# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ae0X 345 8.84e-02 2gaeA 346 1.47e-01 1i0lA 221 8.65e-01 c.61.1.1 71096 1vemA 516 9.83e-01 1sq9A 397 1.51e+00 b.69.4.1 105889 1cqyA 99 1.60e+00 1b9zA b.3.1.1 22527 1wucA 250 1.62e+00 2c3mA 1231 1.66e+00 1v04A 355 2.55e+00 b.68.6.2 100240 1rhfA 182 2.91e+00 b.1.1.1,b.1.1.4 97469,97470 2pth 193 4.57e+00 2pth c.56.3.1 33793 1qy5A 269 5.03e+00 d.122.1.1 96573 2ghsA 326 5.47e+00 1n67A 359 5.58e+00 b.2.3.4,b.2.3.4 85354,85355 1uq5A 263 5.58e+00 d.165.1.1 99778 1vjhA 122 5.93e+00 d.129.3.1 100811 1ja1A 622 6.50e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1dywA 173 6.55e+00 2cpl b.62.1.1 27505 2a74A 643 6.81e+00 1l2tA 235 6.97e+00 c.37.1.12 73514 1tc1A 220 7.20e+00 1tc1A c.61.1.1 34083 1e7uA 961 8.21e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1rypJ 204 8.54e+00 d.153.1.4 41878 1b9mA 265 8.84e+00 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1wi1A 126 9.84e+00 1y0bA 197 9.86e+00 1a34A 159 9.96e+00 1a34A b.121.7.1 23286 1e8yA 966 1.04e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2gw6A 123 1.14e+01 1m98A 317 1.14e+01 a.175.1.1,d.17.4.6 78866,78867 1uheA 97 1.18e+01 1v0jA 399 1.19e+01 1wmhB 86 1.20e+01 1at3A 247 1.21e+01 1at3A b.57.1.1 27021 1g2rA 100 1.23e+01 1g2rA d.192.1.1 60231 2fdbM 164 1.27e+01 1q6oA 216 1.28e+01 c.1.2.3 95986 1vkdA 338 1.33e+01 b.67.2.4 108644 1hgxA 183 1.42e+01 1tc1A c.61.1.1 34027 1kmvA 186 1.44e+01 c.71.1.1 72757 2asfA 137 1.49e+01 1ryp2 233 1.53e+01 1ryp2 1sqrA 95 1.56e+01 1gvhA 396 1.57e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1yqzA 438 1.63e+01 1vdmA 153 1.64e+01 1sgjA 284 1.64e+01 c.1.12.5 105535 1s5uA 138 1.90e+01 d.38.1.1 98573 1m2tA 254 1.95e+01 d.165.1.1 84761 1zd0A 150 2.09e+01 1yemA 179 2.10e+01 2g5dA 422 2.15e+01 1tqyB 415 2.20e+01 c.95.1.1,c.95.1.1 107247,107248 1ro7A 259 2.23e+01 c.130.1.1 97667 2a50B 168 2.24e+01 1vqvA 306 2.26e+01 1wguA 136 2.26e+01 1ppfE 218 2.40e+01 1a7s b.47.1.2 26234 1ton 235 2.42e+01 5ptp b.47.1.2 26307 1wocA 103 2.43e+01 1azo 232 2.48e+01 1azo c.52.1.14 33329 1b0uA 262 2.49e+01 1b0uA c.37.1.12 32370 1ryp1 222 2.60e+01 1ryp1 1cz4A 185 2.65e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1d2fA 390 2.66e+01 1d2fA c.67.1.3 34411 1mrg 263 2.70e+01 1mrj d.165.1.1 42183 1wwrA 171 2.78e+01 1qauA 112 2.78e+01 1qauA b.36.1.1 24779 3gcb 470 2.82e+01 3gcb d.3.1.1 37032 1zsyA 357 2.86e+01 1g291 372 2.94e+01 1g291 1jayA 212 3.00e+01 c.2.1.6 66478 1q5fA 156 3.05e+01 d.24.1.1 104536 1ahsA 126 3.08e+01 1ahsA b.19.1.1 23794 1o97D 320 3.19e+01 c.26.2.3,c.31.1.2 81233,81234 1jx4A 352 3.31e+01 d.240.1.1,e.8.1.7 90378,90379 1nulA 152 3.31e+01 1nulA c.61.1.1 34011 1guqA 348 3.37e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1yueA 427 3.38e+01 1bdmA 327 3.46e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1qgdA 662 3.49e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1rocA 155 3.54e+01 b.1.22.1 97673 1o54A 277 3.56e+01 c.66.1.13 92482 1ok8A 394 3.61e+01 b.1.18.4,f.10.1.1 93236,93237 1wmhA 89 3.65e+01 1h8uA 117 3.67e+01 1h8uA d.169.1.1 60793 1z5hA 780 3.67e+01 1xpkC 388 3.87e+01 8dfr 189 3.89e+01 1aoeA c.71.1.1 34895 1xpmA 396 3.90e+01 1zboA 210 3.92e+01 1yndA 165 3.92e+01 1dyoA 160 3.94e+01 1dyoA b.18.1.7 23771 1gwmA 153 3.95e+01 b.18.1.19 83348 1p35A 299 4.04e+01 1p35A b.28.1.1 23925 1l2mA 118 4.11e+01 d.89.1.4 77657 1who 96 4.11e+01 1who b.7.3.1 23215 1vhh 162 4.14e+01 1vhh d.65.1.2 39550 1x0hA 112 4.14e+01 1ct9A 553 