# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qciA 262 1.88e+00 1qi7A d.165.1.1 42201 1kekA 1231 2.06e+00 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528 2napA 723 2.28e+00 2napA b.52.2.2,c.81.1.1 26926,35334 2c3mA 1231 2.43e+00 1b0pA 1231 2.65e+00 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003 1p3wA 404 3.11e+00 c.67.1.3 87752 1frpA 335 3.27e+00 1frpA e.7.1.1 42875 1nuyA 337 3.96e+00 e.7.1.1 86213 2c1cA 312 4.02e+00 1t3qB 788 4.03e+00 d.41.1.1,d.133.1.1 106369,106370 1wucA 250 6.69e+00 1wzzA 334 6.95e+00 1uq5A 263 7.66e+00 d.165.1.1 99778 1bmv1 198 8.09e+00 1bmv1 1sgjA 284 8.23e+00 c.1.12.5 105535 1dfmA 223 8.55e+00 1d2iA c.52.1.5 33295 1uirA 314 8.89e+00 c.66.1.17 99429 2f2lA 167 9.59e+00 3seb 238 9.90e+00 3seb b.40.2.2,d.15.6.1 25184,37773 1pgl1 185 1.03e+01 1ef1A 294 1.04e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1sqrA 95 1.06e+01 2bnjA 303 1.11e+01 1vhnA 318 1.14e+01 c.1.4.1 100693 1vdwA 254 1.18e+01 e.7.1.1 100569 1m4lA 307 1.22e+01 c.56.5.1 78604 1lnzA 342 1.27e+01 b.117.1.1,c.37.1.8 78112,78113 1ift 263 1.30e+01 1mrj d.165.1.1 42211 1uk8A 282 1.37e+01 c.69.1.10 107907 2d4qA 257 1.46e+01 1dbiA 280 1.48e+01 1gci c.41.1.1 32543 1ye8A 178 1.52e+01 1sglA 209 1.55e+01 d.124.1.1 105536 2a90A 240 1.57e+01 2ctc 307 1.62e+01 1aye c.56.5.1 33802 1yueA 427 1.66e+01 1iupA 282 1.76e+01 c.69.1.10 76815 2ae0X 345 1.96e+01 1a3aA 148 2.03e+01 1a3aA d.112.1.1 40917 1v8aA 265 2.05e+01 c.72.1.2 100494 1i1wA 303 2.13e+01 c.1.8.3 76732 1nmoA 247 2.15e+01 c.135.1.1 91980 1kbjA 412 2.18e+01 c.1.4.1 72280 1zx5A 300 2.24e+01 1zupA 315 2.26e+01 1r6lA 239 2.26e+01 d.14.1.4,d.101.1.1 97153,97154 1xa0A 328 2.27e+01 1h2bA 359 2.30e+01 b.35.1.2,c.2.1.1 90543,90544 2cxxA 190 2.31e+01 1vr0A 247 2.31e+01 1zboA 210 2.35e+01 1gklA 297 2.36e+01 c.69.1.2 65250 1v04A 355 2.38e+01 b.68.6.2 100240 1g5bA 221 2.39e+01 1g5bA d.159.1.3 60261 1jeyA 609 2.42e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1q5dA 419 2.42e+01 a.104.1.1 95891 2gaeA 346 2.45e+01 1wb4A 297 2.46e+01 1qh8A 478 2.53e+01 1qguA c.92.2.3 35633 1v58A 241 2.57e+01 c.47.1.9,d.17.3.1 108371,108372 1nnlA 225 2.61e+01 c.108.1.4 85906 1zbsA 291 2.62e+01 1kuuA 202 2.84e+01 d.153.2.1 73019 1oe8A 211 2.86e+01 a.45.1.1,c.47.1.5 86905,86906 1vhh 162 2.87e+01 1vhh d.65.1.2 39550 1nijA 318 2.96e+01 c.37.1.10,d.237.1.1 85741,85742 1lbvA 252 2.97e+01 e.7.1.1 73813 1o58A 303 2.99e+01 c.79.1.1 92491 1zd0A 150 3.02e+01 1sxgA 280 3.05e+01 2akaB 299 3.08e+01 1sq9A 397 3.12e+01 b.69.4.1 105889 1z7lA 276 3.23e+01 1cv2A 296 3.26e+01 1bn6A c.69.1.8 34680 1jy5A 212 3.28e+01 d.124.1.1 71940 1oz9A 150 3.32e+01 d.92.1.15 93808 2c1dA 264 3.33e+01 1jd5A 124 3.34e+01 g.52.1.1 66544 1xpmA 396 3.40e+01 1mj5A 302 3.46e+01 c.69.1.8 91285 1p0kA 349 3.50e+01 c.1.4.1 87648 1vdmA 153 3.52e+01 1ekqA 272 3.53e+01 1c3qA c.72.1.2 34941 2booA 247 3.59e+01 2fliA 220 3.70e+01 1xpkC 388 3.72e+01 1q47A 495 3.81e+01 b.69.12.1 104532 1n0uA 842 