 24441 1p35A 299 8.44e+01 1p35A b.28.1.1 23925 3fib 249 8.55e+01 3fib d.171.1.1 42455 1n0xL 215 8.58e+01 b.1.1.1,b.1.1.2 91532,91533 1um5L 219 8.58e+01 1vdmA 153 8.62e+01 1sr4C 166 8.90e+01 b.42.2.1 105950