/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0304.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0304.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0304/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h28A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175065444 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.99409 sec, elapsed time= 6.1127 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.08008 sec, elapsed time= 6.22499 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0304 numbered 1 through 122 Created new target T0304 from T0304.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2h28A expands to /projects/compbio/data/pdb/2h28.pdb.gz 2h28A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Read 109 residues and 865 atoms. # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.5147 sec, elapsed time= 8.74504 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -22.6636 # GDT_score(maxd=8,maxw=2.9)= -18.6813 # GDT_score(maxd=8,maxw=3.2)= -17.9813 # GDT_score(maxd=8,maxw=3.5)= -17.4013 # GDT_score(maxd=10,maxw=3.8)= -20.543 # GDT_score(maxd=10,maxw=4)= -20.0766 # GDT_score(maxd=10,maxw=4.2)= -19.6291 # GDT_score(maxd=12,maxw=4.3)= -23.0483 # GDT_score(maxd=12,maxw=4.5)= -22.4909 # GDT_score(maxd=12,maxw=4.7)= -21.9713 # GDT_score(maxd=14,maxw=5.2)= -23.8135 # GDT_score(maxd=14,maxw=5.5)= -23.0364 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2760000e+03 rmsd (weighted)= 1.2485422e+01 (unweighted)= 2.9948402e+01 superimposing iter= 1 total_weight= 2.0420902e+03 rmsd (weighted)= 7.9155618e+00 (unweighted)= 3.0145726e+01 superimposing iter= 2 total_weight= 1.0172312e+03 rmsd (weighted)= 7.1936625e+00 (unweighted)= 3.0329340e+01 superimposing iter= 3 total_weight= 8.8695001e+02 rmsd (weighted)= 7.0124655e+00 (unweighted)= 3.0454087e+01 superimposing iter= 4 total_weight= 8.6146781e+02 rmsd (weighted)= 6.9380439e+00 (unweighted)= 3.0529826e+01 superimposing iter= 5 total_weight= 8.5285185e+02 rmsd (weighted)= 6.8992576e+00 (unweighted)= 3.0576050e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1493885721.pdb -s /var/tmp/to_scwrl_1493885721.seq -o /var/tmp/from_scwrl_1493885721.pdb > /var/tmp/scwrl_1493885721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493885721.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -18.4579 # GDT_score(maxd=8,maxw=2.9)= -16.6488 # GDT_score(maxd=8,maxw=3.2)= -16.0206 # GDT_score(maxd=8,maxw=3.5)= -15.4237 # GDT_score(maxd=10,maxw=3.8)= -17.7527 # GDT_score(maxd=10,maxw=4)= -17.2856 # GDT_score(maxd=10,maxw=4.2)= -16.8631 # GDT_score(maxd=12,maxw=4.3)= -19.6084 # GDT_score(maxd=12,maxw=4.5)= -19.1107 # GDT_score(maxd=12,maxw=4.7)= -18.6554 # GDT_score(maxd=14,maxw=5.2)= -20.2393 # GDT_score(maxd=14,maxw=5.5)= -19.5889 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1539370134.pdb -s /var/tmp/to_scwrl_1539370134.seq -o /var/tmp/from_scwrl_1539370134.pdb > /var/tmp/scwrl_1539370134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1539370134.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -25.7009 # GDT_score(maxd=8,maxw=2.9)= -25.724 # GDT_score(maxd=8,maxw=3.2)= -24.5979 # GDT_score(maxd=8,maxw=3.5)= -23.4691 # GDT_score(maxd=10,maxw=3.8)= -25.0087 # GDT_score(maxd=10,maxw=4)= -24.2745 # GDT_score(maxd=10,maxw=4.2)= -23.5191 # GDT_score(maxd=12,maxw=4.3)= -25.3895 # GDT_score(maxd=12,maxw=4.5)= -24.6349 # GDT_score(maxd=12,maxw=4.7)= -23.9446 # GDT_score(maxd=14,maxw=5.2)= -24.4187 # GDT_score(maxd=14,maxw=5.5)= -23.4946 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_287582783.pdb -s /var/tmp/to_scwrl_287582783.seq -o /var/tmp/from_scwrl_287582783.pdb > /var/tmp/scwrl_287582783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_287582783.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -16.8224 # GDT_score(maxd=8,maxw=2.9)= -14.0375 # GDT_score(maxd=8,maxw=3.2)= -13.5101 # GDT_score(maxd=8,maxw=3.5)= -13.073 # GDT_score(maxd=10,maxw=3.8)= -15.7064 # GDT_score(maxd=10,maxw=4)= -15.3416 # GDT_score(maxd=10,maxw=4.2)= -14.9809 # GDT_score(maxd=12,maxw=4.3)= -17.7299 # GDT_score(maxd=12,maxw=4.5)= -17.2794 # GDT_score(maxd=12,maxw=4.7)= -16.8623 # GDT_score(maxd=14,maxw=5.2)= -18.4963 # GDT_score(maxd=14,maxw=5.5)= -17.8442 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1489397176.pdb -s /var/tmp/to_scwrl_1489397176.seq -o /var/tmp/from_scwrl_1489397176.pdb > /var/tmp/scwrl_1489397176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489397176.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -25 # GDT_score(maxd=8,maxw=2.9)= -23.8095 # GDT_score(maxd=8,maxw=3.2)= -22.416 # GDT_score(maxd=8,maxw=3.5)= -21.1153 # GDT_score(maxd=10,maxw=3.8)= -24.031 # GDT_score(maxd=10,maxw=4)= -23.1565 # GDT_score(maxd=10,maxw=4.2)= -22.3654 # GDT_score(maxd=12,maxw=4.3)= -25.4181 # GDT_score(maxd=12,maxw=4.5)= -24.5791 # GDT_score(maxd=12,maxw=4.7)= -23.8116 # GDT_score(maxd=14,maxw=5.2)= -24.8284 # GDT_score(maxd=14,maxw=5.5)= -23.7815 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_592068463.pdb -s /var/tmp/to_scwrl_592068463.seq -o /var/tmp/from_scwrl_592068463.pdb > /var/tmp/scwrl_592068463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_592068463.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0304.try1-opt2.pdb looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -16.1215 # GDT_score(maxd=8,maxw=2.9)= -14.8872 # GDT_score(maxd=8,maxw=3.2)= -14.1925 # GDT_score(maxd=8,maxw=3.5)= -13.6168 # GDT_score(maxd=10,maxw=3.8)= -15.4047 # GDT_score(maxd=10,maxw=4)= -15.0083 # GDT_score(maxd=10,maxw=4.2)= -14.6395 # GDT_score(maxd=12,maxw=4.3)= -16.7009 # GDT_score(maxd=12,maxw=4.5)= -16.2738 # GDT_score(maxd=12,maxw=4.7)= -15.8597 # GDT_score(maxd=14,maxw=5.2)= -17.0102 # GDT_score(maxd=14,maxw=5.5)= -16.4352 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2760000e+03 rmsd (weighted)= 1.6647744e+01 (unweighted)= 3.2501206e+01 superimposing iter= 1 total_weight= 1.8572057e+03 rmsd (weighted)= 1.1075223e+01 (unweighted)= 3.2444110e+01 superimposing iter= 2 total_weight= 1.0029950e+03 rmsd (weighted)= 1.0091765e+01 (unweighted)= 3.2408583e+01 superimposing iter= 3 total_weight= 9.0024228e+02 rmsd (weighted)= 9.7147451e+00 (unweighted)= 3.2380030e+01 superimposing iter= 4 total_weight= 8.8179674e+02 rmsd (weighted)= 9.4500816e+00 (unweighted)= 3.2349907e+01 superimposing iter= 5 total_weight= 8.6835527e+02 rmsd (weighted)= 9.2577821e+00 (unweighted)= 3.2303246e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0304)L77.C and (T0304)T78.C only 0.0000000e+00 apart, marking (T0304)T78.C as missing WARNING: atoms too close: (T0304)T78.N and (T0304)S79.N only 0.0000000e+00 apart, marking (T0304)T78.N as missing WARNING: atoms too close: (T0304)T78.CA and (T0304)S79.CA only 0.0000000e+00 apart, marking (T0304)T78.CA as missing WARNING: atoms too close: (T0304)N83.C and (T0304)R85.C only 0.0000000e+00 apart, marking (T0304)R85.C as missing WARNING: atoms too close: (T0304)P84.N and (T0304)H86.N only 0.0000000e+00 apart, marking (T0304)P84.N as missing WARNING: atoms too close: (T0304)P84.CA and (T0304)H86.CA only 0.0000000e+00 apart, marking (T0304)P84.CA as missing WARNING: atoms too close: (T0304)H88.C and (T0304)A94.C only 0.0000000e+00 apart, marking (T0304)A94.C as missing WARNING: atoms too close: (T0304)T89.N and (T0304)K95.N only 0.0000000e+00 apart, marking (T0304)T89.N as missing WARNING: atoms too close: (T0304)T89.CA and (T0304)K95.CA only 0.0000000e+00 apart, marking (T0304)T89.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.514019 # GDT_score = -20.5607 # GDT_score(maxd=8,maxw=2.9)= -18.7512 # GDT_score(maxd=8,maxw=3.2)= -18.2199 # GDT_score(maxd=8,maxw=3.5)= -17.7202 # GDT_score(maxd=10,maxw=3.8)= -19.4086 # GDT_score(maxd=10,maxw=4)= -19.0457 # GDT_score(maxd=10,maxw=4.2)= -18.7173 # GDT_score(maxd=12,maxw=4.3)= -20.4353 # GDT_score(maxd=12,maxw=4.5)= -20.0632 # GDT_score(maxd=12,maxw=4.7)= -19.6867 # GDT_score(maxd=14,maxw=5.2)= -20.3652 # GDT_score(maxd=14,maxw=5.5)= -19.802 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.476636 # GDT_score = -17.0561 # GDT_score(maxd=8,maxw=2.9)= -16.3681 # GDT_score(maxd=8,maxw=3.2)= -15.885 # GDT_score(maxd=8,maxw=3.5)= -15.4216 # GDT_score(maxd=10,maxw=3.8)= -16.59 # GDT_score(maxd=10,maxw=4)= -16.2745 # GDT_score(maxd=10,maxw=4.2)= -15.9455 # GDT_score(maxd=12,maxw=4.3)= -17.4819 # GDT_score(maxd=12,maxw=4.5)= -17.1203 # GDT_score(maxd=12,maxw=4.7)= -16.7635 # GDT_score(maxd=14,maxw=5.2)= -17.3314 # GDT_score(maxd=14,maxw=5.5)= -16.8234 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0304)S79.C and (T0304)L82.C only 0.0000000e+00 apart, marking (T0304)L82.C as missing WARNING: atoms too close: (T0304)G80.N and (T0304)N83.N only 0.0000000e+00 apart, marking (T0304)G80.N as missing WARNING: atoms too close: (T0304)G80.CA and (T0304)N83.CA only 0.0000000e+00 apart, marking (T0304)G80.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0304)T25.C and (T0304)E37.C only 0.0000000e+00 apart, marking (T0304)E37.C as missing WARNING: atoms too close: (T0304)V26.N and (T0304)G38.N only 0.0000000e+00 apart, marking (T0304)V26.N as missing WARNING: atoms too close: (T0304)V26.CA and (T0304)G38.CA only 0.0000000e+00 apart, marking (T0304)V26.CA as missing WARNING: atoms too close: (T0304)R47.C and (T0304)L53.C only 0.0000000e+00 apart, marking (T0304)L53.C as missing WARNING: atoms too close: (T0304)A48.N and (T0304)F54.N only 0.0000000e+00 apart, marking (T0304)A48.N as missing WARNING: atoms too close: (T0304)A48.CA and (T0304)F54.CA only 0.0000000e+00 apart, marking (T0304)A48.CA as missing WARNING: atoms too close: (T0304)D63.C and (T0304)P67.C only 0.0000000e+00 apart, marking (T0304)P67.C as missing WARNING: atoms too close: (T0304)Q64.N and (T0304)L68.N only 0.0000000e+00 apart, marking (T0304)Q64.N as missing WARNING: atoms too close: (T0304)Q64.CA and (T0304)L68.CA only 0.0000000e+00 apart, marking (T0304)Q64.CA as missing WARNING: atoms too close: (T0304)H88.C and (T0304)L92.C only 0.0000000e+00 apart, marking (T0304)L92.C as missing WARNING: atoms too close: (T0304)T89.N and (T0304)Y93.N only 0.0000000e+00 apart, marking (T0304)T89.N as missing WARNING: atoms too close: (T0304)T89.CA and (T0304)Y93.CA only 0.0000000e+00 apart, marking (T0304)T89.CA as missing WARNING: atoms too close: (T0304)T103.C and (T0304)L104.C only 0.0000000e+00 apart, marking (T0304)L104.C as missing WARNING: atoms too close: (T0304)L104.N and (T0304)S105.N only 0.0000000e+00 apart, marking (T0304)L104.N as missing WARNING: atoms too close: (T0304)L104.CA and (T0304)S105.CA only 0.0000000e+00 apart, marking (T0304)L104.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt2.gromacs0.pdb.gz looking for model 1 Error: Reading chain from PDB file T0304.try1-opt2.gromacs0.pdb.gz failed. # ReadConformPDB reading from PDB file T0304.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 Error: Reading chain from PDB file T0304.try25-opt2.gromacs0.repack-nonPC.pdb.gz failed. # ReadConformPDB reading from PDB file T0304.try25-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0304.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_637067751.pdb -s /var/tmp/to_scwrl_637067751.seq -o /var/tmp/from_scwrl_637067751.pdb > /var/tmp/scwrl_637067751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637067751.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1956590347.pdb -s /var/tmp/to_scwrl_1956590347.seq -o /var/tmp/from_scwrl_1956590347.pdb > /var/tmp/scwrl_1956590347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1956590347.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2008509213.pdb -s /var/tmp/to_scwrl_2008509213.seq -o /var/tmp/from_scwrl_2008509213.pdb > /var/tmp/scwrl_2008509213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2008509213.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1657054105.pdb -s /var/tmp/to_scwrl_1657054105.seq -o /var/tmp/from_scwrl_1657054105.pdb > /var/tmp/scwrl_1657054105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1657054105.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1006588665.pdb -s /var/tmp/to_scwrl_1006588665.seq -o /var/tmp/from_scwrl_1006588665.pdb > /var/tmp/scwrl_1006588665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006588665.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_570987543.pdb -s /var/tmp/to_scwrl_570987543.seq -o /var/tmp/from_scwrl_570987543.pdb > /var/tmp/scwrl_570987543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_570987543.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_600262129.pdb -s /var/tmp/to_scwrl_600262129.seq -o /var/tmp/from_scwrl_600262129.pdb > /var/tmp/scwrl_600262129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_600262129.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_986185160.pdb -s /var/tmp/to_scwrl_986185160.seq -o /var/tmp/from_scwrl_986185160.pdb > /var/tmp/scwrl_986185160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986185160.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_930497335.pdb -s /var/tmp/to_scwrl_930497335.seq -o /var/tmp/from_scwrl_930497335.pdb > /var/tmp/scwrl_930497335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_930497335.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1928959352.pdb -s /var/tmp/to_scwrl_1928959352.seq -o /var/tmp/from_scwrl_1928959352.pdb > /var/tmp/scwrl_1928959352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928959352.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1440906711.pdb -s /var/tmp/to_scwrl_1440906711.seq -o /var/tmp/from_scwrl_1440906711.pdb > /var/tmp/scwrl_1440906711.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1440906711.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1644125967.pdb -s /var/tmp/to_scwrl_1644125967.seq -o /var/tmp/from_scwrl_1644125967.pdb > /var/tmp/scwrl_1644125967.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1644125967.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1821305503.pdb -s /var/tmp/to_scwrl_1821305503.seq -o /var/tmp/from_scwrl_1821305503.pdb > /var/tmp/scwrl_1821305503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1821305503.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1917827786.pdb -s /var/tmp/to_scwrl_1917827786.seq -o /var/tmp/from_scwrl_1917827786.pdb > /var/tmp/scwrl_1917827786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1917827786.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1852821263.pdb -s /var/tmp/to_scwrl_1852821263.seq -o /var/tmp/from_scwrl_1852821263.pdb > /var/tmp/scwrl_1852821263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1852821263.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_25198869.pdb -s /var/tmp/to_scwrl_25198869.seq -o /var/tmp/from_scwrl_25198869.pdb > /var/tmp/scwrl_25198869.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25198869.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1681042236.pdb -s /var/tmp/to_scwrl_1681042236.seq -o /var/tmp/from_scwrl_1681042236.pdb > /var/tmp/scwrl_1681042236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681042236.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_631114344.pdb -s /var/tmp/to_scwrl_631114344.seq -o /var/tmp/from_scwrl_631114344.pdb > /var/tmp/scwrl_631114344.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_631114344.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1566137960.pdb -s /var/tmp/to_scwrl_1566137960.seq -o /var/tmp/from_scwrl_1566137960.pdb > /var/tmp/scwrl_1566137960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566137960.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1406343196.pdb -s /var/tmp/to_scwrl_1406343196.seq -o /var/tmp/from_scwrl_1406343196.pdb > /var/tmp/scwrl_1406343196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406343196.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1374027511.pdb -s /var/tmp/to_scwrl_1374027511.seq -o /var/tmp/from_scwrl_1374027511.pdb > /var/tmp/scwrl_1374027511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1374027511.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1330959410.pdb -s /var/tmp/to_scwrl_1330959410.seq -o /var/tmp/from_scwrl_1330959410.pdb > /var/tmp/scwrl_1330959410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1330959410.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_921279175.pdb -s /var/tmp/to_scwrl_921279175.seq -o /var/tmp/from_scwrl_921279175.pdb > /var/tmp/scwrl_921279175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921279175.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1358189638.pdb -s /var/tmp/to_scwrl_1358189638.seq -o /var/tmp/from_scwrl_1358189638.pdb > /var/tmp/scwrl_1358189638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358189638.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_944610121.pdb -s /var/tmp/to_scwrl_944610121.seq -o /var/tmp/from_scwrl_944610121.pdb > /var/tmp/scwrl_944610121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944610121.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_93776223.pdb -s /var/tmp/to_scwrl_93776223.seq -o /var/tmp/from_scwrl_93776223.pdb > /var/tmp/scwrl_93776223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93776223.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_704591714.pdb -s /var/tmp/to_scwrl_704591714.seq -o /var/tmp/from_scwrl_704591714.pdb > /var/tmp/scwrl_704591714.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704591714.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_336496608.pdb -s /var/tmp/to_scwrl_336496608.seq -o /var/tmp/from_scwrl_336496608.pdb > /var/tmp/scwrl_336496608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336496608.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_381359007.pdb -s /var/tmp/to_scwrl_381359007.seq -o /var/tmp/from_scwrl_381359007.pdb > /var/tmp/scwrl_381359007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_381359007.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_46505243.pdb -s /var/tmp/to_scwrl_46505243.seq -o /var/tmp/from_scwrl_46505243.pdb > /var/tmp/scwrl_46505243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46505243.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_928565071.pdb -s /var/tmp/to_scwrl_928565071.seq -o /var/tmp/from_scwrl_928565071.pdb > /var/tmp/scwrl_928565071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928565071.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1018426758.pdb -s /var/tmp/to_scwrl_1018426758.seq -o /var/tmp/from_scwrl_1018426758.pdb > /var/tmp/scwrl_1018426758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1018426758.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2003095591.pdb -s /var/tmp/to_scwrl_2003095591.seq -o /var/tmp/from_scwrl_2003095591.pdb > /var/tmp/scwrl_2003095591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2003095591.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_789590637.pdb -s /var/tmp/to_scwrl_789590637.seq -o /var/tmp/from_scwrl_789590637.pdb > /var/tmp/scwrl_789590637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_789590637.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_527997217.pdb -s /var/tmp/to_scwrl_527997217.seq -o /var/tmp/from_scwrl_527997217.pdb > /var/tmp/scwrl_527997217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_527997217.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_862200609.pdb -s /var/tmp/to_scwrl_862200609.seq -o /var/tmp/from_scwrl_862200609.pdb > /var/tmp/scwrl_862200609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862200609.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1360578180.pdb -s /var/tmp/to_scwrl_1360578180.seq -o /var/tmp/from_scwrl_1360578180.pdb > /var/tmp/scwrl_1360578180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360578180.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1128259345.pdb -s /var/tmp/to_scwrl_1128259345.seq -o /var/tmp/from_scwrl_1128259345.pdb > /var/tmp/scwrl_1128259345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128259345.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1848385768.pdb -s /var/tmp/to_scwrl_1848385768.seq -o /var/tmp/from_scwrl_1848385768.pdb > /var/tmp/scwrl_1848385768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1848385768.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_143591868.pdb -s /var/tmp/to_scwrl_143591868.seq -o /var/tmp/from_scwrl_143591868.pdb > /var/tmp/scwrl_143591868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_143591868.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_909735051.pdb -s /var/tmp/to_scwrl_909735051.seq -o /var/tmp/from_scwrl_909735051.pdb > /var/tmp/scwrl_909735051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_909735051.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1141808832.pdb -s /var/tmp/to_scwrl_1141808832.seq -o /var/tmp/from_scwrl_1141808832.pdb > /var/tmp/scwrl_1141808832.log Error: Couldn't open file /var/tmp/from_scwrl_1141808832.pdb or /var/tmp/from_scwrl_1141808832.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1141808832_b.pdb or decoys//var/tmp/from_scwrl_1141808832_b.pdb.gz for input Trying /var/tmp/from_scwrl_1141808832_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1141808832_b.pdb or /var/tmp/from_scwrl_1141808832_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1141808832_a.pdb or decoys//var/tmp/from_scwrl_1141808832_a.pdb.gz for input Trying /var/tmp/from_scwrl_1141808832_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1141808832_a.pdb or /var/tmp/from_scwrl_1141808832_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1141808832.pdb or /var/tmp/from_scwrl_1141808832_b.pdb or /var/tmp/from_scwrl_1141808832_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1787717835.pdb -s /var/tmp/to_scwrl_1787717835.seq -o /var/tmp/from_scwrl_1787717835.pdb > /var/tmp/scwrl_1787717835.log Error: Couldn't open file /var/tmp/from_scwrl_1787717835.pdb or /var/tmp/from_scwrl_1787717835.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1787717835_b.pdb or decoys//var/tmp/from_scwrl_1787717835_b.pdb.gz for input Trying /var/tmp/from_scwrl_1787717835_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1787717835_b.pdb or /var/tmp/from_scwrl_1787717835_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1787717835_a.pdb or decoys//var/tmp/from_scwrl_1787717835_a.pdb.gz for input Trying /var/tmp/from_scwrl_1787717835_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1787717835_a.pdb or /var/tmp/from_scwrl_1787717835_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1787717835.pdb or /var/tmp/from_scwrl_1787717835_b.pdb or /var/tmp/from_scwrl_1787717835_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_583556907.pdb -s /var/tmp/to_scwrl_583556907.seq -o /var/tmp/from_scwrl_583556907.pdb > /var/tmp/scwrl_583556907.log Error: Couldn't open file /var/tmp/from_scwrl_583556907.pdb or /var/tmp/from_scwrl_583556907.