# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gaeA 346 9.05e-02 2ae0X 345 1.26e-01 1bmv1 198 2.22e+00 1bmv1 1pgl1 185 2.67e+00 1itcA 516 2.96e+00 b.3.1.1,c.1.8.1 83705,83706 2c3mA 1231 3.45e+00 1jpc 109 3.77e+00 1b2pA b.78.1.1 27986 1kekA 1231 3.89e+00 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528 1b0pA 1231 3.98e+00 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003 1n67A 359 4.09e+00 b.2.3.4,b.2.3.4 85354,85355 1i0lA 221 4.36e+00 c.61.1.1 71096 1rhfA 182 4.82e+00 b.1.1.1,b.1.1.4 97469,97470 2g5dA 422 4.91e+00 2ghsA 326 5.30e+00 1rocA 155 5.30e+00 b.1.22.1 97673 1rypJ 204 6.04e+00 d.153.1.4 41878 1wi1A 126 7.04e+00 1v1qA 134 7.54e+00 1h9sA 140 8.06e+00 1b9mA b.40.6.2,b.40.6.2 60843,60844 1nulA 152 8.60e+00 1nulA c.61.1.1 34011 1v04A 355 9.42e+00 b.68.6.2 100240 1y0bA 197 1.01e+01 1kmvA 186 1.03e+01 c.71.1.1 72757 1sgjA 284 1.07e+01 c.1.12.5 105535 1vemA 516 1.12e+01 1b9mA 265 1.28e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1vjhA 122 1.42e+01 d.129.3.1 100811 1wucA 250 1.51e+01 8dfr 189 1.63e+01 1aoeA c.71.1.1 34895 1s5uA 138 1.66e+01 d.38.1.1 98573 1qciA 262 1.73e+01 1qi7A d.165.1.1 42201 1g2rA 100 1.78e+01 1g2rA d.192.1.1 60231 1tc6A 236 1.80e+01 d.122.1.1 106756 1ja1A 622 1.84e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1cqyA 99 1.85e+01 1b9zA b.3.1.1 22527 1qy5A 269 1.89e+01 d.122.1.1 96573 1sq9A 397 1.95e+01 b.69.4.1 105889 1tyyA 339 2.04e+01 1wocA 103 2.07e+01 1miuA 738 2.10e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 2cwzA 141 2.17e+01 1z5hA 780 2.32e+01 1sqrA 95 2.37e+01 1oewA 329 2.92e+01 b.50.1.2 86924 2napA 723 3.10e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1ef1A 294 3.17e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1rypL 212 3.21e+01 d.153.1.4 41880 1a34A 159 3.24e+01 1a34A b.121.7.1 23286 1txyA 104 3.36e+01 1ryp2 233 3.38e+01 1ryp2 1ro7A 259 3.51e+01 c.130.1.1 97667 1grj 158 3.62e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1o54A 277 3.63e+01 c.66.1.13 92482 2er7E 330 3.64e+01 2er7E b.50.1.2 26779 1vc3B 97 3.77e+01 2gw6A 123 3.96e+01 1aoeA 192 4.00e+01 1aoeA c.71.1.1 34923 1x3mA 415 4.04e+01 1at3A 247 4.16e+01 1at3A b.57.1.1 27021 1vr8A 142 4.17e+01 2bbkH 355 4.19e+01 2bbkH b.69.2.1 27634 1hgxA 183 4.35e+01 1tc1A c.61.1.1 34027 1tqyB 415 4.37e+01 c.95.1.1,c.95.1.1 107247,107248 2pth 193 4.42e+01 2pth c.56.3.1 33793 2aukA 190 4.47e+01 2c0cA 362 4.62e+01 1ti6B 274 4.63e+01 b.3.5.1,d.58.1.5 106976,106977 1aw8B 91 4.70e+01 1aw8B 1pb7A 292 4.73e+01 c.94.1.1 88025 1wlpB 138 4.76e+01 1vqvA 306 4.82e+01 2c3gA 98 4.97e+01 1a8d 452 4.99e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1g2qA 187 5.02e+01 c.61.1.1 65117 3fib 249 5.04e+01 3fib d.171.1.1 42455 1byfA 125 5.07e+01 1byfA d.169.1.1 42419 1ov3A 138 5.10e+01 b.34.2.1,b.34.2.1 87451,87452 2fdbM 164 5.15e+01 1uheA 97 5.19e+01 1d2fA 390 5.24e+01 1d2fA c.67.1.3 34411 1b0uA 262 5.29e+01 1b0uA c.37.1.12 32370 1q5fA 156 5.32e+01 d.24.1.1 104536 1wlgA 299 5.41e+01 1l2tA 235 5.47e+01 c.37.1.12 73514 1gwmA 153 5.52e+01 b.18.1.19 83348 1vhh 162 5.54e+01 1vhh d.65.1.2 39550 1yueA 427 5.62e+01 1uq5A 263 5.66e+01 d.165.1.1 99778 1mrj 247 5.76e+01 1mrj d.165.1.1 42177 1qjvA 342 5.77e+01 1qjvA b.80.1.5 28035 1pqhA 143 5.82e+01 b.52.2.1 95017 1zd0A 150 5.85e+01 1v0jA 399 5.96e+01 2d4rA 147 6.00e+01 2fibA 269 6.17e+01 3fib d.171.1.1 42457 1l1oC 181 6.57e+01 b.40.4.3 73480 1xw4X 110 6.74e+01 1jayA 212 6.89e+01 c.2.1.6 66478 1ift 263 6.99e+01 1mrj d.165.1.1 42211 1g7oA 215 7.02e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1ixlA 131 7.02e+01 d.38.1.5 90717 1yemA 179 7.03e+01 1ahsA 126 7.12e+01 1ahsA b.19.1.1 23794 1iz0A 302 7.28e+01 b.35.1.2,c.2.1.1 83821,83822 2cx1A 187 7.37e+01 1m98A 317 7.49e+01 a.175.1.1,d.17.4.6 78866,78867 1zs7A 190 7.51e+01 1tc1A 220 7.51e+01 1tc1A c.61.1.1 34083 2a74A 643 7.81e+01 1vkdA 338 7.90e+01 b.67.2.4 108644 1wmhB 86 8.02e+01 1jb0E 75 8.11e+01 1pse b.34.4.2 62824 1l3iA 192 8.13e+01 c.66.1.22 77676 1e2uA 553 8.14e+01 1e1dA e.26.1.1 43362 1gntA 553 8.14e+01 e.26.1.1 70290 1be9A 119 8.16e+01 1pdr b.36.1.1 24774 1y2tA 142 8.22e+01 1y8qB 640 8.32e+01 1o97D 320 8.37e+01 c.26.2.3,c.31.1.2 81233,81234 1t0yA 122 8.37e+01 d.15.1.1 99066 1fqtA 112 8.40e+01 1fqtA b.33.1.1 24441 1x7dA 350 8.60e+01 1zh5A 195 8.71e+01 1ok8A 394 8.77e+01 b.1.18.4,f.10.1.1 93236,93237