3.82e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1g0hA 252 3.82e+01 1dk4A e.7.1.1 60171 1n9lA 109 3.90e+01 d.110.3.6 85468 1bg4 302 3.97e+01 1taxA c.1.8.3 28806 1c4xA 285 4.00e+01 1c4xA c.69.1.10 34684 2gnpA 266 4.02e+01 1womA 271 4.14e+01 1jmsA 381 4.22e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1h7mA 102 4.37e+01 d.79.3.1 83485 1q1rA 431 4.38e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1qcwA 410 4.58e+01 1gox c.1.4.1 28622 1vlmA 219 4.62e+01 c.66.1.41 108836 1cfzA 162 4.77e+01 1cfzA c.56.1.1 33754 1h4rA 314 4.82e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1jjiA 311 4.82e+01 c.69.1.2 66766 1vl6A 388 4.86e+01 c.2.1.7,c.58.1.3 108724,108725 1z5rA 306 4.87e+01 1v3vA 333 4.98e+01 b.35.1.2,c.2.1.1 108345,108346 1xseA 295 4.98e+01 1dtdA 303 5.05e+01 1aye c.56.5.1 33823 2bwnA 401 5.14e+01 1tqyB 415 5.19e+01 c.95.1.1,c.95.1.1 107247,107248 1d2fA 390 5.20e+01 1d2fA c.67.1.3 34411 1rypK 198 5.20e+01 d.153.1.4 41879 1d8wA 426 5.21e+01 1de5A c.1.15.2 29394 1x0pA 143 5.22e+01 2bduA 297 5.33e+01 1tvzA 388 5.37e+01 c.95.1.2,c.95.1.2 107367,107368 1yzhA 214 5.44e+01 1u7nA 336 5.46e+01 c.77.1.4 107726 1w41A 101 5.47e+01 1y5mA 276 5.49e+01 1imjA 210 5.60e+01 c.69.1.23 71246 1v3wA 173 5.68e+01 b.81.1.5 100291 1a4mA 349 5.69e+01 1a4mA c.1.9.1 29014 1pqhA 143 5.79e+01 b.52.2.1 95017 2c0cA 362 5.82e+01 1j0hA 588 5.93e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1vj1A 363 5.94e+01 b.35.1.2,c.2.1.1 100794,100795 1m1nA 491 6.02e+01 c.92.2.3 78417 2cdcA 366 6.08e+01 1jhfA 202 6.13e+01 a.4.5.2,b.87.1.1 63057,63058 1a34A 159 6.14e+01 1a34A b.121.7.1 23286 1rzrA 332 6.20e+01 1tx4B 178 6.29e+01 1ctqA c.37.1.8 32045 1zxiB 809 6.31e+01 1sz6A 249 6.36e+01 1i7qB 193 6.44e+01 1qdlB c.23.16.1 61902 1a2yB 116 6.48e+01 1gc1H b.1.1.1 19927 1reqA 727 6.58e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1byfA 125 6.58e+01 1byfA d.169.1.1 42419 1fkx 349 6.64e+01 1a4mA c.1.9.1 29018 2a9dA 372 6.71e+01 1qw9A 502 6.72e+01 b.71.1.2,c.1.8.3 96466,96467 1dywA 173 6.77e+01 2cpl b.62.1.1 27505 2g09A 297 6.81e+01 1bn7A 294 6.83e+01 1bn6A c.69.1.8 34677 1f5nA 592 6.84e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 2fibA 269 6.85e+01 3fib d.171.1.1 42457 1cf7B 95 6.94e+01 1cf7B a.4.5.17 16152 1ihbA 162 7.00e+01 1bd8 d.211.1.1 19161 2bijA 305 7.06e+01 1woqA 267 7.29e+01 c.55.1.10,c.55.1.10 109462,109463 1o97D 320 7.31e+01 c.26.2.3,c.31.1.2 81233,81234 1t3kA 152 7.35e+01 c.46.1.1 106357 1xx9A 238 7.57e+01 1xtzA 264 7.62e+01 2bo9A 308 7.66e+01 1yoxA 250 7.79e+01 1k2fA 190 7.87e+01 b.8.1.2 68054 1xmeA 568 7.87e+01 1iruK 201 7.88e+01 d.153.1.4 71362 1dgwA 178 8.23e+01 1dgwA b.82.1.2 28090 1g7jB 116 8.25e+01 1f3rB b.1.1.1 19933 1i9zA 347 8.29e+01 1i9yA d.151.1.2 62102 2bv5A 282 8.29e+01 2b9hA 353 8.34e+01 2gjlA 328 8.40e+01 1mdwA 328 8.57e+01 d.3.1.3 84934 1zn8A 180 8.79e+01 1kwmA 402 8.85e+01 c.56.5.1,d.58.3.1 73079,73080 1xel 338 8.87e+01 1xel c.2.1.2 29786 2aukA 190 8.87e+01 1k7cA 233 8.93e+01 c.23.10.4 68267