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_583556907_b.pdb or decoys//var/tmp/from_scwrl_583556907_b.pdb.gz for input Trying /var/tmp/from_scwrl_583556907_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_583556907_b.pdb or /var/tmp/from_scwrl_583556907_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_583556907_a.pdb or decoys//var/tmp/from_scwrl_583556907_a.pdb.gz for input Trying /var/tmp/from_scwrl_583556907_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_583556907_a.pdb or /var/tmp/from_scwrl_583556907_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_583556907.pdb or /var/tmp/from_scwrl_583556907_b.pdb or /var/tmp/from_scwrl_583556907_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_912152972.pdb -s /var/tmp/to_scwrl_912152972.seq -o /var/tmp/from_scwrl_912152972.pdb > /var/tmp/scwrl_912152972.log Error: Couldn't open file /var/tmp/from_scwrl_912152972.pdb or /var/tmp/from_scwrl_912152972.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_912152972_b.pdb or decoys//var/tmp/from_scwrl_912152972_b.pdb.gz for input Trying /var/tmp/from_scwrl_912152972_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_912152972_b.pdb or /var/tmp/from_scwrl_912152972_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_912152972_a.pdb or decoys//var/tmp/from_scwrl_912152972_a.pdb.gz for input Trying /var/tmp/from_scwrl_912152972_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_912152972_a.pdb or /var/tmp/from_scwrl_912152972_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_912152972.pdb or /var/tmp/from_scwrl_912152972_b.pdb or /var/tmp/from_scwrl_912152972_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1493055451.pdb -s /var/tmp/to_scwrl_1493055451.seq -o /var/tmp/from_scwrl_1493055451.pdb > /var/tmp/scwrl_1493055451.log Error: Couldn't open file /var/tmp/from_scwrl_1493055451.pdb or /var/tmp/from_scwrl_1493055451.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1493055451_b.pdb or decoys//var/tmp/from_scwrl_1493055451_b.pdb.gz for input Trying /var/tmp/from_scwrl_1493055451_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1493055451_b.pdb or /var/tmp/from_scwrl_1493055451_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1493055451_a.pdb or decoys//var/tmp/from_scwrl_1493055451_a.pdb.gz for input Trying /var/tmp/from_scwrl_1493055451_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1493055451_a.pdb or /var/tmp/from_scwrl_1493055451_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1493055451.pdb or /var/tmp/from_scwrl_1493055451_b.pdb or /var/tmp/from_scwrl_1493055451_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_608755776.pdb -s /var/tmp/to_scwrl_608755776.seq -o /var/tmp/from_scwrl_608755776.pdb > /var/tmp/scwrl_608755776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_608755776.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_445711561.pdb -s /var/tmp/to_scwrl_445711561.seq -o /var/tmp/from_scwrl_445711561.pdb > /var/tmp/scwrl_445711561.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_445711561.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2124169795.pdb -s /var/tmp/to_scwrl_2124169795.seq -o /var/tmp/from_scwrl_2124169795.pdb > /var/tmp/scwrl_2124169795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124169795.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_27410090.pdb -s /var/tmp/to_scwrl_27410090.seq -o /var/tmp/from_scwrl_27410090.pdb > /var/tmp/scwrl_27410090.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27410090.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1852054757.pdb -s /var/tmp/to_scwrl_1852054757.seq -o /var/tmp/from_scwrl_1852054757.pdb > /var/tmp/scwrl_1852054757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1852054757.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1350713659.pdb -s /var/tmp/to_scwrl_1350713659.seq -o /var/tmp/from_scwrl_1350713659.pdb > /var/tmp/scwrl_1350713659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350713659.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1358369500.pdb -s /var/tmp/to_scwrl_1358369500.seq -o /var/tmp/from_scwrl_1358369500.pdb > /var/tmp/scwrl_1358369500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358369500.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_625850285.pdb -s /var/tmp/to_scwrl_625850285.seq -o /var/tmp/from_scwrl_625850285.pdb > /var/tmp/scwrl_625850285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_625850285.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_561419652.pdb -s /var/tmp/to_scwrl_561419652.seq -o /var/tmp/from_scwrl_561419652.pdb > /var/tmp/scwrl_561419652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561419652.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_155495974.pdb -s /var/tmp/to_scwrl_155495974.seq -o /var/tmp/from_scwrl_155495974.pdb > /var/tmp/scwrl_155495974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155495974.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_719626509.pdb -s /var/tmp/to_scwrl_719626509.seq -o /var/tmp/from_scwrl_719626509.pdb > /var/tmp/scwrl_719626509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719626509.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1266011365.pdb -s /var/tmp/to_scwrl_1266011365.seq -o /var/tmp/from_scwrl_1266011365.pdb > /var/tmp/scwrl_1266011365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1266011365.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_491992582.pdb -s /var/tmp/to_scwrl_491992582.seq -o /var/tmp/from_scwrl_491992582.pdb > /var/tmp/scwrl_491992582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_491992582.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1100985515.pdb -s /var/tmp/to_scwrl_1100985515.seq -o /var/tmp/from_scwrl_1100985515.pdb > /var/tmp/scwrl_1100985515.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100985515.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1312516608.pdb -s /var/tmp/to_scwrl_1312516608.seq -o /var/tmp/from_scwrl_1312516608.pdb > /var/tmp/scwrl_1312516608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312516608.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1420557653.pdb -s /var/tmp/to_scwrl_1420557653.seq -o /var/tmp/from_scwrl_1420557653.pdb > /var/tmp/scwrl_1420557653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420557653.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 25, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 27, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 121, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 123, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 449, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 451, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2119412273.pdb -s /var/tmp/to_scwrl_2119412273.seq -o /var/tmp/from_scwrl_2119412273.pdb > /var/tmp/scwrl_2119412273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2119412273.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1168128552.pdb -s /var/tmp/to_scwrl_1168128552.seq -o /var/tmp/from_scwrl_1168128552.pdb > /var/tmp/scwrl_1168128552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1168128552.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_62664643.pdb -s /var/tmp/to_scwrl_62664643.seq -o /var/tmp/from_scwrl_62664643.pdb > /var/tmp/scwrl_62664643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62664643.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_499925843.pdb -s /var/tmp/to_scwrl_499925843.seq -o /var/tmp/from_scwrl_499925843.pdb > /var/tmp/scwrl_499925843.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_499925843.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2030329161.pdb -s /var/tmp/to_scwrl_2030329161.seq -o /var/tmp/from_scwrl_2030329161.pdb > /var/tmp/scwrl_2030329161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2030329161.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 25, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 27, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 121, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 123, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 449, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 451, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1423242823.pdb -s /var/tmp/to_scwrl_1423242823.seq -o /var/tmp/from_scwrl_1423242823.pdb > /var/tmp/scwrl_1423242823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423242823.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1628185189.pdb -s /var/tmp/to_scwrl_1628185189.seq -o /var/tmp/from_scwrl_1628185189.pdb > /var/tmp/scwrl_1628185189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628185189.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1731231282.pdb -s /var/tmp/to_scwrl_1731231282.seq -o /var/tmp/from_scwrl_1731231282.pdb > /var/tmp/scwrl_1731231282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1731231282.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1566834691.pdb -s /var/tmp/to_scwrl_1566834691.seq -o /var/tmp/from_scwrl_1566834691.pdb > /var/tmp/scwrl_1566834691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566834691.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_390436593.pdb -s /var/tmp/to_scwrl_390436593.seq -o /var/tmp/from_scwrl_390436593.pdb > /var/tmp/scwrl_390436593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390436593.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_725556468.pdb -s /var/tmp/to_scwrl_725556468.seq -o /var/tmp/from_scwrl_725556468.pdb > /var/tmp/scwrl_725556468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_725556468.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1207068879.pdb -s /var/tmp/to_scwrl_1207068879.seq -o /var/tmp/from_scwrl_1207068879.pdb > /var/tmp/scwrl_1207068879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1207068879.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_973993501.pdb -s /var/tmp/to_scwrl_973993501.seq -o /var/tmp/from_scwrl_973993501.pdb > /var/tmp/scwrl_973993501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973993501.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1637709439.pdb -s /var/tmp/to_scwrl_1637709439.seq -o /var/tmp/from_scwrl_1637709439.pdb > /var/tmp/scwrl_1637709439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1637709439.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_552640684.pdb -s /var/tmp/to_scwrl_552640684.seq -o /var/tmp/from_scwrl_552640684.pdb > /var/tmp/scwrl_552640684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552640684.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1582749276.pdb -s /var/tmp/to_scwrl_1582749276.seq -o /var/tmp/from_scwrl_1582749276.pdb > /var/tmp/scwrl_1582749276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1582749276.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2083421001.pdb -s /var/tmp/to_scwrl_2083421001.seq -o /var/tmp/from_scwrl_2083421001.pdb > /var/tmp/scwrl_2083421001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083421001.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_529326833.pdb -s /var/tmp/to_scwrl_529326833.seq -o /var/tmp/from_scwrl_529326833.pdb > /var/tmp/scwrl_529326833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529326833.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1610159366.pdb -s /var/tmp/to_scwrl_1610159366.seq -o /var/tmp/from_scwrl_1610159366.pdb > /var/tmp/scwrl_1610159366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1610159366.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1787992111.pdb -s /var/tmp/to_scwrl_1787992111.seq -o /var/tmp/from_scwrl_1787992111.pdb > /var/tmp/scwrl_1787992111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787992111.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1880040492.pdb -s /var/tmp/to_scwrl_1880040492.seq -o /var/tmp/from_scwrl_1880040492.pdb > /var/tmp/scwrl_1880040492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1880040492.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_821045221.pdb -s /var/tmp/to_scwrl_821045221.seq -o /var/tmp/from_scwrl_821045221.pdb > /var/tmp/scwrl_821045221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821045221.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_266358750.pdb -s /var/tmp/to_scwrl_266358750.seq -o /var/tmp/from_scwrl_266358750.pdb > /var/tmp/scwrl_266358750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_266358750.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_293976497.pdb -s /var/tmp/to_scwrl_293976497.seq -o /var/tmp/from_scwrl_293976497.pdb > /var/tmp/scwrl_293976497.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_293976497.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_976541195.pdb -s /var/tmp/to_scwrl_976541195.seq -o /var/tmp/from_scwrl_976541195.pdb > /var/tmp/scwrl_976541195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976541195.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_985985259.pdb -s /var/tmp/to_scwrl_985985259.seq -o /var/tmp/from_scwrl_985985259.pdb > /var/tmp/scwrl_985985259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_985985259.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1559987862.pdb -s /var/tmp/to_scwrl_1559987862.seq -o /var/tmp/from_scwrl_1559987862.pdb > /var/tmp/scwrl_1559987862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559987862.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1468533777.pdb -s /var/tmp/to_scwrl_1468533777.seq -o /var/tmp/from_scwrl_1468533777.pdb > /var/tmp/scwrl_1468533777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1468533777.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2086970774.pdb -s /var/tmp/to_scwrl_2086970774.seq -o /var/tmp/from_scwrl_2086970774.pdb > /var/tmp/scwrl_2086970774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2086970774.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_725020825.pdb -s /var/tmp/to_scwrl_725020825.seq -o /var/tmp/from_scwrl_725020825.pdb > /var/tmp/scwrl_725020825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_725020825.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_741607784.pdb -s /var/tmp/to_scwrl_741607784.seq -o /var/tmp/from_scwrl_741607784.pdb > /var/tmp/scwrl_741607784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_741607784.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2058899400.pdb -s /var/tmp/to_scwrl_2058899400.seq -o /var/tmp/from_scwrl_2058899400.pdb > /var/tmp/scwrl_2058899400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2058899400.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1893149377.pdb -s /var/tmp/to_scwrl_1893149377.seq -o /var/tmp/from_scwrl_1893149377.pdb > /var/tmp/scwrl_1893149377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1893149377.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_804272427.pdb -s /var/tmp/to_scwrl_804272427.seq -o /var/tmp/from_scwrl_804272427.pdb > /var/tmp/scwrl_804272427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_804272427.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_411341597.pdb -s /var/tmp/to_scwrl_411341597.seq -o /var/tmp/from_scwrl_411341597.pdb > /var/tmp/scwrl_411341597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411341597.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1775994892.pdb -s /var/tmp/to_scwrl_1775994892.seq -o /var/tmp/from_scwrl_1775994892.pdb > /var/tmp/scwrl_1775994892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775994892.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_80031604.pdb -s /var/tmp/to_scwrl_80031604.seq -o /var/tmp/from_scwrl_80031604.pdb > /var/tmp/scwrl_80031604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80031604.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2039526786.pdb -s /var/tmp/to_scwrl_2039526786.seq -o /var/tmp/from_scwrl_2039526786.pdb > /var/tmp/scwrl_2039526786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2039526786.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1359742527.pdb -s /var/tmp/to_scwrl_1359742527.seq -o /var/tmp/from_scwrl_1359742527.pdb > /var/tmp/scwrl_1359742527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1359742527.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1646866295.pdb -s /var/tmp/to_scwrl_1646866295.seq -o /var/tmp/from_scwrl_1646866295.pdb > /var/tmp/scwrl_1646866295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1646866295.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_282479732.pdb -s /var/tmp/to_scwrl_282479732.seq -o /var/tmp/from_scwrl_282479732.pdb > /var/tmp/scwrl_282479732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_282479732.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2085298996.pdb -s /var/tmp/to_scwrl_2085298996.seq -o /var/tmp/from_scwrl_2085298996.pdb > /var/tmp/scwrl_2085298996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2085298996.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_706451529.pdb -s /var/tmp/to_scwrl_706451529.seq -o /var/tmp/from_scwrl_706451529.pdb > /var/tmp/scwrl_706451529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_706451529.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1256473232.pdb -s /var/tmp/to_scwrl_1256473232.seq -o /var/tmp/from_scwrl_1256473232.pdb > /var/tmp/scwrl_1256473232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1256473232.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1575524788.pdb -s /var/tmp/to_scwrl_1575524788.seq -o /var/tmp/from_scwrl_1575524788.pdb > /var/tmp/scwrl_1575524788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1575524788.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1259092212.pdb -s /var/tmp/to_scwrl_1259092212.seq -o /var/tmp/from_scwrl_1259092212.pdb > /var/tmp/scwrl_1259092212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259092212.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_691738863.pdb -s /var/tmp/to_scwrl_691738863.seq -o /var/tmp/from_scwrl_691738863.pdb > /var/tmp/scwrl_691738863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691738863.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1511462142.pdb -s /var/tmp/to_scwrl_1511462142.seq -o /var/tmp/from_scwrl_1511462142.pdb > /var/tmp/scwrl_1511462142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1511462142.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1788419045.pdb -s /var/tmp/to_scwrl_1788419045.seq -o /var/tmp/from_scwrl_1788419045.pdb > /var/tmp/scwrl_1788419045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1788419045.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_154414582.pdb -s /var/tmp/to_scwrl_154414582.seq -o /var/tmp/from_scwrl_154414582.pdb > /var/tmp/scwrl_154414582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_154414582.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1151970607.pdb -s /var/tmp/to_scwrl_1151970607.seq -o /var/tmp/from_scwrl_1151970607.pdb > /var/tmp/scwrl_1151970607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1151970607.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1520975891.pdb -s /var/tmp/to_scwrl_1520975891.seq -o /var/tmp/from_scwrl_1520975891.pdb > /var/tmp/scwrl_1520975891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1520975891.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_975459803.pdb -s /var/tmp/to_scwrl_975459803.seq -o /var/tmp/from_scwrl_975459803.pdb > /var/tmp/scwrl_975459803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_975459803.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1418329357.pdb -s /var/tmp/to_scwrl_1418329357.seq -o /var/tmp/from_scwrl_1418329357.pdb > /var/tmp/scwrl_1418329357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1418329357.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1814952388.pdb -s /var/tmp/to_scwrl_1814952388.seq -o /var/tmp/from_scwrl_1814952388.pdb > /var/tmp/scwrl_1814952388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814952388.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1952000998.pdb -s /var/tmp/to_scwrl_1952000998.seq -o /var/tmp/from_scwrl_1952000998.pdb > /var/tmp/scwrl_1952000998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1952000998.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_256830969.pdb -s /var/tmp/to_scwrl_256830969.seq -o /var/tmp/from_scwrl_256830969.pdb > /var/tmp/scwrl_256830969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_256830969.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1227456604.pdb -s /var/tmp/to_scwrl_1227456604.seq -o /var/tmp/from_scwrl_1227456604.pdb > /var/tmp/scwrl_1227456604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1227456604.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1273051128.pdb -s /var/tmp/to_scwrl_1273051128.seq -o /var/tmp/from_scwrl_1273051128.pdb > /var/tmp/scwrl_1273051128.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273051128.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_196318096.pdb -s /var/tmp/to_scwrl_196318096.seq -o /var/tmp/from_scwrl_196318096.pdb > /var/tmp/scwrl_196318096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_196318096.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1952477429.pdb -s /var/tmp/to_scwrl_1952477429.seq -o /var/tmp/from_scwrl_1952477429.pdb > /var/tmp/scwrl_1952477429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1952477429.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2014658912.pdb -s /var/tmp/to_scwrl_2014658912.seq -o /var/tmp/from_scwrl_2014658912.pdb > /var/tmp/scwrl_2014658912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2014658912.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 45 < previous residue 122 in servers/POMYSL_TS4.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_107733849.pdb -s /var/tmp/to_scwrl_107733849.seq -o /var/tmp/from_scwrl_107733849.pdb > /var/tmp/scwrl_107733849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107733849.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1698143159.pdb -s /var/tmp/to_scwrl_1698143159.seq -o /var/tmp/from_scwrl_1698143159.pdb > /var/tmp/scwrl_1698143159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1698143159.