Best Alignments for T0305

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1larA/T0305-1larA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1larA/T0305-1larA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0807e-471.12e-176 1larA c.45.1.2
c.45.1.2
2fh7A/T0305-2fh7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fh7A/T0305-2fh7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1624e-472.92e-173
1rpmA/T0305-1rpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rpmA/T0305-1rpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3427e-461.86e-181 2shpA c.45.1.2
2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5155e-446.13e-158 2shpA c.45.1.2
d.93.1.1
d.93.1.1
1a5y/T0305-1a5y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a5y/T0305-1a5y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1825e-424.00e-161 1pty c.45.1.2
2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4430e-424.55e-157
2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3052e-421.95e-165
1wchA/T0305-1wchA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wchA/T0305-1wchA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0591e-412.52e-157
2f71A/T0305-2f71A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f71A/T0305-2f71A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4662e-413.78e-163
2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8362e-411.57e-158

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001