4.18e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1efyA 350 4.23e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1xocA 520 4.24e+01 1rypL 212 4.37e+01 d.153.1.4 41880 1a8d 452 4.43e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1pgl1 185 4.44e+01 1g0sA 209 4.49e+01 1g0sA d.113.1.1 60187 3cox 507 4.54e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1xm8A 254 4.54e+01 1wdeA 294 4.57e+01 1lyqA 104 4.65e+01 b.1.18.17 78302 1lf6A 684 4.69e+01 a.102.1.5,b.30.5.5 77918,77919 1q3lA 69 4.80e+01 1pk6C 129 4.81e+01 b.22.1.1 94803 1j48A 110 4.87e+01 b.1.7.1 84112 1t0yA 122 4.99e+01 d.15.1.1 99066 2fg9A 178 4.99e+01 1n9pA 207 5.04e+01 b.1.18.16 80343 2ew2A 316 5.08e+01 1jofA 365 5.09e+01 b.69.10.1 71775 1txkA 498 5.14e+01 b.1.18.2,b.30.5.9 107425,107426 1efdN 266 5.27e+01 1efdN c.92.2.1 35597 1qw2A 102 5.34e+01 d.249.1.1 96456 2b4aA 138 5.43e+01 1ihjA 98 5.43e+01 1pdr b.36.1.1 62382 1g8aA 227 5.43e+01 c.66.1.3 90506 1ckmA 330 5.50e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1el6A 219 5.56e+01 1el6B d.182.1.1 42606 1vpjA 192 5.59e+01 1x3mA 415 5.72e+01 1y2tA 142 5.73e+01 2booA 247 5.76e+01 2afwA 329 5.79e+01 1b2pA 119 5.80e+01 1b2pA b.78.1.1 27998 2cfeA 162 5.95e+01 1sglA 209 6.00e+01 d.124.1.1 105536 1xzzA 246 6.10e+01 1h3gA 601 6.11e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2bbkH 355 6.16e+01 2bbkH b.69.2.1 27634 1xcbA 211 6.16e+01 a.4.5.38,c.2.1.12 109552,109553 2dpmA 284 6.18e+01 2dpmA c.66.1.28 34246 1ti6B 274 6.19e+01 b.3.5.1,d.58.1.5 106976,106977 1i4uA 181 6.21e+01 b.60.1.1 61732 1txlA 215 6.22e+01 b.60.1.4 107429 1kzfA 230 6.34e+01 d.108.1.3 73354 1w6sA 599 6.38e+01 1o7qA 289 6.43e+01 c.68.1.9 92626 1vdnA 162 6.43e+01 1vc3B 97 6.50e+01 2auhB 59 6.54e+01 1fqtA 112 6.56e+01 1fqtA b.33.1.1 24441 1sr4C 166 6.77e+01 b.42.2.1 105950 1fyeA 229 6.79e+01 1fyeA c.23.16.4 31477 1g79A 218 6.83e+01 1ci0A b.45.1.1 25752 1dceA 567 7.10e+01 1dceA a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1vzoA 355 7.25e+01 d.144.1.7 108971 1jhfA 202 7.29e+01 a.4.5.2,b.87.1.1 63057,63058 1a2yB 116 7.30e+01 1gc1H b.1.1.1 19927 1rwiA 270 7.32e+01 b.68.9.1 97987 1v3yA 192 7.33e+01 1ixh 321 7.39e+01 1ixh c.94.1.1 35761 1h2bA 359 7.41e+01 b.35.1.2,c.2.1.1 90543,90544 1x7dA 350 7.42e+01 1x8vA 455 7.45e+01 1udzA 182 7.45e+01 b.51.1.1 99239 1dytA 133 7.51e+01 7rsa d.5.1.1 37288 1oewA 329 7.56e+01 b.50.1.2 86924 2eveA 157 7.57e+01 1yf2A 425 7.59e+01 1zcxA 178 7.63e+01 1ixmA 192 7.65e+01 1ixmA d.123.1.1 41114 2cx1A 187 7.70e+01 1zm0A 114 7.78e+01 1q3oA 109 7.81e+01 b.36.1.1 95700 1owcA 427 7.82e+01 a.103.1.1 104039 1zupA 315 7.83e+01 1grj 158 7.87e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1y8qB 640 7.88e+01 1zvpA 133 7.95e+01 1ew4A 106 8.03e+01 1ew4A d.82.2.1 40023 1pdkB 157 8.03e+01 1pdkB b.2.3.2 22427 1wi5A 119 8.03e+01 1byfA 125 8.10e+01 1byfA d.169.1.1 42419 1wpoA 256 8.12e+01 1lay b.57.1.1 27012 2fneA 117 8.12e+01 1pqhA 143 8.21e+01 b.52.2.1 95017 1n0xL 215 8.22e+01 b.1.1.1,b.1.1.2 91532,91533 1nh2D 121 8.37e+01 a.32.1.1,b.56.1.1 91876,91877 1bn7A 294 8.43e+01 1bn6A c.69.1.8 34677 1rjdA 334 8.48e+01 c.66.1.37 97558 1ms9A 648 8.49e+01 b.29.1.15,b.68.1.1 85088,85089 1m5q1 130 8.63e+01 1s9jA 341 8.64e+01 1vlyA 338 8.71e+01 b.44.2.1,d.250.1.1 108871,108872 1i8fA 81 8.75e+01 1i8fA b.38.1.1 61959 2fo3A 125 8.75e+01 2fcr 173 8.75e+01 1rcf c.23.5.1 31151 1h3nA 878 8.75e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2cwzA 141 8.89e+01 1mjfA 281 8.96e+01 c.66.1.17 79198