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_671447692.pdb -s /var/tmp/to_scwrl_671447692.seq -o /var/tmp/from_scwrl_671447692.pdb > /var/tmp/scwrl_671447692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_671447692.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_519075446.pdb -s /var/tmp/to_scwrl_519075446.seq -o /var/tmp/from_scwrl_519075446.pdb > /var/tmp/scwrl_519075446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_519075446.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1326654404.pdb -s /var/tmp/to_scwrl_1326654404.seq -o /var/tmp/from_scwrl_1326654404.pdb > /var/tmp/scwrl_1326654404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1326654404.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_751479296.pdb -s /var/tmp/to_scwrl_751479296.seq -o /var/tmp/from_scwrl_751479296.pdb > /var/tmp/scwrl_751479296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_751479296.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_411118585.pdb -s /var/tmp/to_scwrl_411118585.seq -o /var/tmp/from_scwrl_411118585.pdb > /var/tmp/scwrl_411118585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411118585.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_538913286.pdb -s /var/tmp/to_scwrl_538913286.seq -o /var/tmp/from_scwrl_538913286.pdb > /var/tmp/scwrl_538913286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_538913286.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_250861945.pdb -s /var/tmp/to_scwrl_250861945.seq -o /var/tmp/from_scwrl_250861945.pdb > /var/tmp/scwrl_250861945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_250861945.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_693598318.pdb -s /var/tmp/to_scwrl_693598318.seq -o /var/tmp/from_scwrl_693598318.pdb > /var/tmp/scwrl_693598318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_693598318.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_476728635.pdb -s /var/tmp/to_scwrl_476728635.seq -o /var/tmp/from_scwrl_476728635.pdb > /var/tmp/scwrl_476728635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_476728635.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_957313474.pdb -s /var/tmp/to_scwrl_957313474.seq -o /var/tmp/from_scwrl_957313474.pdb > /var/tmp/scwrl_957313474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957313474.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1950071550.pdb -s /var/tmp/to_scwrl_1950071550.seq -o /var/tmp/from_scwrl_1950071550.pdb > /var/tmp/scwrl_1950071550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1950071550.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2052253423.pdb -s /var/tmp/to_scwrl_2052253423.seq -o /var/tmp/from_scwrl_2052253423.pdb > /var/tmp/scwrl_2052253423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2052253423.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_68922039.pdb -s /var/tmp/to_scwrl_68922039.seq -o /var/tmp/from_scwrl_68922039.pdb > /var/tmp/scwrl_68922039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_68922039.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_494326766.pdb -s /var/tmp/to_scwrl_494326766.seq -o /var/tmp/from_scwrl_494326766.pdb > /var/tmp/scwrl_494326766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_494326766.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1416231919.pdb -s /var/tmp/to_scwrl_1416231919.seq -o /var/tmp/from_scwrl_1416231919.pdb > /var/tmp/scwrl_1416231919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416231919.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1857341085.pdb -s /var/tmp/to_scwrl_1857341085.seq -o /var/tmp/from_scwrl_1857341085.pdb > /var/tmp/scwrl_1857341085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857341085.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_648741349.pdb -s /var/tmp/to_scwrl_648741349.seq -o /var/tmp/from_scwrl_648741349.pdb > /var/tmp/scwrl_648741349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_648741349.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_420718880.pdb -s /var/tmp/to_scwrl_420718880.seq -o /var/tmp/from_scwrl_420718880.pdb > /var/tmp/scwrl_420718880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_420718880.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1230833329.pdb -s /var/tmp/to_scwrl_1230833329.seq -o /var/tmp/from_scwrl_1230833329.pdb > /var/tmp/scwrl_1230833329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1230833329.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1624201151.pdb -s /var/tmp/to_scwrl_1624201151.seq -o /var/tmp/from_scwrl_1624201151.pdb > /var/tmp/scwrl_1624201151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1624201151.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1839048237.pdb -s /var/tmp/to_scwrl_1839048237.seq -o /var/tmp/from_scwrl_1839048237.pdb > /var/tmp/scwrl_1839048237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1839048237.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_898302071.pdb -s /var/tmp/to_scwrl_898302071.seq -o /var/tmp/from_scwrl_898302071.pdb > /var/tmp/scwrl_898302071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_898302071.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1428718502.pdb -s /var/tmp/to_scwrl_1428718502.seq -o /var/tmp/from_scwrl_1428718502.pdb > /var/tmp/scwrl_1428718502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1428718502.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2095879206.pdb -s /var/tmp/to_scwrl_2095879206.seq -o /var/tmp/from_scwrl_2095879206.pdb > /var/tmp/scwrl_2095879206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2095879206.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2125758675.pdb -s /var/tmp/to_scwrl_2125758675.seq -o /var/tmp/from_scwrl_2125758675.pdb > /var/tmp/scwrl_2125758675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125758675.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_554285984.pdb -s /var/tmp/to_scwrl_554285984.seq -o /var/tmp/from_scwrl_554285984.pdb > /var/tmp/scwrl_554285984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554285984.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_144713655.pdb -s /var/tmp/to_scwrl_144713655.seq -o /var/tmp/from_scwrl_144713655.pdb > /var/tmp/scwrl_144713655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_144713655.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1930752457.pdb -s /var/tmp/to_scwrl_1930752457.seq -o /var/tmp/from_scwrl_1930752457.pdb > /var/tmp/scwrl_1930752457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1930752457.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_421461249.pdb -s /var/tmp/to_scwrl_421461249.seq -o /var/tmp/from_scwrl_421461249.pdb > /var/tmp/scwrl_421461249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_421461249.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_252447504.pdb -s /var/tmp/to_scwrl_252447504.seq -o /var/tmp/from_scwrl_252447504.pdb > /var/tmp/scwrl_252447504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252447504.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1481411970.pdb -s /var/tmp/to_scwrl_1481411970.seq -o /var/tmp/from_scwrl_1481411970.pdb > /var/tmp/scwrl_1481411970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481411970.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1092908941.pdb -s /var/tmp/to_scwrl_1092908941.seq -o /var/tmp/from_scwrl_1092908941.pdb > /var/tmp/scwrl_1092908941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1092908941.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_771522951.pdb -s /var/tmp/to_scwrl_771522951.seq -o /var/tmp/from_scwrl_771522951.pdb > /var/tmp/scwrl_771522951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_771522951.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_660582728.pdb -s /var/tmp/to_scwrl_660582728.seq -o /var/tmp/from_scwrl_660582728.pdb > /var/tmp/scwrl_660582728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660582728.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1844388237.pdb -s /var/tmp/to_scwrl_1844388237.seq -o /var/tmp/from_scwrl_1844388237.pdb > /var/tmp/scwrl_1844388237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844388237.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1182641535.pdb -s /var/tmp/to_scwrl_1182641535.seq -o /var/tmp/from_scwrl_1182641535.pdb > /var/tmp/scwrl_1182641535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1182641535.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1199496013.pdb -s /var/tmp/to_scwrl_1199496013.seq -o /var/tmp/from_scwrl_1199496013.pdb > /var/tmp/scwrl_1199496013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199496013.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2095250182.pdb -s /var/tmp/to_scwrl_2095250182.seq -o /var/tmp/from_scwrl_2095250182.pdb > /var/tmp/scwrl_2095250182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2095250182.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1876239853.pdb -s /var/tmp/to_scwrl_1876239853.seq -o /var/tmp/from_scwrl_1876239853.pdb > /var/tmp/scwrl_1876239853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1876239853.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1676224648.pdb -s /var/tmp/to_scwrl_1676224648.seq -o /var/tmp/from_scwrl_1676224648.pdb > /var/tmp/scwrl_1676224648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676224648.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_905080009.pdb -s /var/tmp/to_scwrl_905080009.seq -o /var/tmp/from_scwrl_905080009.pdb > /var/tmp/scwrl_905080009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_905080009.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1678827757.pdb -s /var/tmp/to_scwrl_1678827757.seq -o /var/tmp/from_scwrl_1678827757.pdb > /var/tmp/scwrl_1678827757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1678827757.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1580994425.pdb -s /var/tmp/to_scwrl_1580994425.seq -o /var/tmp/from_scwrl_1580994425.pdb > /var/tmp/scwrl_1580994425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1580994425.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_974002049.pdb -s /var/tmp/to_scwrl_974002049.seq -o /var/tmp/from_scwrl_974002049.pdb > /var/tmp/scwrl_974002049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_974002049.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_25670876.pdb -s /var/tmp/to_scwrl_25670876.seq -o /var/tmp/from_scwrl_25670876.pdb > /var/tmp/scwrl_25670876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25670876.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_849742698.pdb -s /var/tmp/to_scwrl_849742698.seq -o /var/tmp/from_scwrl_849742698.pdb > /var/tmp/scwrl_849742698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_849742698.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_683859487.pdb -s /var/tmp/to_scwrl_683859487.seq -o /var/tmp/from_scwrl_683859487.pdb > /var/tmp/scwrl_683859487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_683859487.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_674412225.pdb -s /var/tmp/to_scwrl_674412225.seq -o /var/tmp/from_scwrl_674412225.pdb > /var/tmp/scwrl_674412225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_674412225.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1270461577.pdb -s /var/tmp/to_scwrl_1270461577.seq -o /var/tmp/from_scwrl_1270461577.pdb > /var/tmp/scwrl_1270461577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1270461577.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1914692816.pdb -s /var/tmp/to_scwrl_1914692816.seq -o /var/tmp/from_scwrl_1914692816.pdb > /var/tmp/scwrl_1914692816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914692816.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_151129730.pdb -s /var/tmp/to_scwrl_151129730.seq -o /var/tmp/from_scwrl_151129730.pdb > /var/tmp/scwrl_151129730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151129730.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_962026168.pdb -s /var/tmp/to_scwrl_962026168.seq -o /var/tmp/from_scwrl_962026168.pdb > /var/tmp/scwrl_962026168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962026168.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_665511240.pdb -s /var/tmp/to_scwrl_665511240.seq -o /var/tmp/from_scwrl_665511240.pdb > /var/tmp/scwrl_665511240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_665511240.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1579848232.pdb -s /var/tmp/to_scwrl_1579848232.seq -o /var/tmp/from_scwrl_1579848232.pdb > /var/tmp/scwrl_1579848232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1579848232.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_910421727.pdb -s /var/tmp/to_scwrl_910421727.seq -o /var/tmp/from_scwrl_910421727.pdb > /var/tmp/scwrl_910421727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_910421727.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_643786269.pdb -s /var/tmp/to_scwrl_643786269.seq -o /var/tmp/from_scwrl_643786269.pdb > /var/tmp/scwrl_643786269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_643786269.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2134134217.pdb -s /var/tmp/to_scwrl_2134134217.seq -o /var/tmp/from_scwrl_2134134217.pdb > /var/tmp/scwrl_2134134217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2134134217.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1055135382.pdb -s /var/tmp/to_scwrl_1055135382.seq -o /var/tmp/from_scwrl_1055135382.pdb > /var/tmp/scwrl_1055135382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1055135382.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_427055079.pdb -s /var/tmp/to_scwrl_427055079.seq -o /var/tmp/from_scwrl_427055079.pdb > /var/tmp/scwrl_427055079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_427055079.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_408111819.pdb -s /var/tmp/to_scwrl_408111819.seq -o /var/tmp/from_scwrl_408111819.pdb > /var/tmp/scwrl_408111819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408111819.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1307582885.pdb -s /var/tmp/to_scwrl_1307582885.seq -o /var/tmp/from_scwrl_1307582885.pdb > /var/tmp/scwrl_1307582885.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307582885.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1908467049.pdb -s /var/tmp/to_scwrl_1908467049.seq -o /var/tmp/from_scwrl_1908467049.pdb > /var/tmp/scwrl_1908467049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908467049.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1501020760.pdb -s /var/tmp/to_scwrl_1501020760.seq -o /var/tmp/from_scwrl_1501020760.pdb > /var/tmp/scwrl_1501020760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501020760.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2079105836.pdb -s /var/tmp/to_scwrl_2079105836.seq -o /var/tmp/from_scwrl_2079105836.pdb > /var/tmp/scwrl_2079105836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079105836.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_421566131.pdb -s /var/tmp/to_scwrl_421566131.seq -o /var/tmp/from_scwrl_421566131.pdb > /var/tmp/scwrl_421566131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_421566131.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1197925351.pdb -s /var/tmp/to_scwrl_1197925351.seq -o /var/tmp/from_scwrl_1197925351.pdb > /var/tmp/scwrl_1197925351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1197925351.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1114263725.pdb -s /var/tmp/to_scwrl_1114263725.seq -o /var/tmp/from_scwrl_1114263725.pdb > /var/tmp/scwrl_1114263725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114263725.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1621062144.pdb -s /var/tmp/to_scwrl_1621062144.seq -o /var/tmp/from_scwrl_1621062144.pdb > /var/tmp/scwrl_1621062144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621062144.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1145691886.pdb -s /var/tmp/to_scwrl_1145691886.seq -o /var/tmp/from_scwrl_1145691886.pdb > /var/tmp/scwrl_1145691886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1145691886.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_843019932.pdb -s /var/tmp/to_scwrl_843019932.seq -o /var/tmp/from_scwrl_843019932.pdb > /var/tmp/scwrl_843019932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843019932.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1149803146.pdb -s /var/tmp/to_scwrl_1149803146.seq -o /var/tmp/from_scwrl_1149803146.pdb > /var/tmp/scwrl_1149803146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1149803146.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2050771896.pdb -s /var/tmp/to_scwrl_2050771896.seq -o /var/tmp/from_scwrl_2050771896.pdb > /var/tmp/scwrl_2050771896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2050771896.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_374364042.pdb -s /var/tmp/to_scwrl_374364042.seq -o /var/tmp/from_scwrl_374364042.pdb > /var/tmp/scwrl_374364042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_374364042.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_583313925.pdb -s /var/tmp/to_scwrl_583313925.seq -o /var/tmp/from_scwrl_583313925.pdb > /var/tmp/scwrl_583313925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583313925.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_877290298.pdb -s /var/tmp/to_scwrl_877290298.seq -o /var/tmp/from_scwrl_877290298.pdb > /var/tmp/scwrl_877290298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877290298.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_400034919.pdb -s /var/tmp/to_scwrl_400034919.seq -o /var/tmp/from_scwrl_400034919.pdb > /var/tmp/scwrl_400034919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_400034919.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1433056622.pdb -s /var/tmp/to_scwrl_1433056622.seq -o /var/tmp/from_scwrl_1433056622.pdb > /var/tmp/scwrl_1433056622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433056622.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1561149784.pdb -s /var/tmp/to_scwrl_1561149784.seq -o /var/tmp/from_scwrl_1561149784.pdb > /var/tmp/scwrl_1561149784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1561149784.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1074447143.pdb -s /var/tmp/to_scwrl_1074447143.seq -o /var/tmp/from_scwrl_1074447143.pdb > /var/tmp/scwrl_1074447143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074447143.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_556034553.pdb -s /var/tmp/to_scwrl_556034553.seq -o /var/tmp/from_scwrl_556034553.pdb > /var/tmp/scwrl_556034553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_556034553.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1328358953.pdb -s /var/tmp/to_scwrl_1328358953.seq -o /var/tmp/from_scwrl_1328358953.pdb > /var/tmp/scwrl_1328358953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328358953.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)C99.CA and (T0304)L104.CA only 0.000 apart, marking (T0304)L104.CA as missing WARNING: atoms too close: (T0304)K100.CA and (T0304)S105.CA only 0.000 apart, marking (T0304)S105.CA as missing WARNING: atoms too close: (T0304)A101.CA and (T0304)S106.CA only 0.000 apart, marking (T0304)S106.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1225576873.pdb -s /var/tmp/to_scwrl_1225576873.seq -o /var/tmp/from_scwrl_1225576873.pdb > /var/tmp/scwrl_1225576873.log Error: Couldn't open file /var/tmp/from_scwrl_1225576873.pdb or /var/tmp/from_scwrl_1225576873.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1225576873_b.pdb or decoys//var/tmp/from_scwrl_1225576873_b.pdb.gz for input Trying /var/tmp/from_scwrl_1225576873_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1225576873_b.pdb or /var/tmp/from_scwrl_1225576873_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1225576873_a.pdb or decoys//var/tmp/from_scwrl_1225576873_a.pdb.gz for input Trying /var/tmp/from_scwrl_1225576873_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1225576873_a.pdb or /var/tmp/from_scwrl_1225576873_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1225576873.pdb or /var/tmp/from_scwrl_1225576873_b.pdb or /var/tmp/from_scwrl_1225576873_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1518060720.pdb -s /var/tmp/to_scwrl_1518060720.seq -o /var/tmp/from_scwrl_1518060720.pdb > /var/tmp/scwrl_1518060720.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518060720.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1993870193.pdb -s /var/tmp/to_scwrl_1993870193.seq -o /var/tmp/from_scwrl_1993870193.pdb > /var/tmp/scwrl_1993870193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993870193.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_657941460.pdb -s /var/tmp/to_scwrl_657941460.seq -o /var/tmp/from_scwrl_657941460.pdb > /var/tmp/scwrl_657941460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_657941460.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_280998800.pdb -s /var/tmp/to_scwrl_280998800.seq -o /var/tmp/from_scwrl_280998800.pdb > /var/tmp/scwrl_280998800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280998800.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_490172815.pdb -s /var/tmp/to_scwrl_490172815.seq -o /var/tmp/from_scwrl_490172815.pdb > /var/tmp/scwrl_490172815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_490172815.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_644592030.pdb -s /var/tmp/to_scwrl_644592030.seq -o /var/tmp/from_scwrl_644592030.pdb > /var/tmp/scwrl_644592030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_644592030.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1336134181.pdb -s /var/tmp/to_scwrl_1336134181.seq -o /var/tmp/from_scwrl_1336134181.pdb > /var/tmp/scwrl_1336134181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1336134181.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_917227895.pdb -s /var/tmp/to_scwrl_917227895.seq -o /var/tmp/from_scwrl_917227895.pdb > /var/tmp/scwrl_917227895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_917227895.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1052703849.pdb -s /var/tmp/to_scwrl_1052703849.seq -o /var/tmp/from_scwrl_1052703849.pdb > /var/tmp/scwrl_1052703849.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052703849.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_496233420.pdb -s /var/tmp/to_scwrl_496233420.seq -o /var/tmp/from_scwrl_496233420.pdb > /var/tmp/scwrl_496233420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_496233420.