# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gaeA 346 7.31e-02 2ae0X 345 1.01e-01 1pgl1 185 2.14e+00 2c3mA 1231 2.66e+00 1i0lA 221 3.08e+00 c.61.1.1 71096 1n67A 359 3.12e+00 b.2.3.4,b.2.3.4 85354,85355 1rhfA 182 3.56e+00 b.1.1.1,b.1.1.4 97469,97470 2g5dA 422 3.94e+00 2ghsA 326 4.16e+00 1rocA 155 4.30e+00 b.1.22.1 97673 1rypJ 204 4.56e+00 d.153.1.4 41878 1wi1A 126 5.45e+00 1nulA 152 6.75e+00 1nulA c.61.1.1 34011 1v04A 355 6.83e+00 b.68.6.2 100240 1kmvA 186 8.53e+00 c.71.1.1 72757 1sgjA 284 8.73e+00 c.1.12.5 105535 1vemA 516 8.89e+00 1y0bA 197 9.03e+00 1b9mA 265 1.05e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1vjhA 122 1.10e+01 d.129.3.1 100811 1wucA 250 1.17e+01 1s5uA 138 1.27e+01 d.38.1.1 98573 8dfr 189 1.37e+01 1aoeA c.71.1.1 34895 1qy5A 269 1.41e+01 d.122.1.1 96573 1g2rA 100 1.42e+01 1g2rA d.192.1.1 60231 1cqyA 99 1.46e+01 1b9zA b.3.1.1 22527 1sq9A 397 1.47e+01 b.69.4.1 105889 1wocA 103 1.59e+01 1ja1A 622 1.61e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2cwzA 141 1.73e+01 1sqrA 95 1.78e+01 1z5hA 780 1.80e+01 1oewA 329 2.19e+01 b.50.1.2 86924 2napA 723 2.26e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1a34A 159 2.30e+01 1a34A b.121.7.1 23286 1rypL 212 2.48e+01 d.153.1.4 41880 1ryp2 233 2.60e+01 1ryp2 1o54A 277 2.76e+01 c.66.1.13 92482 1ro7A 259 2.77e+01 c.130.1.1 97667 1grj 158 2.90e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1vc3B 97 2.92e+01 2gw6A 123 2.94e+01 1x3mA 415 3.07e+01 2bbkH 355 3.10e+01 2bbkH b.69.2.1 27634 1at3A 247 3.20e+01 1at3A b.57.1.1 27021 1aoeA 192 3.32e+01 1aoeA c.71.1.1 34923 2pth 193 3.33e+01 2pth c.56.3.1 33793 1hgxA 183 3.44e+01 1tc1A c.61.1.1 34027 2aukA 190 3.45e+01 3fib 249 3.48e+01 3fib d.171.1.1 42455 1tqyB 415 3.50e+01 c.95.1.1,c.95.1.1 107247,107248 1vr8A 142 3.52e+01 1a8d 452 3.59e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1pb7A 292 3.60e+01 c.94.1.1 88025 1vqvA 306 3.72e+01 2c3gA 98 3.76e+01 1byfA 125 3.85e+01 1byfA d.169.1.1 42419 1ti6B 274 3.93e+01 b.3.5.1,d.58.1.5 106976,106977 2fdbM 164 3.97e+01 1d2fA 390 4.01e+01 1d2fA c.67.1.3 34411 1q5fA 156 4.01e+01 d.24.1.1 104536 1uheA 97 4.02e+01 1wlgA 299 4.04e+01 1g2qA 187 4.07e+01 c.61.1.1 65117 1yueA 427 4.13e+01 1gwmA 153 4.20e+01 b.18.1.19 83348 1vhh 162 4.20e+01 1vhh d.65.1.2 39550 1b0uA 262 4.21e+01 1b0uA c.37.1.12 32370 1l2tA 235 4.33e+01 c.37.1.12 73514 1zd0A 150 4.40e+01 1pqhA 143 4.51e+01 b.52.2.1 95017 2d4rA 147 4.52e+01 1uq5A 263 4.54e+01 d.165.1.1 99778 1mrj 247 4.71e+01 1mrj d.165.1.1 42177 1v0jA 399 4.82e+01 1jayA 212 4.93e+01 c.2.1.6 66478 1ahsA 126 4.99e+01 1ahsA b.19.1.1 23794 1l1oC 181 5.04e+01 b.40.4.3 73480 1ixlA 131 5.25e+01 d.38.1.5 90717 1tc1A 220 5.33e+01 1tc1A c.61.1.1 34083 1yemA 179 5.40e+01 1vkdA 338 5.72e+01 b.67.2.4 108644 1gntA 553 5.75e+01 e.26.1.1 70290 1m98A 317 5.79e+01 a.175.1.1,d.17.4.6 78866,78867 2cx1A 187 5.80e+01 2a74A 643 6.12e+01 1x7dA 350 6.17e+01 1jb0E 75 6.20e+01 1pse b.34.4.2 62824 1wmhB 86 6.21e+01 1o97D 320 6.27e+01 c.26.2.3,c.31.1.2 81233,81234 1fqtA 112 6.28e+01 1fqtA b.33.1.1 24441 1t0yA 122 6.32e+01 d.15.1.1 99066 1y2tA 142 6.40e+01 1l3iA 192 6.58e+01 c.66.1.22 77676 1y8qB 640 6.67e+01 1ok8A 394 6.79e+01 b.1.18.4,f.10.1.1 93236,93237 1aly 146 6.83e+01 1aly b.22.1.1 23856 1zh5A 195 6.88e+01 1v9sA 208 6.93e+01 1ng2A 193 6.96e+01 b.34.2.1,b.34.2.1 85660,85661 1wwrA 171 7.05e+01 2bivA 243 7.07e+01 3gcb 470 7.10e+01 3gcb d.3.1.1 37032 1h8uA 117 7.14e+01 1h8uA d.169.1.1 60793 1n9pA 207 7.20e+01 b.1.18.16 80343 1oi2A 366 7.27e+01 c.119.1.2 103802 1dyoA 160 7.38e+01 1dyoA b.18.1.7 23771 1kzlA 208 7.47e+01 b.43.4.3,b.43.4.3 77635,77636 1sr9A 644 7.60e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2afwA 329 7.70e+01 1zsyA 357 7.93e+01 2cfxA 144 7.98e+01 1whsB 153 8.03e+01 1whtB 1knmA 130 8.08e+01 b.42.2.1 72781 1q6oA 216 8.09e+01 c.1.2.3 95986 1lzlA 323 8.18e+01 c.69.1.2 78306 1g291 372 8.18e+01 1g291 1guqA 348 8.21e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1mrg 263 8.27e+01 1mrj d.165.1.1 42183 1x8vA 455 8.40e+01 1cz4A 185 8.40e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1ckmA 330 8.51e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1pzsA 208 8.53e+01 b.1.8.1 104397 1ihgA 370 8.60e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1zx0A 236 8.70e+01 1dyqA 234 8.85e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1xw3A 110 8.93e+01 2auhB 59 8.99e+01