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_678211297.pdb -s /var/tmp/to_scwrl_678211297.seq -o /var/tmp/from_scwrl_678211297.pdb > /var/tmp/scwrl_678211297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678211297.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_406240963.pdb -s /var/tmp/to_scwrl_406240963.seq -o /var/tmp/from_scwrl_406240963.pdb > /var/tmp/scwrl_406240963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_406240963.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_427855610.pdb -s /var/tmp/to_scwrl_427855610.seq -o /var/tmp/from_scwrl_427855610.pdb > /var/tmp/scwrl_427855610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_427855610.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1099777427.pdb -s /var/tmp/to_scwrl_1099777427.seq -o /var/tmp/from_scwrl_1099777427.pdb > /var/tmp/scwrl_1099777427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1099777427.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1604166314.pdb -s /var/tmp/to_scwrl_1604166314.seq -o /var/tmp/from_scwrl_1604166314.pdb > /var/tmp/scwrl_1604166314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1604166314.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1542119335.pdb -s /var/tmp/to_scwrl_1542119335.seq -o /var/tmp/from_scwrl_1542119335.pdb > /var/tmp/scwrl_1542119335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1542119335.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_573355926.pdb -s /var/tmp/to_scwrl_573355926.seq -o /var/tmp/from_scwrl_573355926.pdb > /var/tmp/scwrl_573355926.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573355926.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_602374554.pdb -s /var/tmp/to_scwrl_602374554.seq -o /var/tmp/from_scwrl_602374554.pdb > /var/tmp/scwrl_602374554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602374554.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_237655620.pdb -s /var/tmp/to_scwrl_237655620.seq -o /var/tmp/from_scwrl_237655620.pdb > /var/tmp/scwrl_237655620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_237655620.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1723159072.pdb -s /var/tmp/to_scwrl_1723159072.seq -o /var/tmp/from_scwrl_1723159072.pdb > /var/tmp/scwrl_1723159072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1723159072.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_505662803.pdb -s /var/tmp/to_scwrl_505662803.seq -o /var/tmp/from_scwrl_505662803.pdb > /var/tmp/scwrl_505662803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_505662803.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_612019663.pdb -s /var/tmp/to_scwrl_612019663.seq -o /var/tmp/from_scwrl_612019663.pdb > /var/tmp/scwrl_612019663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612019663.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)P6.O and (T0304)G7.N only 0.000 apart, marking (T0304)G7.N as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_158989350.pdb -s /var/tmp/to_scwrl_158989350.seq -o /var/tmp/from_scwrl_158989350.pdb > /var/tmp/scwrl_158989350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_158989350.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1382953100.pdb -s /var/tmp/to_scwrl_1382953100.seq -o /var/tmp/from_scwrl_1382953100.pdb > /var/tmp/scwrl_1382953100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382953100.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1012054582.pdb -s /var/tmp/to_scwrl_1012054582.seq -o /var/tmp/from_scwrl_1012054582.pdb > /var/tmp/scwrl_1012054582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1012054582.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1592045972.pdb -s /var/tmp/to_scwrl_1592045972.seq -o /var/tmp/from_scwrl_1592045972.pdb > /var/tmp/scwrl_1592045972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1592045972.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)C24.O and (T0304)T25.N only 0.000 apart, marking (T0304)T25.N as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_796619238.pdb -s /var/tmp/to_scwrl_796619238.seq -o /var/tmp/from_scwrl_796619238.pdb > /var/tmp/scwrl_796619238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796619238.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2086501725.pdb -s /var/tmp/to_scwrl_2086501725.seq -o /var/tmp/from_scwrl_2086501725.pdb > /var/tmp/scwrl_2086501725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2086501725.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_596878.pdb -s /var/tmp/to_scwrl_596878.seq -o /var/tmp/from_scwrl_596878.pdb > /var/tmp/scwrl_596878.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_596878.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2124978191.pdb -s /var/tmp/to_scwrl_2124978191.seq -o /var/tmp/from_scwrl_2124978191.pdb > /var/tmp/scwrl_2124978191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2124978191.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1164594952.pdb -s /var/tmp/to_scwrl_1164594952.seq -o /var/tmp/from_scwrl_1164594952.pdb > /var/tmp/scwrl_1164594952.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164594952.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1518657598.pdb -s /var/tmp/to_scwrl_1518657598.seq -o /var/tmp/from_scwrl_1518657598.pdb > /var/tmp/scwrl_1518657598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518657598.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1971364738.pdb -s /var/tmp/to_scwrl_1971364738.seq -o /var/tmp/from_scwrl_1971364738.pdb > /var/tmp/scwrl_1971364738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1971364738.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1822536412.pdb -s /var/tmp/to_scwrl_1822536412.seq -o /var/tmp/from_scwrl_1822536412.pdb > /var/tmp/scwrl_1822536412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1822536412.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1799656398.pdb -s /var/tmp/to_scwrl_1799656398.seq -o /var/tmp/from_scwrl_1799656398.pdb > /var/tmp/scwrl_1799656398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1799656398.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_314053906.pdb -s /var/tmp/to_scwrl_314053906.seq -o /var/tmp/from_scwrl_314053906.pdb > /var/tmp/scwrl_314053906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_314053906.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_319644795.pdb -s /var/tmp/to_scwrl_319644795.seq -o /var/tmp/from_scwrl_319644795.pdb > /var/tmp/scwrl_319644795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_319644795.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_988306933.pdb -s /var/tmp/to_scwrl_988306933.seq -o /var/tmp/from_scwrl_988306933.pdb > /var/tmp/scwrl_988306933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_988306933.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1231281800.pdb -s /var/tmp/to_scwrl_1231281800.seq -o /var/tmp/from_scwrl_1231281800.pdb > /var/tmp/scwrl_1231281800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1231281800.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1372348643.pdb -s /var/tmp/to_scwrl_1372348643.seq -o /var/tmp/from_scwrl_1372348643.pdb > /var/tmp/scwrl_1372348643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1372348643.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1484540352.pdb -s /var/tmp/to_scwrl_1484540352.seq -o /var/tmp/from_scwrl_1484540352.pdb > /var/tmp/scwrl_1484540352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1484540352.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1909493098.pdb -s /var/tmp/to_scwrl_1909493098.seq -o /var/tmp/from_scwrl_1909493098.pdb > /var/tmp/scwrl_1909493098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1909493098.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1778589606.pdb -s /var/tmp/to_scwrl_1778589606.seq -o /var/tmp/from_scwrl_1778589606.pdb > /var/tmp/scwrl_1778589606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1778589606.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1912395962.pdb -s /var/tmp/to_scwrl_1912395962.seq -o /var/tmp/from_scwrl_1912395962.pdb > /var/tmp/scwrl_1912395962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1912395962.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_861786879.pdb -s /var/tmp/to_scwrl_861786879.seq -o /var/tmp/from_scwrl_861786879.pdb > /var/tmp/scwrl_861786879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_861786879.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 38.1992 sec, elapsed time= 190.742 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 282.623 shub_TS1 costs 0 real_cost = 287.464 panther2_TS1-scwrl costs 0 real_cost = 436.162 panther2_TS1 costs 0 real_cost = 445.135 nFOLD_TS5-scwrl costs 0 real_cost = 362.354 nFOLD_TS5 costs 0 real_cost = 362.355 nFOLD_TS4-scwrl costs 0 real_cost = 340.661 nFOLD_TS4 costs 0 real_cost = 340.662 nFOLD_TS3-scwrl costs 0 real_cost = 317.471 nFOLD_TS3 costs 0 real_cost = 382.687 nFOLD_TS2-scwrl costs 0 real_cost = 294.613 nFOLD_TS2 costs 0 real_cost = 294.616 nFOLD_TS1-scwrl costs 0 real_cost = 330.994 nFOLD_TS1 costs 0 real_cost = 330.997 mGen-3D_TS1-scwrl costs 0 real_cost = 262.508 mGen-3D_TS1 costs 0 real_cost = 320.734 keasar-server_TS5-scwrl costs 0 real_cost = 303.405 keasar-server_TS5 costs 0 real_cost = 305.59 keasar-server_TS4-scwrl costs 0 real_cost = 307.016 keasar-server_TS4 costs 0 real_cost = 308.749 keasar-server_TS3-scwrl costs 0 real_cost = 326.39 keasar-server_TS3 costs 0 real_cost = 324.778 keasar-server_TS2-scwrl costs 0 real_cost = 266.274 keasar-server_TS2 costs 0 real_cost = 287.487 keasar-server_TS1-scwrl costs 0 real_cost = 325.244 keasar-server_TS1 costs 0 real_cost = 324.22 karypis.srv_TS5-scwrl costs 0 real_cost = 298.429 karypis.srv_TS5 costs 0 real_cost = 296.728 karypis.srv_TS4-scwrl costs 0 real_cost = 308.238 karypis.srv_TS4 costs 0 real_cost = 308.238 karypis.srv_TS3-scwrl costs 0 real_cost = 365.508 karypis.srv_TS3 costs 0 real_cost = 362.81 karypis.srv_TS2-scwrl costs 0 real_cost = 293.687 karypis.srv_TS2 costs 0 real_cost = 294.445 karypis.srv_TS1-scwrl costs 0 real_cost = 260.655 karypis.srv_TS1 costs 0 real_cost = 257.212 karypis.srv.4_TS5-scwrl costs 0 real_cost = 307.434 karypis.srv.4_TS5 costs 0 real_cost = 307.431 karypis.srv.4_TS4-scwrl costs 0 real_cost = 265.895 karypis.srv.4_TS4 costs 0 real_cost = 265.895 karypis.srv.4_TS3-scwrl costs 0 real_cost = 329.508 karypis.srv.4_TS3 costs 0 real_cost = 329.616 karypis.srv.4_TS2-scwrl costs 0 real_cost = 365.614 karypis.srv.4_TS2 costs 0 real_cost = 365.614 karypis.srv.4_TS1-scwrl costs 0 real_cost = 310.473 karypis.srv.4_TS1 costs 0 real_cost = 310.473 karypis.srv.2_TS5-scwrl costs 0 real_cost = 273.046 karypis.srv.2_TS5 costs 0 real_cost = 273.046 karypis.srv.2_TS4-scwrl costs 0 real_cost = 318.44 karypis.srv.2_TS4 costs 0 real_cost = 318.44 karypis.srv.2_TS3-scwrl costs 0 real_cost = 326.513 karypis.srv.2_TS3 costs 0 real_cost = 326.594 karypis.srv.2_TS2-scwrl costs 0 real_cost = 258.116 karypis.srv.2_TS2 costs 0 real_cost = 258.116 karypis.srv.2_TS1-scwrl costs 0 real_cost = 287.636 karypis.srv.2_TS1 costs 0 real_cost = 287.604 forecast-s_AL5-scwrl costs 0 real_cost = 439.189 forecast-s_AL5 costs 0 real_cost = 474.012 forecast-s_AL4-scwrl costs 0 real_cost = 451.212 forecast-s_AL4 costs 0 real_cost = 489.145 forecast-s_AL3-scwrl costs 0 real_cost = 298.629 forecast-s_AL3 costs 0 real_cost = 341.449 forecast-s_AL2-scwrl costs 0 real_cost = 433.89 forecast-s_AL2 costs 0 real_cost = 452.083 forecast-s_AL1-scwrl costs 0 real_cost = 449.41 forecast-s_AL1 costs 0 real_cost = 449.41 beautshotbase_TS1-scwrl costs 0 real_cost = 288.872 beautshotbase_TS1 costs 0 real_cost = 288.019 beautshot_TS1-scwrl costs 0 real_cost = 259.76 beautshot_TS1 costs 0 real_cost = 258.541 Zhang-Server_TS5-scwrl costs 0 real_cost = 169.113 Zhang-Server_TS5 costs 0 real_cost = 172.166 Zhang-Server_TS4-scwrl costs 0 real_cost = 118.581 Zhang-Server_TS4 costs 0 real_cost = 130.712 Zhang-Server_TS3-scwrl costs 0 real_cost = 115.847 Zhang-Server_TS3 costs 0 real_cost = 121.814 Zhang-Server_TS2-scwrl costs 0 real_cost = 96.7215 Zhang-Server_TS2 costs 0 real_cost = 101.493 Zhang-Server_TS1-scwrl costs 0 real_cost = 103.881 Zhang-Server_TS1 costs 0 real_cost = 102.211 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 367.949 UNI-EID_sfst_AL5 costs 0 real_cost = 403.386 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 377.714 UNI-EID_sfst_AL4 costs 0 real_cost = 408.176 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 327.54 UNI-EID_sfst_AL3 costs 0 real_cost = 342.351 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 327.38 UNI-EID_sfst_AL2 costs 0 real_cost = 344.977 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 380.114 UNI-EID_sfst_AL1 costs 0 real_cost = 421.644 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 389.854 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 451.994 UNI-EID_bnmx_TS5 costs 0 real_cost = 472.171 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 357.704 UNI-EID_bnmx_TS4 costs 0 real_cost = 418.463 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 314.611 UNI-EID_bnmx_TS3 costs 0 real_cost = 359.438 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 321.898 UNI-EID_bnmx_TS2 costs 0 real_cost = 345.749 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 374.834 UNI-EID_bnmx_TS1 costs 0 real_cost = 418.304 SPARKS2_TS5-scwrl costs 0 real_cost = 256.995 SPARKS2_TS5 costs 0 real_cost = 257.624 SPARKS2_TS4-scwrl costs 0 real_cost = 280.683 SPARKS2_TS4 costs 0 real_cost = 280.966 SPARKS2_TS3-scwrl costs 0 real_cost = 313.271 SPARKS2_TS3 costs 0 real_cost = 310.463 SPARKS2_TS2-scwrl costs 0 real_cost = 329.317 SPARKS2_TS2 costs 0 real_cost = 342.088 SPARKS2_TS1-scwrl costs 0 real_cost = 320.207 SPARKS2_TS1 costs 0 real_cost = 318.279 SP4_TS5-scwrl costs 0 real_cost = 215.991 SP4_TS5 costs 0 real_cost = 233.762 SP4_TS4-scwrl costs 0 real_cost = 228.309 SP4_TS4 costs 0 real_cost = 226.271 SP4_TS3-scwrl costs 0 real_cost = 252.188 SP4_TS3 costs 0 real_cost = 259.524 SP4_TS2-scwrl costs 0 real_cost = 280.438 SP4_TS2 costs 0 real_cost = 278.69 SP4_TS1-scwrl costs 0 real_cost = 239.123 SP4_TS1 costs 0 real_cost = 247.386 SP3_TS5-scwrl costs 0 real_cost = 253.546 SP3_TS5 costs 0 real_cost = 261.48 SP3_TS4-scwrl costs 0 real_cost = 247.201 SP3_TS4 costs 0 real_cost = 258.456 SP3_TS3-scwrl costs 0 real_cost = 244.039 SP3_TS3 costs 0 real_cost = 254.623 SP3_TS2-scwrl costs 0 real_cost = 280.438 SP3_TS2 costs 0 real_cost = 278.69 SP3_TS1-scwrl costs 0 real_cost = 260.421 SP3_TS1 costs 0 real_cost = 262.951 SAM_T06_server_TS5-scwrl costs 0 real_cost = 402.503 SAM_T06_server_TS5 costs 0 real_cost = 361.225 SAM_T06_server_TS4-scwrl costs 0 real_cost = 329.121 SAM_T06_server_TS4 costs 0 real_cost = 329.063 SAM_T06_server_TS3-scwrl costs 0 real_cost = 445.297 SAM_T06_server_TS3 costs 0 real_cost = 420.65 SAM_T06_server_TS2-scwrl costs 0 real_cost = 234.083 SAM_T06_server_TS2 costs 0 real_cost = 246.616 SAM_T06_server_TS1-scwrl costs 0 real_cost = 323.65 SAM_T06_server_TS1 costs 0 real_cost = 324.896 SAM-T02_AL5-scwrl costs 0 real_cost = 308.254 SAM-T02_AL5 costs 0 real_cost = 341.589 SAM-T02_AL4-scwrl costs 0 real_cost = 439.488 SAM-T02_AL4 costs 0 real_cost = 449.742 SAM-T02_AL3-scwrl costs 0 real_cost = 443.684 SAM-T02_AL3 costs 0 real_cost = 452.525 SAM-T02_AL2-scwrl costs 0 real_cost = 440.288 SAM-T02_AL2 costs 0 real_cost = 475.596 SAM-T02_AL1-scwrl costs 0 real_cost = 395.322 SAM-T02_AL1 costs 0 real_cost = 453.508 ROKKY_TS5-scwrl costs 0 real_cost = 147.3 ROKKY_TS5 costs 0 real_cost = 236.9 ROKKY_TS4-scwrl costs 0 real_cost = 181.099 ROKKY_TS4 costs 0 real_cost = 282.762 ROKKY_TS3-scwrl costs 0 real_cost = 188.91 ROKKY_TS3 costs 0 real_cost = 286.384 ROKKY_TS2-scwrl costs 0 real_cost = 181.127 ROKKY_TS2 costs 0 real_cost = 282.921 ROKKY_TS1-scwrl costs 0 real_cost = 213.472 ROKKY_TS1 costs 0 real_cost = 310.271 ROBETTA_TS5-scwrl costs 0 real_cost = 145.622 ROBETTA_TS5 costs 0 real_cost = 150.44 ROBETTA_TS4-scwrl costs 0 real_cost = 152.726 ROBETTA_TS4 costs 0 real_cost = 145.006 ROBETTA_TS3-scwrl costs 0 real_cost = 136.625 ROBETTA_TS3 costs 0 real_cost = 137.933 ROBETTA_TS2-scwrl costs 0 real_cost = 149.089 ROBETTA_TS2 costs 0 real_cost = 155.05 ROBETTA_TS1-scwrl costs 0 real_cost = 188.362 ROBETTA_TS1 costs 0 real_cost = 182.404 RAPTOR_TS5-scwrl costs 0 real_cost = 271.399 RAPTOR_TS5 costs 0 real_cost = 271.829 RAPTOR_TS4-scwrl costs 0 real_cost = 209.661 RAPTOR_TS4 costs 0 real_cost = 220.479 RAPTOR_TS3-scwrl costs 0 real_cost = 290.176 RAPTOR_TS3 costs 0 real_cost = 289.599 RAPTOR_TS2-scwrl costs 0 real_cost = 222.052 RAPTOR_TS2 costs 0 real_cost = 230.744 RAPTOR_TS1-scwrl costs 0 real_cost = 258.564 RAPTOR_TS1 costs 0 real_cost = 263.018 RAPTORESS_TS5-scwrl costs 0 real_cost = 305.396 RAPTORESS_TS5 costs 0 real_cost = 306.238 RAPTORESS_TS4-scwrl costs 0 real_cost = 281.12 RAPTORESS_TS4 costs 0 real_cost = 294.073 RAPTORESS_TS3-scwrl costs 0 real_cost = 295.706 RAPTORESS_TS3 costs 0 real_cost = 300.766 RAPTORESS_TS2-scwrl costs 0 real_cost = 224.896 RAPTORESS_TS2 costs 0 real_cost = 224.977 RAPTORESS_TS1-scwrl costs 0 real_cost = 262.265 RAPTORESS_TS1 costs 0 real_cost = 273.159 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 247.94 RAPTOR-ACE_TS5 costs 0 real_cost = 241.493 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 226.487 RAPTOR-ACE_TS4 costs 0 real_cost = 226.949 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 240.393 RAPTOR-ACE_TS3 costs 0 real_cost = 246.883 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 284.915 RAPTOR-ACE_TS2 costs 0 real_cost = 289.856 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 236.844 RAPTOR-ACE_TS1 costs 0 real_cost = 255.567 Pmodeller6_TS5-scwrl costs 0 real_cost = 152.726 Pmodeller6_TS5 costs 0 real_cost = 145.006 Pmodeller6_TS4-scwrl costs 0 real_cost = 165.891 Pmodeller6_TS4 costs 0 real_cost = 166.582 Pmodeller6_TS3-scwrl costs 0 real_cost = 136.625 Pmodeller6_TS3 costs 0 real_cost = 137.933 Pmodeller6_TS2-scwrl costs 0 real_cost = 149.089 Pmodeller6_TS2 costs 0 real_cost = 155.05 Pmodeller6_TS1-scwrl costs 0 real_cost = 154.786 Pmodeller6_TS1 costs 0 real_cost = 157.591 Phyre-2_TS5-scwrl costs 0 real_cost = 308.291 Phyre-2_TS5 costs 0 real_cost = 303.48 Phyre-2_TS4-scwrl costs 0 real_cost = 312.008 Phyre-2_TS4 costs 0 real_cost = 311.215 Phyre-2_TS3-scwrl costs 0 real_cost = 302.197 Phyre-2_TS3 costs 0 real_cost = 301.226 Phyre-2_TS2-scwrl costs 0 real_cost = 304.894 Phyre-2_TS2 costs 0 real_cost = 304.06 Phyre-2_TS1-scwrl costs 0 real_cost = 304.917 Phyre-2_TS1 costs 0 real_cost = 304.383 Phyre-1_TS1-scwrl costs 0 real_cost = 325.77 Phyre-1_TS1 costs 0 real_cost = 321.693 Pcons6_TS5-scwrl costs 0 real_cost = 256.79 Pcons6_TS5 costs 0 real_cost = 263.914 Pcons6_TS4-scwrl costs 0 real_cost = 154.786 Pcons6_TS4 costs 0 real_cost = 157.591 Pcons6_TS3-scwrl costs 0 real_cost = 229.257 Pcons6_TS3 costs 0 real_cost = 229.257 Pcons6_TS2-scwrl costs 0 real_cost = 247.875 Pcons6_TS2 costs 0 real_cost = 247.122 Pcons6_TS1-scwrl costs 0 real_cost = 229.579 Pcons6_TS1 costs 0 real_cost = 229.579 PROTINFO_TS5-scwrl costs 0 real_cost = 333.723 PROTINFO_TS5 costs 0 real_cost = 332.34 PROTINFO_TS4-scwrl costs 0 real_cost = 332.074 PROTINFO_TS4 costs 0 real_cost = 336.65 PROTINFO_TS3-scwrl costs 0 real_cost = 268.559 PROTINFO_TS3 costs 0 real_cost = 267.501 PROTINFO_TS2-scwrl costs 0 real_cost = 334.18 PROTINFO_TS2 costs 0 real_cost = 334.211 PROTINFO_TS1-scwrl costs 0 real_cost = 259.593 PROTINFO_TS1 costs 0 real_cost = 253.441 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 243.819 PROTINFO-AB_TS5 costs 0 real_cost = 254.959 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 222.273 PROTINFO-AB_TS4 costs 0 real_cost = 229.798 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 238.028 PROTINFO-AB_TS3 costs 0 real_cost = 266.463 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 295.195 PROTINFO-AB_TS2 costs 0 real_cost = 302.951 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 255.96 PROTINFO-AB_TS1 costs 0 real_cost = 270.71 POMYSL_TS5-scwrl costs 0 real_cost = 330.503 POMYSL_TS5 costs 0 real_cost = 331.53 POMYSL_TS4-scwrl costs 0 real_cost = 392.442 POMYSL_TS4 costs 0 real_cost = 388.924 POMYSL_TS3-scwrl costs 0 real_cost = 313.354 POMYSL_TS3 costs 0 real_cost = 315.012 POMYSL_TS2-scwrl costs 0 real_cost = 302.175 POMYSL_TS2 costs 0 real_cost = 304.166 POMYSL_TS1-scwrl costs 0 real_cost = 320.011 POMYSL_TS1 costs 0 real_cost = 324.042 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 330.994 NN_PUT_lab_TS1 costs 0 real_cost = 330.997 MetaTasser_TS5-scwrl costs 0 real_cost = 252.401 MetaTasser_TS5 costs 0 real_cost = 254.617 MetaTasser_TS4-scwrl costs 0 real_cost = 277.438 MetaTasser_TS4 costs 0 real_cost = 282.346 MetaTasser_TS3-scwrl costs 0 real_cost = 246.055 MetaTasser_TS3 costs 0 real_cost = 256.461 MetaTasser_TS2-scwrl costs 0 real_cost = 253.253 MetaTasser_TS2 costs 0 real_cost = 260.788 MetaTasser_TS1-scwrl costs 0 real_cost = 303.197 MetaTasser_TS1 costs 0 real_cost = 303.171 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 279.472 Ma-OPUS-server_TS5 costs 0 real_cost = 290.061 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 257.13 Ma-OPUS-server_TS4 costs 0 real_cost = 255.597 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 240.976 Ma-OPUS-server_TS3 costs 0 real_cost = 242.556 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 319.424 Ma-OPUS-server_TS2 costs 0 real_cost = 313.731 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 221.261 Ma-OPUS-server_TS1 costs 0 real_cost = 230.845 MIG_FROST_AL1-scwrl costs 0 real_cost = 365.616 MIG_FROST_AL1 costs 0 real_cost = 380.327 LOOPP_TS5-scwrl costs 0 real_cost = 292.927 LOOPP_TS5 costs 0 real_cost = 293.267 LOOPP_TS4-scwrl costs 0 real_cost = 294.188 LOOPP_TS4 costs 0 real_cost = 292.557 LOOPP_TS3-scwrl costs 0 real_cost = 228.362 LOOPP_TS3 costs 0 real_cost = 216.987 LOOPP_TS2-scwrl costs 0 real_cost = 291.007 LOOPP_TS2 costs 0 real_cost = 286.03 LOOPP_TS1-scwrl costs 0 real_cost = 318.523 LOOPP_TS1 costs 0 real_cost = 317.554 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 261.167 Huber-Torda-Server_TS5 costs 0 real_cost = 308.776 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 275.949 Huber-Torda-Server_TS4 costs 0 real_cost = 330.083 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 348.749 Huber-Torda-Server_TS3 costs 0 real_cost = 378.305 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 348.978 Huber-Torda-Server_TS2 costs 0 real_cost = 401.692 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 311.545 Huber-Torda-Server_TS1 costs 0 real_cost = 364.693 HHpred3_TS1-scwrl costs 0 real_cost = 314.333 HHpred3_TS1 costs 0 real_cost = 314.044 HHpred2_TS1-scwrl costs 0 real_cost = 235.073 HHpred2_TS1 costs 0 real_cost = 240.322 HHpred1_TS1-scwrl costs 0 real_cost = 315.76 HHpred1_TS1 costs 0 real_cost = 325.426 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 286.286 GeneSilicoMetaServer_TS5 costs 0 real_cost = 297.056 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 197.274 GeneSilicoMetaServer_TS4 costs 0 real_cost = 205.039 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 250.023 GeneSilicoMetaServer_TS3 costs 0 real_cost = 244.142 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 265.144 GeneSilicoMetaServer_TS2 costs 0 real_cost = 273.457 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = 241.946 GeneSilicoMetaServer_TS1 costs 0 real_cost = 241.942 FUNCTION_TS5-scwrl costs 0 real_cost = 293.649 FUNCTION_TS5 costs 0 real_cost = 297.105 FUNCTION_TS4-scwrl costs 0 real_cost = 237.431 FUNCTION_TS4 costs 0 real_cost = 235.736 FUNCTION_TS3-scwrl costs 0 real_cost = 257.628 FUNCTION_TS3 costs 0 real_cost = 261.208 FUNCTION_TS2-scwrl costs 0 real_cost = 302.683 FUNCTION_TS2 costs 0 real_cost = 302.925 FUNCTION_TS1-scwrl costs 0 real_cost = 312.011 FUNCTION_TS1 costs 0 real_cost = 316.913 FUGUE_AL5-scwrl costs 0 real_cost = 281.102 FUGUE_AL5 costs 0 real_cost = 368.963 FUGUE_AL4-scwrl costs 0 real_cost = 328.295 FUGUE_AL4 costs 0 real_cost = 381.519 FUGUE_AL3-scwrl costs 0 real_cost = 341.983 FUGUE_AL3 costs 0 real_cost = 419.076 FUGUE_AL2-scwrl costs 0 real_cost = 340.135 FUGUE_AL2 costs 0 real_cost = 340.135 FUGUE_AL1-scwrl costs 0 real_cost = 407.619 FUGUE_AL1 costs 0 real_cost = 407.619 FUGMOD_TS5-scwrl costs 0 real_cost = 273.931 FUGMOD_TS5 costs 0 real_cost = 270.85 FUGMOD_TS4-scwrl costs 0 real_cost = 286.459 FUGMOD_TS4 costs 0 real_cost = 286.403 FUGMOD_TS3-scwrl costs 0 real_cost = 309.614 FUGMOD_TS3 costs 0 real_cost = 308.758 FUGMOD_TS2-scwrl costs 0 real_cost = 229.543 FUGMOD_TS2 costs 0 real_cost = 230.853 FUGMOD_TS1-scwrl costs 0 real_cost = 308.487 FUGMOD_TS1 costs 0 real_cost = 312.885 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 302.387 FPSOLVER-SERVER_TS5 costs 0 real_cost = 302.879 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 318.601 FPSOLVER-SERVER_TS4 costs 0 real_cost = 318.682 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 323.156 FPSOLVER-SERVER_TS3 costs 0 real_cost = 322.905 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 233.134 FPSOLVER-SERVER_TS2 costs 0 real_cost = 234.283 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 314.202 FPSOLVER-SERVER_TS1 costs 0 real_cost = 317.127 FORTE2_AL5-scwrl costs 0 real_cost = 347.018 FORTE2_AL5 costs 0 real_cost = 433.633 FORTE2_AL4-scwrl costs 0 real_cost = 355.878 FORTE2_AL4 costs 0 real_cost = 444.682 FORTE2_AL3-scwrl costs 0 real_cost = 383.398 FORTE2_AL3 costs 0 real_cost = 383.398 FORTE2_AL2-scwrl costs 0 real_cost = 362.067 FORTE2_AL2 costs 0 real_cost = 454.8 FORTE2_AL1-scwrl costs 0 real_cost = 357.405 FORTE2_AL1 costs 0 real_cost = 438.537 FORTE1_AL5-scwrl costs 0 real_cost = 371.002 FORTE1_AL5 costs 0 real_cost = 465.857 FORTE1_AL4-scwrl costs 0 real_cost = 345.296 FORTE1_AL4 costs 0 real_cost = 432.109 FORTE1_AL3-scwrl costs 0 real_cost = 383.398 FORTE1_AL3 costs 0 real_cost = 383.398 FORTE1_AL2-scwrl costs 0 real_cost = 362.067 FORTE1_AL2 costs 0 real_cost = 454.8 FORTE1_AL1-scwrl costs 0 real_cost = 357.405 FORTE1_AL1 costs 0 real_cost = 438.537 FOLDpro_TS5-scwrl costs 0 real_cost = 301.806 FOLDpro_TS5 costs 0 real_cost = 304.111 FOLDpro_TS4-scwrl costs 0 real_cost = 296.2 FOLDpro_TS4 costs 0 real_cost = 294.96 FOLDpro_TS3-scwrl costs 0 real_cost = 323.577 FOLDpro_TS3 costs 0 real_cost = 329.37 FOLDpro_TS2-scwrl costs 0 real_cost = 313.745 FOLDpro_TS2 costs 0 real_cost = 311.493 FOLDpro_TS1-scwrl costs 0 real_cost = 268.11 FOLDpro_TS1 costs 0 real_cost = 270.199 FAMS_TS5-scwrl costs 0 real_cost = 225.394 FAMS_TS5 costs 0 real_cost = 233.066 FAMS_TS4-scwrl costs 0 real_cost = 249.753 FAMS_TS4 costs 0 real_cost = 251.278 FAMS_TS3-scwrl costs 0 real_cost = 253.687 FAMS_TS3 costs 0 real_cost = 258.49 FAMS_TS2-scwrl costs 0 real_cost = 302.683 FAMS_TS2 costs 0 real_cost = 302.925 FAMS_TS1-scwrl costs 0 real_cost = 271.092 FAMS_TS1 costs 0 real_cost = 277.093 FAMSD_TS5-scwrl costs 0 real_cost = 262.845 FAMSD_TS5 costs 0 real_cost = 269.058 FAMSD_TS4-scwrl costs 0 real_cost = 232.872 FAMSD_TS4 costs 0 real_cost = 231.24 FAMSD_TS3-scwrl costs 0 real_cost = 263.112 FAMSD_TS3 costs 0 real_cost = 258.317 FAMSD_TS2-scwrl costs 0 real_cost = 223.64 FAMSD_TS2 costs 0 real_cost = 223.257 FAMSD_TS1-scwrl costs 0 real_cost = 225.394 FAMSD_TS1 costs 0 real_cost = 233.066 Distill_TS5-scwrl costs 0 real_cost = 381.308 Distill_TS4-scwrl costs 0 real_cost = 365.843 Distill_TS3-scwrl costs 0 real_cost = 381.642 Distill_TS2-scwrl costs 0 real_cost = 371.699 Distill_TS1-scwrl costs 0 real_cost = 364.562 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 328.128 CaspIta-FOX_TS5 costs 0 real_cost = 327.162 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 295.048 CaspIta-FOX_TS4 costs 0 real_cost = 293.989 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 339.997 CaspIta-FOX_TS3 costs 0 real_cost = 339.302 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 287.632 CaspIta-FOX_TS2 costs 0 real_cost = 287.335 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 435.867 CaspIta-FOX_TS1 costs 0 real_cost = 434.584 CIRCLE_TS5-scwrl costs 0 real_cost = 271.092 CIRCLE_TS5 costs 0 real_cost = 277.093 CIRCLE_TS4-scwrl costs 0 real_cost = 253.687 CIRCLE_TS4 costs 0 real_cost = 258.49 CIRCLE_TS3-scwrl costs 0 real_cost = 225.394 CIRCLE_TS3 costs 0 real_cost = 233.066 CIRCLE_TS2-scwrl costs 0 real_cost = 225.465 CIRCLE_TS2 costs 0 real_cost = 239.69 CIRCLE_TS1-scwrl costs 0 real_cost = 249.753 CIRCLE_TS1 costs 0 real_cost = 251.278 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 192.327 Bilab-ENABLE_TS5 costs 0 real_cost = 192.341 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 229.218 Bilab-ENABLE_TS4 costs 0 real_cost = 229.72 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 221.198 Bilab-ENABLE_TS3 costs 0 real_cost = 221.173 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 212.109 Bilab-ENABLE_TS2 costs 0 real_cost = 212.109 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 179.3 Bilab-ENABLE_TS1 costs 0 real_cost = 179.95 BayesHH_TS1-scwrl costs 0 real_cost = 283.588 BayesHH_TS1 costs 0 real_cost = 275.547 ABIpro_TS5-scwrl costs 0 real_cost = 221.417 ABIpro_TS5 costs 0 real_cost = 221.417 ABIpro_TS4-scwrl costs 0 real_cost = 204.476 ABIpro_TS4 costs 0 real_cost = 206.53 ABIpro_TS3-scwrl costs 0 real_cost = 205.229 ABIpro_TS3 costs 0 real_cost = 205.229 ABIpro_TS2-scwrl costs 0 real_cost = 178.25 ABIpro_TS2 costs 0 real_cost = 178.245 ABIpro_TS1-scwrl costs 0 real_cost = 246.203 ABIpro_TS1 costs 0 real_cost = 243.155 3Dpro_TS5-scwrl costs 0 real_cost = 321.599 3Dpro_TS5 costs 0 real_cost = 334.663 3Dpro_TS4-scwrl costs 0 real_cost = 334.874 3Dpro_TS4 costs 0 real_cost = 342.988 3Dpro_TS3-scwrl costs 0 real_cost = 178.25 3Dpro_TS3 costs 0 real_cost = 178.245 3Dpro_TS2-scwrl costs 0 real_cost = 282.956 3Dpro_TS2 costs 0 real_cost = 285.357 3Dpro_TS1-scwrl costs 0 real_cost = 246.203 3Dpro_TS1 costs 0 real_cost = 243.155 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 381.058 3D-JIGSAW_TS5 costs 0 real_cost = 379.967 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 289.615 3D-JIGSAW_TS4 costs 0 real_cost = 292.713 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 294.357 3D-JIGSAW_TS3 costs 0 real_cost = 304.133 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 303.697 3D-JIGSAW_TS2 costs 0 real_cost = 302.653 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 314.516 3D-JIGSAW_TS1 costs 0 real_cost = 324.029 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 313.662 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 311.077 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 313.662 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 311.077 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 370.146 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 365.566 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 370.146 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 365.566 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 303.51 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 302.123 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 238.031 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 237.219 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 272.952 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 271.816 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 302.881 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 302.881 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 268.386 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 266.549 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 310.441 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 307.835 T0304.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 191.957 T0304.try9-opt2.pdb.gz costs 0 real_cost = 189.74 T0304.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 189.997 T0304.try9-opt1.pdb.gz costs 0 real_cost = 191.593 T0304.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 189.406 T0304.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 209.142 T0304.try8-opt2.pdb.gz costs 0 real_cost = 213.322 T0304.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 218.075 T0304.try8-opt1.pdb.gz costs 0 real_cost = 212.077 T0304.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 208.048 T0304.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 228.125 T0304.try7-opt2.pdb.gz costs 0 real_cost = 225.587 T0304.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 225.51 T0304.try7-opt1.pdb.gz costs 0 real_cost = 226.796 T0304.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 225.584 T0304.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 282.715 T0304.try6-opt2.pdb.gz costs 0 real_cost = 279.481 T0304.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 277.424 T0304.try6-opt1.pdb.gz costs 0 real_cost = 278.189 T0304.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 280.453 T0304.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 281.517 T0304.try5-opt2.pdb.gz costs 0 real_cost = 278.655 T0304.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 277.403 T0304.try5-opt1.pdb.gz costs 0 real_cost = 278.839 T0304.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 280.833 T0304.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 151.21 T0304.try4-opt2.pdb.gz costs 0 real_cost = 152.746 T0304.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 153.519 T0304.try4-opt1.pdb.gz costs 0 real_cost = 157.821 T0304.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 153.177 T0304.try35-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 319.167 T0304.try35-opt2.pdb.gz costs 0 real_cost = 317.04 T0304.try35-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 317.224 T0304.try35-opt2.gromacs0.pdb.gz costs 0 real_cost = 317.942 T0304.try35-opt1.pdb.gz costs 0 real_cost = 318.61 T0304.try35-opt1-scwrl.pdb.gz costs 0 real_cost = 319.207 T0304.try34-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 267.308 T0304.try34-opt2.pdb.gz costs 0 real_cost = 266.645 T0304.try34-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 262.431 T0304.try34-opt2.gromacs0.pdb.gz costs 0 real_cost = 261.918 T0304.try34-opt1.pdb.gz costs 0 real_cost = 265.5 T0304.try34-opt1-scwrl.pdb.gz costs 0 real_cost = 268.674 T0304.try33-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 189.358 T0304.try33-opt2.pdb.gz costs 0 real_cost = 185.699 T0304.try33-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 189.996 T0304.try33-opt2.gromacs0.pdb.gz costs 0 real_cost = 189.636 T0304.try33-opt1.pdb.gz costs 0 real_cost = 184.03 T0304.try33-opt1-scwrl.pdb.gz costs 0 real_cost = 186.267 T0304.try32-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 279.301 T0304.try32-opt2.pdb.gz costs 0 real_cost = 279.408 T0304.try32-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 281.638 T0304.try32-opt2.gromacs0.pdb.gz costs 0 real_cost = 282.803 T0304.try32-opt1.pdb.gz costs 0 real_cost = 278.759 T0304.try32-opt1-scwrl.pdb.gz costs 0 real_cost = 278.397 T0304.try31-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 255.508 T0304.try31-opt2.pdb.gz costs 0 real_cost = 255.313 T0304.try31-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 249.724 T0304.try31-opt2.gromacs0.pdb.gz costs 0 real_cost = 250.717 T0304.try31-opt1.pdb.gz costs 0 real_cost = 261.273 T0304.try31-opt1-scwrl.pdb.gz costs 0 real_cost = 260.17 T0304.try30-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 208.801 T0304.try30-opt2.pdb.gz costs 0 real_cost = 205.98 T0304.try30-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 206.769 T0304.try30-opt2.gromacs0.pdb.gz costs 0 real_cost = 201.911 T0304.try30-opt1.pdb.gz costs 0 real_cost = 200.915 T0304.try30-opt1-scwrl.pdb.gz costs 0 real_cost = 200.043 T0304.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 113.388 T0304.try3-opt2.pdb.gz costs 0 real_cost = 118.344 T0304.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 118.33 T0304.try3-opt1.pdb.gz costs 0 real_cost = 120.964 T0304.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 120.629 T0304.try29-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 239.182 T0304.try29-opt2.pdb.gz costs 0 real_cost = 239.491 T0304.try29-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 232.403 T0304.try29-opt2.gromacs0.pdb.gz costs 0 real_cost = 233.469 T0304.try29-opt1.pdb.gz costs 0 real_cost = 240.28 T0304.try29-opt1-scwrl.pdb.gz costs 0 real_cost = 239.854 T0304.try28-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 321.22 T0304.try28-opt2.pdb.gz costs 0 real_cost = 318.571 T0304.try28-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 316.797 T0304.try28-opt2.gromacs0.pdb.gz costs 0 real_cost = 315.929 T0304.try28-opt1.pdb.gz costs 0 real_cost = 319.311 T0304.try28-opt1-scwrl.pdb.gz costs 0 real_cost = 321.313 T0304.try27-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 249.347 T0304.try27-opt2.pdb.gz costs 0 real_cost = 252.698 T0304.try27-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 245.105 T0304.try27-opt2.gromacs0.pdb.gz costs 0 real_cost = 250.922 T0304.try27-opt1.pdb.gz costs 0 real_cost = 247.99 T0304.try27-opt1-scwrl.pdb.gz costs 0 real_cost = 246.21 T0304.try26-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 265.161 T0304.try26-opt2.pdb.gz costs 0 real_cost = 262.574 T0304.try26-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 264.694 T0304.try26-opt2.gromacs0.pdb.gz costs 0 real_cost = 262.314 T0304.try26-opt1.pdb.gz costs 0 real_cost = 261.42 T0304.try26-opt1-scwrl.pdb.gz costs 0 real_cost = 263.92 T0304.try25-opt2.pdb.gz costs 0 real_cost = 281.434 T0304.try25-opt2.gromacs0.pdb.gz costs 0 real_cost = 283.392 T0304.try25-opt1.pdb.gz costs 0 real_cost = 284.186 T0304.try25-opt1-scwrl.pdb.gz costs 0 real_cost = 283.729 T0304.try24-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 261.068 T0304.try24-opt2.pdb.gz costs 0 real_cost = 260.773 T0304.try24-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 260.365 T0304.try24-opt2.gromacs0.pdb.gz costs 0 real_cost = 260.845 T0304.try24-opt1.pdb.gz costs 0 real_cost = 259.655 T0304.try24-opt1-scwrl.pdb.gz costs 0 real_cost = 257.759 T0304.try23-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 267.147 T0304.try23-opt2.pdb.gz costs 0 real_cost = 263.763 T0304.try23-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 264.715 T0304.try23-opt2.gromacs0.pdb.gz costs 0 real_cost = 265.93 T0304.try23-opt1.pdb.gz costs 0 real_cost = 265.56 T0304.try23-opt1-scwrl.pdb.gz costs 0 real_cost = 267.957 T0304.try22-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 228.593 T0304.try22-opt2.pdb.gz costs 0 real_cost = 223.519 T0304.try22-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 233.215 T0304.try22-opt2.gromacs0.pdb.gz costs 0 real_cost = 227.383 T0304.try22-opt1.pdb.gz costs 0 real_cost = 227.263 T0304.try22-opt1-scwrl.pdb.gz costs 0 real_cost = 226.971 T0304.try21-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 242.159 T0304.try21-opt2.pdb.gz costs 0 real_cost = 238.887 T0304.try21-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 246.762 T0304.try21-opt2.gromacs0.pdb.gz costs 0 real_cost = 238.174 T0304.try21-opt1.pdb.gz costs 0 real_cost = 239.649 T0304.try21-opt1-scwrl.pdb.gz costs 0 real_cost = 245.657 T0304.try20-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 263.205 T0304.try20-opt2.pdb.gz costs 0 real_cost = 258.479 T0304.try20-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 264.808 T0304.try20-opt2.gromacs0.pdb.gz costs 0 real_cost = 261.478 T0304.try20-opt1.pdb.gz costs 0 real_cost = 257.563 T0304.try20-opt1-scwrl.pdb.gz costs 0 real_cost = 258.684 T0304.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 167.855 T0304.try2-opt2.pdb.gz costs 0 real_cost = 169.194 T0304.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 171.234 T0304.try2-opt1.pdb.gz costs 0 real_cost = 166.508 T0304.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 166.278 T0304.try19-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 209.319 T0304.try19-opt2.pdb.gz costs 0 real_cost = 208.412 T0304.try19-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 205.687 T0304.try19-opt2.gromacs0.pdb.gz costs 0 real_cost = 206.026 T0304.try19-opt1.pdb.gz costs 0 real_cost = 198.835 T0304.try19-opt1-scwrl.pdb.gz costs 0 real_cost = 200.273 T0304.try18-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 214.613 T0304.try18-opt2.pdb.gz costs 0 real_cost = 214.229 T0304.try18-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 220.361 T0304.try18-opt2.gromacs0.pdb.gz costs 0 real_cost = 220.21 T0304.try18-opt1.pdb.gz costs 0 real_cost = 213.508 T0304.try18-opt1-scwrl.pdb.gz costs 0 real_cost = 212.444 T0304.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 185.627 T0304.try17-opt2.pdb.gz costs 0 real_cost = 182.32 T0304.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 189.513 T0304.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 189.427 T0304.try17-opt1.pdb.gz costs 0 real_cost = 190 T0304.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 188.699 T0304.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 295.903 T0304.try16-opt2.pdb.gz costs 0 real_cost = 297.858 T0304.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 299.914 T0304.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 298.453 T0304.try16-opt1.pdb.gz costs 0 real_cost = 297.189 T0304.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 294.506 T0304.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 272.703 T0304.try14-opt2.pdb.gz costs 0 real_cost = 273.932 T0304.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 269.336 T0304.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 273.032 T0304.try14-opt1.pdb.gz costs 0 real_cost = 268.253 T0304.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 268.093 T0304.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 262.919 T0304.try13-opt2.pdb.gz costs 0 real_cost = 262.68 T0304.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 265.884 T0304.try13-opt1.pdb.gz costs 0 real_cost = 261.633 T0304.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 261.511 T0304.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 316.464 T0304.try12-opt2.pdb.gz costs 0 real_cost = 316.58 T0304.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 317.582 T0304.try12-opt1.pdb.gz costs 0 real_cost = 317.03 T0304.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 315.851 T0304.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 281.343 T0304.try11-opt2.pdb.gz costs 0 real_cost = 280.378 T0304.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 283.658 T0304.try11-opt1.pdb.gz costs 0 real_cost = 281.256 T0304.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 280.439 T0304.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 241.662 T0304.try10-opt2.pdb.gz costs 0 real_cost = 241.604 T0304.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 248.255 T0304.try10-opt1.pdb.gz costs 0 real_cost = 242.774 T0304.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 240.576 T0304.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 322.957 T0304.try1-opt2.pdb.gz costs 0 real_cost = 323.275 T0304.try1-opt1.pdb.gz costs 0 real_cost = 324.252 T0304.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 323.129 ../model5.ts-submitted costs 0 real_cost = 279.189 ../model4.ts-submitted costs 0 real_cost = 279.411 ../model3.ts-submitted costs 0 real_cost = 253.413 ../model2.ts-submitted costs 0 real_cost = 260.785 ../model1.ts-submitted costs 0 real_cost = 267.464 align5 costs 0 real_cost = 323.607 align4 costs 0 real_cost = 442.737 align3 costs 0 real_cost = 329.901 align2 costs 0 real_cost = 335.424 align1 costs 0 real_cost = 341.613 T0304.try1-opt2.pdb costs 0 real_cost = 323.275 model5-scwrl costs 0 real_cost = 281.064 model5.ts-submitted costs 0 real_cost = 279.189 model4-scwrl costs 0 real_cost = 278.839 model4.ts-submitted costs 0 real_cost = 279.411 model3-scwrl costs 0 real_cost = 252.274 model3.ts-submitted costs 0 real_cost = 253.413 model2-scwrl costs 0 real_cost = 258.273 model2.ts-submitted costs 0 real_cost = 260.785 model1-scwrl costs 0 real_cost = 267.936 model1.ts-submitted costs 0 real_cost = 267 2h28A costs 0 real_cost = -872.8 # command:CPU_time= 268.565 sec, elapsed time= 421.241 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0304/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h28A/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175179917 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.01709 sec, elapsed time= 6.06345 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.10207 sec, elapsed time= 6.15799 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0304 numbered 1 through 122 Created new target T0304 from T0304.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0304_1.real.pdb looking for model 1 Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.50471 sec, elapsed time= 8.57594 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -23.5149 # GDT_score(maxd=8,maxw=2.9)= -19.8891 # GDT_score(maxd=8,maxw=3.2)= -19.1383 # GDT_score(maxd=8,maxw=3.5)= -18.5163 # GDT_score(maxd=10,maxw=3.8)= -21.776 # GDT_score(maxd=10,maxw=4)= -21.2812 # GDT_score(maxd=10,maxw=4.2)= -20.8065 # GDT_score(maxd=12,maxw=4.3)= -24.2082 # GDT_score(maxd=12,maxw=4.5)= -23.6269 # GDT_score(maxd=12,maxw=4.7)= -23.085 # GDT_score(maxd=14,maxw=5.2)= -24.8838 # GDT_score(maxd=14,maxw=5.5)= -24.0793 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2030000e+03 rmsd (weighted)= 1.2332828e+01 (unweighted)= 4.0153175e+01 superimposing iter= 1 total_weight= 2.0254009e+03 rmsd (weighted)= 7.5858514e+00 (unweighted)= 4.0206857e+01 superimposing iter= 2 total_weight= 9.8163802e+02 rmsd (weighted)= 6.8149814e+00 (unweighted)= 4.0296499e+01 superimposing iter= 3 total_weight= 8.2962194e+02 rmsd (weighted)= 6.6689180e+00 (unweighted)= 4.0348735e+01 superimposing iter= 4 total_weight= 8.0718841e+02 rmsd (weighted)= 6.6171671e+00 (unweighted)= 4.0379756e+01 superimposing iter= 5 total_weight= 8.0143546e+02 rmsd (weighted)= 6.5894370e+00 (unweighted)= 4.0398501e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_367647939.pdb -s /var/tmp/to_scwrl_367647939.seq -o /var/tmp/from_scwrl_367647939.pdb > /var/tmp/scwrl_367647939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367647939.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -20.297 # GDT_score(maxd=8,maxw=2.9)= -18.3845 # GDT_score(maxd=8,maxw=3.2)= -17.6193 # GDT_score(maxd=8,maxw=3.5)= -16.8836 # GDT_score(maxd=10,maxw=3.8)= -19.2948 # GDT_score(maxd=10,maxw=4)= -18.7756 # GDT_score(maxd=10,maxw=4.2)= -18.3058 # GDT_score(maxd=12,maxw=4.3)= -21.2095 # GDT_score(maxd=12,maxw=4.5)= -20.6629 # GDT_score(maxd=12,maxw=4.7)= -20.1629 # GDT_score(maxd=14,maxw=5.2)= -21.8089 # GDT_score(maxd=14,maxw=5.5)= -21.0998 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1553066456.pdb -s /var/tmp/to_scwrl_1553066456.seq -o /var/tmp/from_scwrl_1553066456.pdb > /var/tmp/scwrl_1553066456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553066456.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -26.2376 # GDT_score(maxd=8,maxw=2.9)= -27.1199 # GDT_score(maxd=8,maxw=3.2)= -25.9493 # GDT_score(maxd=8,maxw=3.5)= -24.7871 # GDT_score(maxd=10,maxw=3.8)= -26.1932 # GDT_score(maxd=10,maxw=4)= -25.4301 # GDT_score(maxd=10,maxw=4.2)= -24.657 # GDT_score(maxd=12,maxw=4.3)= -26.6356 # GDT_score(maxd=12,maxw=4.5)= -25.8523 # GDT_score(maxd=12,maxw=4.7)= -25.1262 # GDT_score(maxd=14,maxw=5.2)= -25.6252 # GDT_score(maxd=14,maxw=5.5)= -24.6595 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1007066317.pdb -s /var/tmp/to_scwrl_1007066317.seq -o /var/tmp/from_scwrl_1007066317.pdb > /var/tmp/scwrl_1007066317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1007066317.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -17.5743 # GDT_score(maxd=8,maxw=2.9)= -14.7579 # GDT_score(maxd=8,maxw=3.2)= -14.2097 # GDT_score(maxd=8,maxw=3.5)= -13.7555 # GDT_score(maxd=10,maxw=3.8)= -16.5356 # GDT_score(maxd=10,maxw=4)= -16.1543 # GDT_score(maxd=10,maxw=4.2)= -15.7769 # GDT_score(maxd=12,maxw=4.3)= -18.6873 # GDT_score(maxd=12,maxw=4.5)= -18.2143 # GDT_score(maxd=12,maxw=4.7)= -17.7763 # GDT_score(maxd=14,maxw=5.2)= -19.448 # GDT_score(maxd=14,maxw=5.5)= -18.7652 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_128318342.pdb -s /var/tmp/to_scwrl_128318342.seq -o /var/tmp/from_scwrl_128318342.pdb > /var/tmp/scwrl_128318342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_128318342.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -25.9901 # GDT_score(maxd=8,maxw=2.9)= -24.5183 # GDT_score(maxd=8,maxw=3.2)= -23.1098 # GDT_score(maxd=8,maxw=3.5)= -21.7864 # GDT_score(maxd=10,maxw=3.8)= -24.8345 # GDT_score(maxd=10,maxw=4)= -23.9393 # GDT_score(maxd=10,maxw=4.2)= -23.1294 # GDT_score(maxd=12,maxw=4.3)= -26.243 # GDT_score(maxd=12,maxw=4.5)= -25.3846 # GDT_score(maxd=12,maxw=4.7)= -24.5994 # GDT_score(maxd=14,maxw=5.2)= -25.5534 # GDT_score(maxd=14,maxw=5.5)= -24.4852 # command:# request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1798510196.pdb -s /var/tmp/to_scwrl_1798510196.seq -o /var/tmp/from_scwrl_1798510196.pdb > /var/tmp/scwrl_1798510196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798510196.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0304.try1-opt2.pdb looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -17.0792 # GDT_score(maxd=8,maxw=2.9)= -15.7741 # GDT_score(maxd=8,maxw=3.2)= -15.0379 # GDT_score(maxd=8,maxw=3.5)= -14.4278 # GDT_score(maxd=10,maxw=3.8)= -16.1349 # GDT_score(maxd=10,maxw=4)= -15.7242 # GDT_score(maxd=10,maxw=4.2)= -15.3418 # GDT_score(maxd=12,maxw=4.3)= -17.2006 # GDT_score(maxd=12,maxw=4.5)= -16.77 # GDT_score(maxd=12,maxw=4.7)= -16.3513 # GDT_score(maxd=14,maxw=5.2)= -17.4186 # GDT_score(maxd=14,maxw=5.5)= -16.8423 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.2030000e+03 rmsd (weighted)= 1.5506126e+01 (unweighted)= 4.0929812e+01 superimposing iter= 1 total_weight= 1.6306001e+03 rmsd (weighted)= 1.0724662e+01 (unweighted)= 4.0788345e+01 superimposing iter= 2 total_weight= 9.1387415e+02 rmsd (weighted)= 9.9720254e+00 (unweighted)= 4.0699291e+01 superimposing iter= 3 total_weight= 8.3063253e+02 rmsd (weighted)= 9.7309170e+00 (unweighted)= 4.0655487e+01 superimposing iter= 4 total_weight= 8.2389340e+02 rmsd (weighted)= 9.5380440e+00 (unweighted)= 4.0642247e+01 superimposing iter= 5 total_weight= 8.2431006e+02 rmsd (weighted)= 9.3516504e+00 (unweighted)= 4.0652070e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0304)L77.C and (T0304)T78.C only 0.0000000e+00 apart, marking (T0304)T78.C as missing WARNING: atoms too close: (T0304)T78.N and (T0304)S79.N only 0.0000000e+00 apart, marking (T0304)T78.N as missing WARNING: atoms too close: (T0304)T78.CA and (T0304)S79.CA only 0.0000000e+00 apart, marking (T0304)T78.CA as missing WARNING: atoms too close: (T0304)N83.C and (T0304)R85.C only 0.0000000e+00 apart, marking (T0304)R85.C as missing WARNING: atoms too close: (T0304)P84.N and (T0304)H86.N only 0.0000000e+00 apart, marking (T0304)P84.N as missing WARNING: atoms too close: (T0304)P84.CA and (T0304)H86.CA only 0.0000000e+00 apart, marking (T0304)P84.CA as missing WARNING: atoms too close: (T0304)H88.C and (T0304)A94.C only 0.0000000e+00 apart, marking (T0304)A94.C as missing WARNING: atoms too close: (T0304)T89.N and (T0304)K95.N only 0.0000000e+00 apart, marking (T0304)T89.N as missing WARNING: atoms too close: (T0304)T89.CA and (T0304)K95.CA only 0.0000000e+00 apart, marking (T0304)T89.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.524752 # GDT_score = -20.7921 # GDT_score(maxd=8,maxw=2.9)= -19.5608 # GDT_score(maxd=8,maxw=3.2)= -19.0265 # GDT_score(maxd=8,maxw=3.5)= -18.5207 # GDT_score(maxd=10,maxw=3.8)= -20.1923 # GDT_score(maxd=10,maxw=4)= -19.8262 # GDT_score(maxd=10,maxw=4.2)= -19.4951 # GDT_score(maxd=12,maxw=4.3)= -21.2073 # GDT_score(maxd=12,maxw=4.5)= -20.8327 # GDT_score(maxd=12,maxw=4.7)= -20.4518 # GDT_score(maxd=14,maxw=5.2)= -21.1242 # GDT_score(maxd=14,maxw=5.5)= -20.5521 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.50495 # GDT_score = -18.0693 # GDT_score(maxd=8,maxw=2.9)= -17.3405 # GDT_score(maxd=8,maxw=3.2)= -16.8287 # GDT_score(maxd=8,maxw=3.5)= -16.3377 # GDT_score(maxd=10,maxw=3.8)= -17.5756 # GDT_score(maxd=10,maxw=4)= -17.2413 # GDT_score(maxd=10,maxw=4.2)= -16.8928 # GDT_score(maxd=12,maxw=4.3)= -18.5205 # GDT_score(maxd=12,maxw=4.5)= -18.1374 # GDT_score(maxd=12,maxw=4.7)= -17.7593 # GDT_score(maxd=14,maxw=5.2)= -18.361 # GDT_score(maxd=14,maxw=5.5)= -17.8228 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0304)S79.C and (T0304)L82.C only 0.0000000e+00 apart, marking (T0304)L82.C as missing WARNING: atoms too close: (T0304)G80.N and (T0304)N83.N only 0.0000000e+00 apart, marking (T0304)G80.N as missing WARNING: atoms too close: (T0304)G80.CA and (T0304)N83.CA only 0.0000000e+00 apart, marking (T0304)G80.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0304.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0304)T25.C and (T0304)E37.C only 0.0000000e+00 apart, marking (T0304)E37.C as missing WARNING: atoms too close: (T0304)V26.N and (T0304)G38.N only 0.0000000e+00 apart, marking (T0304)V26.N as missing WARNING: atoms too close: (T0304)V26.CA and (T0304)G38.CA only 0.0000000e+00 apart, marking (T0304)V26.CA as missing WARNING: atoms too close: (T0304)R47.C and (T0304)L53.C only 0.0000000e+00 apart, marking (T0304)L53.C as missing WARNING: atoms too close: (T0304)A48.N and (T0304)F54.N only 0.0000000e+00 apart, marking (T0304)A48.N as missing WARNING: atoms too close: (T0304)A48.CA and (T0304)F54.CA only 0.0000000e+00 apart, marking (T0304)A48.CA as missing WARNING: atoms too close: (T0304)D63.C and (T0304)P67.C only 0.0000000e+00 apart, marking (T0304)P67.C as missing WARNING: atoms too close: (T0304)Q64.N and (T0304)L68.N only 0.0000000e+00 apart, marking (T0304)Q64.N as missing WARNING: atoms too close: (T0304)Q64.CA and (T0304)L68.CA only 0.0000000e+00 apart, marking (T0304)Q64.CA as missing WARNING: atoms too close: (T0304)H88.C and (T0304)L92.C only 0.0000000e+00 apart, marking (T0304)L92.C as missing WARNING: atoms too close: (T0304)T89.N and (T0304)Y93.N only 0.0000000e+00 apart, marking (T0304)T89.N as missing WARNING: atoms too close: (T0304)T89.CA and (T0304)Y93.CA only 0.0000000e+00 apart, marking (T0304)T89.CA as missing WARNING: atoms too close: (T0304)T103.C and (T0304)L104.C only 0.0000000e+00 apart, marking (T0304)L104.C as missing WARNING: atoms too close: (T0304)L104.N and (T0304)S105.N only 0.0000000e+00 apart, marking (T0304)L104.N as missing WARNING: atoms too close: (T0304)L104.CA and (T0304)S105.CA only 0.0000000e+00 apart, marking (T0304)L104.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt2.gromacs0.pdb.gz looking for model 1 Error: Reading chain from PDB file T0304.try1-opt2.gromacs0.pdb.gz failed. # ReadConformPDB reading from PDB file T0304.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try23-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try24-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try25-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 Error: Reading chain from PDB file T0304.try25-opt2.gromacs0.repack-nonPC.pdb.gz failed. # ReadConformPDB reading from PDB file T0304.try25-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try26-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try27-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try28-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try29-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try30-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try31-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try32-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try33-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try34-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try35-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0304.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0304.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_948409263.pdb -s /var/tmp/to_scwrl_948409263.seq -o /var/tmp/from_scwrl_948409263.pdb > /var/tmp/scwrl_948409263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948409263.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2027653809.pdb -s /var/tmp/to_scwrl_2027653809.seq -o /var/tmp/from_scwrl_2027653809.pdb > /var/tmp/scwrl_2027653809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027653809.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_801696875.pdb -s /var/tmp/to_scwrl_801696875.seq -o /var/tmp/from_scwrl_801696875.pdb > /var/tmp/scwrl_801696875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_801696875.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1790417779.pdb -s /var/tmp/to_scwrl_1790417779.seq -o /var/tmp/from_scwrl_1790417779.pdb > /var/tmp/scwrl_1790417779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790417779.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_571761241.pdb -s /var/tmp/to_scwrl_571761241.seq -o /var/tmp/from_scwrl_571761241.pdb > /var/tmp/scwrl_571761241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_571761241.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_970009442.pdb -s /var/tmp/to_scwrl_970009442.seq -o /var/tmp/from_scwrl_970009442.pdb > /var/tmp/scwrl_970009442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_970009442.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1778249888.pdb -s /var/tmp/to_scwrl_1778249888.seq -o /var/tmp/from_scwrl_1778249888.pdb > /var/tmp/scwrl_1778249888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1778249888.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_206336282.pdb -s /var/tmp/to_scwrl_206336282.seq -o /var/tmp/from_scwrl_206336282.pdb > /var/tmp/scwrl_206336282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_206336282.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1628011824.pdb -s /var/tmp/to_scwrl_1628011824.seq -o /var/tmp/from_scwrl_1628011824.pdb > /var/tmp/scwrl_1628011824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628011824.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_151416334.pdb -s /var/tmp/to_scwrl_151416334.seq -o /var/tmp/from_scwrl_151416334.pdb > /var/tmp/scwrl_151416334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151416334.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1937051120.pdb -s /var/tmp/to_scwrl_1937051120.seq -o /var/tmp/from_scwrl_1937051120.pdb > /var/tmp/scwrl_1937051120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1937051120.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_514909517.pdb -s /var/tmp/to_scwrl_514909517.seq -o /var/tmp/from_scwrl_514909517.pdb > /var/tmp/scwrl_514909517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514909517.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_430874022.pdb -s /var/tmp/to_scwrl_430874022.seq -o /var/tmp/from_scwrl_430874022.pdb > /var/tmp/scwrl_430874022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_430874022.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_550654482.pdb -s /var/tmp/to_scwrl_550654482.seq -o /var/tmp/from_scwrl_550654482.pdb > /var/tmp/scwrl_550654482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_550654482.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1152361085.pdb -s /var/tmp/to_scwrl_1152361085.seq -o /var/tmp/from_scwrl_1152361085.pdb > /var/tmp/scwrl_1152361085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1152361085.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1871110170.pdb -s /var/tmp/to_scwrl_1871110170.seq -o /var/tmp/from_scwrl_1871110170.pdb > /var/tmp/scwrl_1871110170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1871110170.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_821695936.pdb -s /var/tmp/to_scwrl_821695936.seq -o /var/tmp/from_scwrl_821695936.pdb > /var/tmp/scwrl_821695936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821695936.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_720554795.pdb -s /var/tmp/to_scwrl_720554795.seq -o /var/tmp/from_scwrl_720554795.pdb > /var/tmp/scwrl_720554795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_720554795.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_12720371.pdb -s /var/tmp/to_scwrl_12720371.seq -o /var/tmp/from_scwrl_12720371.pdb > /var/tmp/scwrl_12720371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12720371.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_697269792.pdb -s /var/tmp/to_scwrl_697269792.seq -o /var/tmp/from_scwrl_697269792.pdb > /var/tmp/scwrl_697269792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697269792.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_76715489.pdb -s /var/tmp/to_scwrl_76715489.seq -o /var/tmp/from_scwrl_76715489.pdb > /var/tmp/scwrl_76715489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_76715489.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_633474898.pdb -s /var/tmp/to_scwrl_633474898.seq -o /var/tmp/from_scwrl_633474898.pdb > /var/tmp/scwrl_633474898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_633474898.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1603134793.pdb -s /var/tmp/to_scwrl_1603134793.seq -o /var/tmp/from_scwrl_1603134793.pdb > /var/tmp/scwrl_1603134793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1603134793.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1472173392.pdb -s /var/tmp/to_scwrl_1472173392.seq -o /var/tmp/from_scwrl_1472173392.pdb > /var/tmp/scwrl_1472173392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472173392.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1005554119.pdb -s /var/tmp/to_scwrl_1005554119.seq -o /var/tmp/from_scwrl_1005554119.pdb > /var/tmp/scwrl_1005554119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005554119.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_929397223.pdb -s /var/tmp/to_scwrl_929397223.seq -o /var/tmp/from_scwrl_929397223.pdb > /var/tmp/scwrl_929397223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929397223.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1839821331.pdb -s /var/tmp/to_scwrl_1839821331.seq -o /var/tmp/from_scwrl_1839821331.pdb > /var/tmp/scwrl_1839821331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1839821331.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_411136928.pdb -s /var/tmp/to_scwrl_411136928.seq -o /var/tmp/from_scwrl_411136928.pdb > /var/tmp/scwrl_411136928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411136928.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1936463539.pdb -s /var/tmp/to_scwrl_1936463539.seq -o /var/tmp/from_scwrl_1936463539.pdb > /var/tmp/scwrl_1936463539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1936463539.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1968139673.pdb -s /var/tmp/to_scwrl_1968139673.seq -o /var/tmp/from_scwrl_1968139673.pdb > /var/tmp/scwrl_1968139673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1968139673.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_62163477.pdb -s /var/tmp/to_scwrl_62163477.seq -o /var/tmp/from_scwrl_62163477.pdb > /var/tmp/scwrl_62163477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62163477.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_737389155.pdb -s /var/tmp/to_scwrl_737389155.seq -o /var/tmp/from_scwrl_737389155.pdb > /var/tmp/scwrl_737389155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_737389155.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1848309835.pdb -s /var/tmp/to_scwrl_1848309835.seq -o /var/tmp/from_scwrl_1848309835.pdb > /var/tmp/scwrl_1848309835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1848309835.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_863860352.pdb -s /var/tmp/to_scwrl_863860352.seq -o /var/tmp/from_scwrl_863860352.pdb > /var/tmp/scwrl_863860352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_863860352.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_380323287.pdb -s /var/tmp/to_scwrl_380323287.seq -o /var/tmp/from_scwrl_380323287.pdb > /var/tmp/scwrl_380323287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_380323287.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_272587429.pdb -s /var/tmp/to_scwrl_272587429.seq -o /var/tmp/from_scwrl_272587429.pdb > /var/tmp/scwrl_272587429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_272587429.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1833869793.pdb -s /var/tmp/to_scwrl_1833869793.seq -o /var/tmp/from_scwrl_1833869793.pdb > /var/tmp/scwrl_1833869793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1833869793.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_11089528.pdb -s /var/tmp/to_scwrl_11089528.seq -o /var/tmp/from_scwrl_11089528.pdb > /var/tmp/scwrl_11089528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_11089528.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_478923712.pdb -s /var/tmp/to_scwrl_478923712.seq -o /var/tmp/from_scwrl_478923712.pdb > /var/tmp/scwrl_478923712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478923712.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1314397971.pdb -s /var/tmp/to_scwrl_1314397971.seq -o /var/tmp/from_scwrl_1314397971.pdb > /var/tmp/scwrl_1314397971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1314397971.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_162505862.pdb -s /var/tmp/to_scwrl_162505862.seq -o /var/tmp/from_scwrl_162505862.pdb > /var/tmp/scwrl_162505862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_162505862.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_268491185.pdb -s /var/tmp/to_scwrl_268491185.seq -o /var/tmp/from_scwrl_268491185.pdb > /var/tmp/scwrl_268491185.log Error: Couldn't open file /var/tmp/from_scwrl_268491185.pdb or /var/tmp/from_scwrl_268491185.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_268491185_b.pdb or decoys//var/tmp/from_scwrl_268491185_b.pdb.gz for input Trying /var/tmp/from_scwrl_268491185_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_268491185_b.pdb or /var/tmp/from_scwrl_268491185_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_268491185_a.pdb or decoys//var/tmp/from_scwrl_268491185_a.pdb.gz for input Trying /var/tmp/from_scwrl_268491185_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_268491185_a.pdb or /var/tmp/from_scwrl_268491185_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_268491185.pdb or /var/tmp/from_scwrl_268491185_b.pdb or /var/tmp/from_scwrl_268491185_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1829307488.pdb -s /var/tmp/to_scwrl_1829307488.seq -o /var/tmp/from_scwrl_1829307488.pdb > /var/tmp/scwrl_1829307488.log Error: Couldn't open file /var/tmp/from_scwrl_1829307488.pdb or /var/tmp/from_scwrl_1829307488.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1829307488_b.pdb or decoys//var/tmp/from_scwrl_1829307488_b.pdb.gz for input Trying /var/tmp/from_scwrl_1829307488_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1829307488_b.pdb or /var/tmp/from_scwrl_1829307488_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1829307488_a.pdb or decoys//var/tmp/from_scwrl_1829307488_a.pdb.gz for input Trying /var/tmp/from_scwrl_1829307488_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1829307488_a.pdb or /var/tmp/from_scwrl_1829307488_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1829307488.pdb or /var/tmp/from_scwrl_1829307488_b.pdb or /var/tmp/from_scwrl_1829307488_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_593379885.pdb -s /var/tmp/to_scwrl_593379885.seq -o /var/tmp/from_scwrl_593379885.pdb > /var/tmp/scwrl_593379885.log Error: Couldn't open file /var/tmp/from_scwrl_593379885.pdb or /var/tmp/from_scwrl_593379885.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_593379885_b.pdb or decoys//var/tmp/from_scwrl_593379885_b.pdb.gz for input Trying /var/tmp/from_scwrl_593379885_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_593379885_b.pdb or /var/tmp/from_scwrl_593379885_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_593379885_a.pdb or decoys//var/tmp/from_scwrl_593379885_a.pdb.gz for input Trying /var/tmp/from_scwrl_593379885_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_593379885_a.pdb or /var/tmp/from_scwrl_593379885_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_593379885.pdb or /var/tmp/from_scwrl_593379885_b.pdb or /var/tmp/from_scwrl_593379885_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_819145667.pdb -s /var/tmp/to_scwrl_819145667.seq -o /var/tmp/from_scwrl_819145667.pdb > /var/tmp/scwrl_819145667.log Error: Couldn't open file /var/tmp/from_scwrl_819145667.pdb or /var/tmp/from_scwrl_819145667.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_819145667_b.pdb or decoys//var/tmp/from_scwrl_819145667_b.pdb.gz for input Trying /var/tmp/from_scwrl_819145667_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_819145667_b.pdb or /var/tmp/from_scwrl_819145667_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_819145667_a.pdb or decoys//var/tmp/from_scwrl_819145667_a.pdb.gz for input Trying /var/tmp/from_scwrl_819145667_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_819145667_a.pdb or /var/tmp/from_scwrl_819145667_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_819145667.pdb or /var/tmp/from_scwrl_819145667_b.pdb or /var/tmp/from_scwrl_819145667_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_834184927.pdb -s /var/tmp/to_scwrl_834184927.seq -o /var/tmp/from_scwrl_834184927.pdb > /var/tmp/scwrl_834184927.log Error: Couldn't open file /var/tmp/from_scwrl_834184927.pdb or /var/tmp/from_scwrl_834184927.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_834184927_b.pdb or decoys//var/tmp/from_scwrl_834184927_b.pdb.gz for input Trying /var/tmp/from_scwrl_834184927_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_834184927_b.pdb or /var/tmp/from_scwrl_834184927_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_834184927_a.pdb or decoys//var/tmp/from_scwrl_834184927_a.pdb.gz for input Trying /var/tmp/from_scwrl_834184927_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_834184927_a.pdb or /var/tmp/from_scwrl_834184927_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_834184927.pdb or /var/tmp/from_scwrl_834184927_b.pdb or /var/tmp/from_scwrl_834184927_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_317006408.pdb -s /var/tmp/to_scwrl_317006408.seq -o /var/tmp/from_scwrl_317006408.pdb > /var/tmp/scwrl_317006408.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_317006408.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1640841602.pdb -s /var/tmp/to_scwrl_1640841602.seq -o /var/tmp/from_scwrl_1640841602.pdb > /var/tmp/scwrl_1640841602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1640841602.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1554739721.pdb -s /var/tmp/to_scwrl_1554739721.seq -o /var/tmp/from_scwrl_1554739721.pdb > /var/tmp/scwrl_1554739721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554739721.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_329726779.pdb -s /var/tmp/to_scwrl_329726779.seq -o /var/tmp/from_scwrl_329726779.pdb > /var/tmp/scwrl_329726779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329726779.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_190627748.pdb -s /var/tmp/to_scwrl_190627748.seq -o /var/tmp/from_scwrl_190627748.pdb > /var/tmp/scwrl_190627748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190627748.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1631455210.pdb -s /var/tmp/to_scwrl_1631455210.seq -o /var/tmp/from_scwrl_1631455210.pdb > /var/tmp/scwrl_1631455210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631455210.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_963201678.pdb -s /var/tmp/to_scwrl_963201678.seq -o /var/tmp/from_scwrl_963201678.pdb > /var/tmp/scwrl_963201678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963201678.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1793762541.pdb -s /var/tmp/to_scwrl_1793762541.seq -o /var/tmp/from_scwrl_1793762541.pdb > /var/tmp/scwrl_1793762541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793762541.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_956144956.pdb -s /var/tmp/to_scwrl_956144956.seq -o /var/tmp/from_scwrl_956144956.pdb > /var/tmp/scwrl_956144956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_956144956.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1968755796.pdb -s /var/tmp/to_scwrl_1968755796.seq -o /var/tmp/from_scwrl_1968755796.pdb > /var/tmp/scwrl_1968755796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1968755796.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_575676117.pdb -s /var/tmp/to_scwrl_575676117.seq -o /var/tmp/from_scwrl_575676117.pdb > /var/tmp/scwrl_575676117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_575676117.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_648482640.pdb -s /var/tmp/to_scwrl_648482640.seq -o /var/tmp/from_scwrl_648482640.pdb > /var/tmp/scwrl_648482640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_648482640.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_232409077.pdb -s /var/tmp/to_scwrl_232409077.seq -o /var/tmp/from_scwrl_232409077.pdb > /var/tmp/scwrl_232409077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_232409077.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_364656009.pdb -s /var/tmp/to_scwrl_364656009.seq -o /var/tmp/from_scwrl_364656009.pdb > /var/tmp/scwrl_364656009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364656009.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_469138666.pdb -s /var/tmp/to_scwrl_469138666.seq -o /var/tmp/from_scwrl_469138666.pdb > /var/tmp/scwrl_469138666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_469138666.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_294572554.pdb -s /var/tmp/to_scwrl_294572554.seq -o /var/tmp/from_scwrl_294572554.pdb > /var/tmp/scwrl_294572554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_294572554.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 25, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 27, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 121, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 123, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 449, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 451, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1102045163.pdb -s /var/tmp/to_scwrl_1102045163.seq -o /var/tmp/from_scwrl_1102045163.pdb > /var/tmp/scwrl_1102045163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102045163.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_169964854.pdb -s /var/tmp/to_scwrl_169964854.seq -o /var/tmp/from_scwrl_169964854.pdb > /var/tmp/scwrl_169964854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169964854.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1158432905.pdb -s /var/tmp/to_scwrl_1158432905.seq -o /var/tmp/from_scwrl_1158432905.pdb > /var/tmp/scwrl_1158432905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1158432905.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1482368450.pdb -s /var/tmp/to_scwrl_1482368450.seq -o /var/tmp/from_scwrl_1482368450.pdb > /var/tmp/scwrl_1482368450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482368450.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_442552284.pdb -s /var/tmp/to_scwrl_442552284.seq -o /var/tmp/from_scwrl_442552284.pdb > /var/tmp/scwrl_442552284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_442552284.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 25, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 27, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 121, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 123, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 449, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 451, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_844819052.pdb -s /var/tmp/to_scwrl_844819052.seq -o /var/tmp/from_scwrl_844819052.pdb > /var/tmp/scwrl_844819052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_844819052.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1493457978.pdb -s /var/tmp/to_scwrl_1493457978.seq -o /var/tmp/from_scwrl_1493457978.pdb > /var/tmp/scwrl_1493457978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493457978.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_921475996.pdb -s /var/tmp/to_scwrl_921475996.seq -o /var/tmp/from_scwrl_921475996.pdb > /var/tmp/scwrl_921475996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921475996.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_11733376.pdb -s /var/tmp/to_scwrl_11733376.seq -o /var/tmp/from_scwrl_11733376.pdb > /var/tmp/scwrl_11733376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_11733376.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1655963841.pdb -s /var/tmp/to_scwrl_1655963841.seq -o /var/tmp/from_scwrl_1655963841.pdb > /var/tmp/scwrl_1655963841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1655963841.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1189967180.pdb -s /var/tmp/to_scwrl_1189967180.seq -o /var/tmp/from_scwrl_1189967180.pdb > /var/tmp/scwrl_1189967180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189967180.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1841040864.pdb -s /var/tmp/to_scwrl_1841040864.seq -o /var/tmp/from_scwrl_1841040864.pdb > /var/tmp/scwrl_1841040864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1841040864.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_101860079.pdb -s /var/tmp/to_scwrl_101860079.seq -o /var/tmp/from_scwrl_101860079.pdb > /var/tmp/scwrl_101860079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101860079.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2009112847.pdb -s /var/tmp/to_scwrl_2009112847.seq -o /var/tmp/from_scwrl_2009112847.pdb > /var/tmp/scwrl_2009112847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2009112847.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_527742144.pdb -s /var/tmp/to_scwrl_527742144.seq -o /var/tmp/from_scwrl_527742144.pdb > /var/tmp/scwrl_527742144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_527742144.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_418866487.pdb -s /var/tmp/to_scwrl_418866487.seq -o /var/tmp/from_scwrl_418866487.pdb > /var/tmp/scwrl_418866487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_418866487.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1502470802.pdb -s /var/tmp/to_scwrl_1502470802.seq -o /var/tmp/from_scwrl_1502470802.pdb > /var/tmp/scwrl_1502470802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1502470802.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2082481865.pdb -s /var/tmp/to_scwrl_2082481865.seq -o /var/tmp/from_scwrl_2082481865.pdb > /var/tmp/scwrl_2082481865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2082481865.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_748593267.pdb -s /var/tmp/to_scwrl_748593267.seq -o /var/tmp/from_scwrl_748593267.pdb > /var/tmp/scwrl_748593267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_748593267.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1693098550.pdb -s /var/tmp/to_scwrl_1693098550.seq -o /var/tmp/from_scwrl_1693098550.pdb > /var/tmp/scwrl_1693098550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1693098550.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1566453429.pdb -s /var/tmp/to_scwrl_1566453429.seq -o /var/tmp/from_scwrl_1566453429.pdb > /var/tmp/scwrl_1566453429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566453429.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1711794944.pdb -s /var/tmp/to_scwrl_1711794944.seq -o /var/tmp/from_scwrl_1711794944.pdb > /var/tmp/scwrl_1711794944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1711794944.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1339377445.pdb -s /var/tmp/to_scwrl_1339377445.seq -o /var/tmp/from_scwrl_1339377445.pdb > /var/tmp/scwrl_1339377445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1339377445.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_375114738.pdb -s /var/tmp/to_scwrl_375114738.seq -o /var/tmp/from_scwrl_375114738.pdb > /var/tmp/scwrl_375114738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_375114738.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1533067093.pdb -s /var/tmp/to_scwrl_1533067093.seq -o /var/tmp/from_scwrl_1533067093.pdb > /var/tmp/scwrl_1533067093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1533067093.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1915053562.pdb -s /var/tmp/to_scwrl_1915053562.seq -o /var/tmp/from_scwrl_1915053562.pdb > /var/tmp/scwrl_1915053562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915053562.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1023597379.pdb -s /var/tmp/to_scwrl_1023597379.seq -o /var/tmp/from_scwrl_1023597379.pdb > /var/tmp/scwrl_1023597379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1023597379.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1765476170.pdb -s /var/tmp/to_scwrl_1765476170.seq -o /var/tmp/from_scwrl_1765476170.pdb > /var/tmp/scwrl_1765476170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765476170.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_132225925.pdb -s /var/tmp/to_scwrl_132225925.seq -o /var/tmp/from_scwrl_132225925.pdb > /var/tmp/scwrl_132225925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_132225925.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1492736044.pdb -s /var/tmp/to_scwrl_1492736044.seq -o /var/tmp/from_scwrl_1492736044.pdb > /var/tmp/scwrl_1492736044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492736044.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2060048724.pdb -s /var/tmp/to_scwrl_2060048724.seq -o /var/tmp/from_scwrl_2060048724.pdb > /var/tmp/scwrl_2060048724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060048724.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1234271088.pdb -s /var/tmp/to_scwrl_1234271088.seq -o /var/tmp/from_scwrl_1234271088.pdb > /var/tmp/scwrl_1234271088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1234271088.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1662700899.pdb -s /var/tmp/to_scwrl_1662700899.seq -o /var/tmp/from_scwrl_1662700899.pdb > /var/tmp/scwrl_1662700899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1662700899.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1070997983.pdb -s /var/tmp/to_scwrl_1070997983.seq -o /var/tmp/from_scwrl_1070997983.pdb > /var/tmp/scwrl_1070997983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1070997983.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_569155893.pdb -s /var/tmp/to_scwrl_569155893.seq -o /var/tmp/from_scwrl_569155893.pdb > /var/tmp/scwrl_569155893.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_569155893.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2105253183.pdb -s /var/tmp/to_scwrl_2105253183.seq -o /var/tmp/from_scwrl_2105253183.pdb > /var/tmp/scwrl_2105253183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2105253183.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1915817034.pdb -s /var/tmp/to_scwrl_1915817034.seq -o /var/tmp/from_scwrl_1915817034.pdb > /var/tmp/scwrl_1915817034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915817034.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2062613871.pdb -s /var/tmp/to_scwrl_2062613871.seq -o /var/tmp/from_scwrl_2062613871.pdb > /var/tmp/scwrl_2062613871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2062613871.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_879245532.pdb -s /var/tmp/to_scwrl_879245532.seq -o /var/tmp/from_scwrl_879245532.pdb > /var/tmp/scwrl_879245532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_879245532.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1927550411.pdb -s /var/tmp/to_scwrl_1927550411.seq -o /var/tmp/from_scwrl_1927550411.pdb > /var/tmp/scwrl_1927550411.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1927550411.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1571094065.pdb -s /var/tmp/to_scwrl_1571094065.seq -o /var/tmp/from_scwrl_1571094065.pdb > /var/tmp/scwrl_1571094065.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1571094065.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2069212712.pdb -s /var/tmp/to_scwrl_2069212712.seq -o /var/tmp/from_scwrl_2069212712.pdb > /var/tmp/scwrl_2069212712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2069212712.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1621107628.pdb -s /var/tmp/to_scwrl_1621107628.seq -o /var/tmp/from_scwrl_1621107628.pdb > /var/tmp/scwrl_1621107628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621107628.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1672954144.pdb -s /var/tmp/to_scwrl_1672954144.seq -o /var/tmp/from_scwrl_1672954144.pdb > /var/tmp/scwrl_1672954144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1672954144.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1930841912.pdb -s /var/tmp/to_scwrl_1930841912.seq -o /var/tmp/from_scwrl_1930841912.pdb > /var/tmp/scwrl_1930841912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1930841912.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1366126.pdb -s /var/tmp/to_scwrl_1366126.seq -o /var/tmp/from_scwrl_1366126.pdb > /var/tmp/scwrl_1366126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366126.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2091820632.pdb -s /var/tmp/to_scwrl_2091820632.seq -o /var/tmp/from_scwrl_2091820632.pdb > /var/tmp/scwrl_2091820632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2091820632.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1285829067.pdb -s /var/tmp/to_scwrl_1285829067.seq -o /var/tmp/from_scwrl_1285829067.pdb > /var/tmp/scwrl_1285829067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1285829067.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2083847991.pdb -s /var/tmp/to_scwrl_2083847991.seq -o /var/tmp/from_scwrl_2083847991.pdb > /var/tmp/scwrl_2083847991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083847991.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_692930252.pdb -s /var/tmp/to_scwrl_692930252.seq -o /var/tmp/from_scwrl_692930252.pdb > /var/tmp/scwrl_692930252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_692930252.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_831443972.pdb -s /var/tmp/to_scwrl_831443972.seq -o /var/tmp/from_scwrl_831443972.pdb > /var/tmp/scwrl_831443972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831443972.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1502817773.pdb -s /var/tmp/to_scwrl_1502817773.seq -o /var/tmp/from_scwrl_1502817773.pdb > /var/tmp/scwrl_1502817773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1502817773.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_257241549.pdb -s /var/tmp/to_scwrl_257241549.seq -o /var/tmp/from_scwrl_257241549.pdb > /var/tmp/scwrl_257241549.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_257241549.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_23337770.pdb -s /var/tmp/to_scwrl_23337770.seq -o /var/tmp/from_scwrl_23337770.pdb > /var/tmp/scwrl_23337770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_23337770.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1877932512.pdb -s /var/tmp/to_scwrl_1877932512.seq -o /var/tmp/from_scwrl_1877932512.pdb > /var/tmp/scwrl_1877932512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877932512.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1790308642.pdb -s /var/tmp/to_scwrl_1790308642.seq -o /var/tmp/from_scwrl_1790308642.pdb > /var/tmp/scwrl_1790308642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1790308642.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1938391332.pdb -s /var/tmp/to_scwrl_1938391332.seq -o /var/tmp/from_scwrl_1938391332.pdb > /var/tmp/scwrl_1938391332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938391332.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_754046244.pdb -s /var/tmp/to_scwrl_754046244.seq -o /var/tmp/from_scwrl_754046244.pdb > /var/tmp/scwrl_754046244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_754046244.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1408301165.pdb -s /var/tmp/to_scwrl_1408301165.seq -o /var/tmp/from_scwrl_1408301165.pdb > /var/tmp/scwrl_1408301165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408301165.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2070617257.pdb -s /var/tmp/to_scwrl_2070617257.seq -o /var/tmp/from_scwrl_2070617257.pdb > /var/tmp/scwrl_2070617257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2070617257.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_99298641.pdb -s /var/tmp/to_scwrl_99298641.seq -o /var/tmp/from_scwrl_99298641.pdb > /var/tmp/scwrl_99298641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_99298641.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1320866242.pdb -s /var/tmp/to_scwrl_1320866242.seq -o /var/tmp/from_scwrl_1320866242.pdb > /var/tmp/scwrl_1320866242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1320866242.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 45 < previous residue 122 in servers/POMYSL_TS4.pdb.gz # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1157404699.pdb -s /var/tmp/to_scwrl_1157404699.seq -o /var/tmp/from_scwrl_1157404699.pdb > /var/tmp/scwrl_1157404699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1157404699.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1761999540.pdb -s /var/tmp/to_scwrl_1761999540.seq -o /var/tmp/from_scwrl_1761999540.pdb > /var/tmp/scwrl_1761999540.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1761999540.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_244380578.pdb -s /var/tmp/to_scwrl_244380578.seq -o /var/tmp/from_scwrl_244380578.pdb > /var/tmp/scwrl_244380578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_244380578.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1726560592.pdb -s /var/tmp/to_scwrl_1726560592.seq -o /var/tmp/from_scwrl_1726560592.pdb > /var/tmp/scwrl_1726560592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1726560592.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1719769076.pdb -s /var/tmp/to_scwrl_1719769076.seq -o /var/tmp/from_scwrl_1719769076.pdb > /var/tmp/scwrl_1719769076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1719769076.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_12713965.pdb -s /var/tmp/to_scwrl_12713965.seq -o /var/tmp/from_scwrl_12713965.pdb > /var/tmp/scwrl_12713965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12713965.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1641690816.pdb -s /var/tmp/to_scwrl_1641690816.seq -o /var/tmp/from_scwrl_1641690816.pdb > /var/tmp/scwrl_1641690816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1641690816.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_451530961.pdb -s /var/tmp/to_scwrl_451530961.seq -o /var/tmp/from_scwrl_451530961.pdb > /var/tmp/scwrl_451530961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_451530961.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1940264376.pdb -s /var/tmp/to_scwrl_1940264376.seq -o /var/tmp/from_scwrl_1940264376.pdb > /var/tmp/scwrl_1940264376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1940264376.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1065301236.pdb -s /var/tmp/to_scwrl_1065301236.seq -o /var/tmp/from_scwrl_1065301236.pdb > /var/tmp/scwrl_1065301236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1065301236.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_373260026.pdb -s /var/tmp/to_scwrl_373260026.seq -o /var/tmp/from_scwrl_373260026.pdb > /var/tmp/scwrl_373260026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_373260026.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1413888358.pdb -s /var/tmp/to_scwrl_1413888358.seq -o /var/tmp/from_scwrl_1413888358.pdb > /var/tmp/scwrl_1413888358.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1413888358.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_590771733.pdb -s /var/tmp/to_scwrl_590771733.seq -o /var/tmp/from_scwrl_590771733.pdb > /var/tmp/scwrl_590771733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_590771733.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_156618291.pdb -s /var/tmp/to_scwrl_156618291.seq -o /var/tmp/from_scwrl_156618291.pdb > /var/tmp/scwrl_156618291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_156618291.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1415254484.pdb -s /var/tmp/to_scwrl_1415254484.seq -o /var/tmp/from_scwrl_1415254484.pdb > /var/tmp/scwrl_1415254484.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1415254484.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_535108718.pdb -s /var/tmp/to_scwrl_535108718.seq -o /var/tmp/from_scwrl_535108718.pdb > /var/tmp/scwrl_535108718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535108718.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1442447359.pdb -s /var/tmp/to_scwrl_1442447359.seq -o /var/tmp/from_scwrl_1442447359.pdb > /var/tmp/scwrl_1442447359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1442447359.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1351618828.pdb -s /var/tmp/to_scwrl_1351618828.seq -o /var/tmp/from_scwrl_1351618828.pdb > /var/tmp/scwrl_1351618828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1351618828.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1228038969.pdb -s /var/tmp/to_scwrl_1228038969.seq -o /var/tmp/from_scwrl_1228038969.pdb > /var/tmp/scwrl_1228038969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228038969.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_126407684.pdb -s /var/tmp/to_scwrl_126407684.seq -o /var/tmp/from_scwrl_126407684.pdb > /var/tmp/scwrl_126407684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126407684.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_706952956.pdb -s /var/tmp/to_scwrl_706952956.seq -o /var/tmp/from_scwrl_706952956.pdb > /var/tmp/scwrl_706952956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_706952956.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1485280518.pdb -s /var/tmp/to_scwrl_1485280518.seq -o /var/tmp/from_scwrl_1485280518.pdb > /var/tmp/scwrl_1485280518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1485280518.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_149745454.pdb -s /var/tmp/to_scwrl_149745454.seq -o /var/tmp/from_scwrl_149745454.pdb > /var/tmp/scwrl_149745454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_149745454.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_437401821.pdb -s /var/tmp/to_scwrl_437401821.seq -o /var/tmp/from_scwrl_437401821.pdb > /var/tmp/scwrl_437401821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437401821.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1128105513.pdb -s /var/tmp/to_scwrl_1128105513.seq -o /var/tmp/from_scwrl_1128105513.pdb > /var/tmp/scwrl_1128105513.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1128105513.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2088136786.pdb -s /var/tmp/to_scwrl_2088136786.seq -o /var/tmp/from_scwrl_2088136786.pdb > /var/tmp/scwrl_2088136786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2088136786.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1191448064.pdb -s /var/tmp/to_scwrl_1191448064.seq -o /var/tmp/from_scwrl_1191448064.pdb > /var/tmp/scwrl_1191448064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1191448064.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_388923032.pdb -s /var/tmp/to_scwrl_388923032.seq -o /var/tmp/from_scwrl_388923032.pdb > /var/tmp/scwrl_388923032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_388923032.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2011270397.pdb -s /var/tmp/to_scwrl_2011270397.seq -o /var/tmp/from_scwrl_2011270397.pdb > /var/tmp/scwrl_2011270397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011270397.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1290746705.pdb -s /var/tmp/to_scwrl_1290746705.seq -o /var/tmp/from_scwrl_1290746705.pdb > /var/tmp/scwrl_1290746705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1290746705.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1709789274.pdb -s /var/tmp/to_scwrl_1709789274.seq -o /var/tmp/from_scwrl_1709789274.pdb > /var/tmp/scwrl_1709789274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1709789274.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1021191450.pdb -s /var/tmp/to_scwrl_1021191450.seq -o /var/tmp/from_scwrl_1021191450.pdb > /var/tmp/scwrl_1021191450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1021191450.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_905262600.pdb -s /var/tmp/to_scwrl_905262600.seq -o /var/tmp/from_scwrl_905262600.pdb > /var/tmp/scwrl_905262600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_905262600.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1954169852.pdb -s /var/tmp/to_scwrl_1954169852.seq -o /var/tmp/from_scwrl_1954169852.pdb > /var/tmp/scwrl_1954169852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954169852.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_600268395.pdb -s /var/tmp/to_scwrl_600268395.seq -o /var/tmp/from_scwrl_600268395.pdb > /var/tmp/scwrl_600268395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_600268395.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_477548029.pdb -s /var/tmp/to_scwrl_477548029.seq -o /var/tmp/from_scwrl_477548029.pdb > /var/tmp/scwrl_477548029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_477548029.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1966883818.pdb -s /var/tmp/to_scwrl_1966883818.seq -o /var/tmp/from_scwrl_1966883818.pdb > /var/tmp/scwrl_1966883818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966883818.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_94475564.pdb -s /var/tmp/to_scwrl_94475564.seq -o /var/tmp/from_scwrl_94475564.pdb > /var/tmp/scwrl_94475564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94475564.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_929078991.pdb -s /var/tmp/to_scwrl_929078991.seq -o /var/tmp/from_scwrl_929078991.pdb > /var/tmp/scwrl_929078991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929078991.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1759664547.pdb -s /var/tmp/to_scwrl_1759664547.seq -o /var/tmp/from_scwrl_1759664547.pdb > /var/tmp/scwrl_1759664547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1759664547.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1159776799.pdb -s /var/tmp/to_scwrl_1159776799.seq -o /var/tmp/from_scwrl_1159776799.pdb > /var/tmp/scwrl_1159776799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1159776799.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1302339016.pdb -s /var/tmp/to_scwrl_1302339016.seq -o /var/tmp/from_scwrl_1302339016.pdb > /var/tmp/scwrl_1302339016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1302339016.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1026069259.pdb -s /var/tmp/to_scwrl_1026069259.seq -o /var/tmp/from_scwrl_1026069259.pdb > /var/tmp/scwrl_1026069259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1026069259.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1750548533.pdb -s /var/tmp/to_scwrl_1750548533.seq -o /var/tmp/from_scwrl_1750548533.pdb > /var/tmp/scwrl_1750548533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750548533.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1458957308.pdb -s /var/tmp/to_scwrl_1458957308.seq -o /var/tmp/from_scwrl_1458957308.pdb > /var/tmp/scwrl_1458957308.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1458957308.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_293840096.pdb -s /var/tmp/to_scwrl_293840096.seq -o /var/tmp/from_scwrl_293840096.pdb > /var/tmp/scwrl_293840096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_293840096.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_138173604.pdb -s /var/tmp/to_scwrl_138173604.seq -o /var/tmp/from_scwrl_138173604.pdb > /var/tmp/scwrl_138173604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_138173604.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_753921021.pdb -s /var/tmp/to_scwrl_753921021.seq -o /var/tmp/from_scwrl_753921021.pdb > /var/tmp/scwrl_753921021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753921021.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1645458925.pdb -s /var/tmp/to_scwrl_1645458925.seq -o /var/tmp/from_scwrl_1645458925.pdb > /var/tmp/scwrl_1645458925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1645458925.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1366212574.pdb -s /var/tmp/to_scwrl_1366212574.seq -o /var/tmp/from_scwrl_1366212574.pdb > /var/tmp/scwrl_1366212574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366212574.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_880328705.pdb -s /var/tmp/to_scwrl_880328705.seq -o /var/tmp/from_scwrl_880328705.pdb > /var/tmp/scwrl_880328705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_880328705.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_204928234.pdb -s /var/tmp/to_scwrl_204928234.seq -o /var/tmp/from_scwrl_204928234.pdb > /var/tmp/scwrl_204928234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204928234.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_704009446.pdb -s /var/tmp/to_scwrl_704009446.seq -o /var/tmp/from_scwrl_704009446.pdb > /var/tmp/scwrl_704009446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704009446.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1030074159.pdb -s /var/tmp/to_scwrl_1030074159.seq -o /var/tmp/from_scwrl_1030074159.pdb > /var/tmp/scwrl_1030074159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1030074159.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_642330055.pdb -s /var/tmp/to_scwrl_642330055.seq -o /var/tmp/from_scwrl_642330055.pdb > /var/tmp/scwrl_642330055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642330055.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1832114960.pdb -s /var/tmp/to_scwrl_1832114960.seq -o /var/tmp/from_scwrl_1832114960.pdb > /var/tmp/scwrl_1832114960.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1832114960.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_970727298.pdb -s /var/tmp/to_scwrl_970727298.seq -o /var/tmp/from_scwrl_970727298.pdb > /var/tmp/scwrl_970727298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_970727298.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1833778119.pdb -s /var/tmp/to_scwrl_1833778119.seq -o /var/tmp/from_scwrl_1833778119.pdb > /var/tmp/scwrl_1833778119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1833778119.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_73554345.pdb -s /var/tmp/to_scwrl_73554345.seq -o /var/tmp/from_scwrl_73554345.pdb > /var/tmp/scwrl_73554345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_73554345.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_834514048.pdb -s /var/tmp/to_scwrl_834514048.seq -o /var/tmp/from_scwrl_834514048.pdb > /var/tmp/scwrl_834514048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_834514048.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_977041178.pdb -s /var/tmp/to_scwrl_977041178.seq -o /var/tmp/from_scwrl_977041178.pdb > /var/tmp/scwrl_977041178.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_977041178.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1783343620.pdb -s /var/tmp/to_scwrl_1783343620.seq -o /var/tmp/from_scwrl_1783343620.pdb > /var/tmp/scwrl_1783343620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783343620.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1855705497.pdb -s /var/tmp/to_scwrl_1855705497.seq -o /var/tmp/from_scwrl_1855705497.pdb > /var/tmp/scwrl_1855705497.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855705497.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1882303777.pdb -s /var/tmp/to_scwrl_1882303777.seq -o /var/tmp/from_scwrl_1882303777.pdb > /var/tmp/scwrl_1882303777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1882303777.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1590029825.pdb -s /var/tmp/to_scwrl_1590029825.seq -o /var/tmp/from_scwrl_1590029825.pdb > /var/tmp/scwrl_1590029825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590029825.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_308490245.pdb -s /var/tmp/to_scwrl_308490245.seq -o /var/tmp/from_scwrl_308490245.pdb > /var/tmp/scwrl_308490245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_308490245.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_212368160.pdb -s /var/tmp/to_scwrl_212368160.seq -o /var/tmp/from_scwrl_212368160.pdb > /var/tmp/scwrl_212368160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_212368160.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1409429996.pdb -s /var/tmp/to_scwrl_1409429996.seq -o /var/tmp/from_scwrl_1409429996.pdb > /var/tmp/scwrl_1409429996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1409429996.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_402965810.pdb -s /var/tmp/to_scwrl_402965810.seq -o /var/tmp/from_scwrl_402965810.pdb > /var/tmp/scwrl_402965810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402965810.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1141447150.pdb -s /var/tmp/to_scwrl_1141447150.seq -o /var/tmp/from_scwrl_1141447150.pdb > /var/tmp/scwrl_1141447150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1141447150.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1021610898.pdb -s /var/tmp/to_scwrl_1021610898.seq -o /var/tmp/from_scwrl_1021610898.pdb > /var/tmp/scwrl_1021610898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1021610898.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1562742609.pdb -s /var/tmp/to_scwrl_1562742609.seq -o /var/tmp/from_scwrl_1562742609.pdb > /var/tmp/scwrl_1562742609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562742609.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_296302520.pdb -s /var/tmp/to_scwrl_296302520.seq -o /var/tmp/from_scwrl_296302520.pdb > /var/tmp/scwrl_296302520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_296302520.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2047680156.pdb -s /var/tmp/to_scwrl_2047680156.seq -o /var/tmp/from_scwrl_2047680156.pdb > /var/tmp/scwrl_2047680156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2047680156.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1165807495.pdb -s /var/tmp/to_scwrl_1165807495.seq -o /var/tmp/from_scwrl_1165807495.pdb > /var/tmp/scwrl_1165807495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1165807495.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1755259828.pdb -s /var/tmp/to_scwrl_1755259828.seq -o /var/tmp/from_scwrl_1755259828.pdb > /var/tmp/scwrl_1755259828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1755259828.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_194036606.pdb -s /var/tmp/to_scwrl_194036606.seq -o /var/tmp/from_scwrl_194036606.pdb > /var/tmp/scwrl_194036606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_194036606.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1303981100.pdb -s /var/tmp/to_scwrl_1303981100.seq -o /var/tmp/from_scwrl_1303981100.pdb > /var/tmp/scwrl_1303981100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1303981100.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_361697202.pdb -s /var/tmp/to_scwrl_361697202.seq -o /var/tmp/from_scwrl_361697202.pdb > /var/tmp/scwrl_361697202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_361697202.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1839495531.pdb -s /var/tmp/to_scwrl_1839495531.seq -o /var/tmp/from_scwrl_1839495531.pdb > /var/tmp/scwrl_1839495531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1839495531.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_522710028.pdb -s /var/tmp/to_scwrl_522710028.seq -o /var/tmp/from_scwrl_522710028.pdb > /var/tmp/scwrl_522710028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_522710028.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1242025906.pdb -s /var/tmp/to_scwrl_1242025906.seq -o /var/tmp/from_scwrl_1242025906.pdb > /var/tmp/scwrl_1242025906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242025906.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2044423765.pdb -s /var/tmp/to_scwrl_2044423765.seq -o /var/tmp/from_scwrl_2044423765.pdb > /var/tmp/scwrl_2044423765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2044423765.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)C99.CA and (T0304)L104.CA only 0.000 apart, marking (T0304)L104.CA as missing WARNING: atoms too close: (T0304)K100.CA and (T0304)S105.CA only 0.000 apart, marking (T0304)S105.CA as missing WARNING: atoms too close: (T0304)A101.CA and (T0304)S106.CA only 0.000 apart, marking (T0304)S106.CA as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1226719473.pdb -s /var/tmp/to_scwrl_1226719473.seq -o /var/tmp/from_scwrl_1226719473.pdb > /var/tmp/scwrl_1226719473.log Error: Couldn't open file /var/tmp/from_scwrl_1226719473.pdb or /var/tmp/from_scwrl_1226719473.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1226719473_b.pdb or decoys//var/tmp/from_scwrl_1226719473_b.pdb.gz for input Trying /var/tmp/from_scwrl_1226719473_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1226719473_b.pdb or /var/tmp/from_scwrl_1226719473_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1226719473_a.pdb or decoys//var/tmp/from_scwrl_1226719473_a.pdb.gz for input Trying /var/tmp/from_scwrl_1226719473_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1226719473_a.pdb or /var/tmp/from_scwrl_1226719473_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1226719473.pdb or /var/tmp/from_scwrl_1226719473_b.pdb or /var/tmp/from_scwrl_1226719473_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_124616418.pdb -s /var/tmp/to_scwrl_124616418.seq -o /var/tmp/from_scwrl_124616418.pdb > /var/tmp/scwrl_124616418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_124616418.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_539270173.pdb -s /var/tmp/to_scwrl_539270173.seq -o /var/tmp/from_scwrl_539270173.pdb > /var/tmp/scwrl_539270173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_539270173.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_911350787.pdb -s /var/tmp/to_scwrl_911350787.seq -o /var/tmp/from_scwrl_911350787.pdb > /var/tmp/scwrl_911350787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_911350787.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1095343716.pdb -s /var/tmp/to_scwrl_1095343716.seq -o /var/tmp/from_scwrl_1095343716.pdb > /var/tmp/scwrl_1095343716.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1095343716.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_225564645.pdb -s /var/tmp/to_scwrl_225564645.seq -o /var/tmp/from_scwrl_225564645.pdb > /var/tmp/scwrl_225564645.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225564645.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_984905133.pdb -s /var/tmp/to_scwrl_984905133.seq -o /var/tmp/from_scwrl_984905133.pdb > /var/tmp/scwrl_984905133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984905133.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1929857764.pdb -s /var/tmp/to_scwrl_1929857764.seq -o /var/tmp/from_scwrl_1929857764.pdb > /var/tmp/scwrl_1929857764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1929857764.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1202605822.pdb -s /var/tmp/to_scwrl_1202605822.seq -o /var/tmp/from_scwrl_1202605822.pdb > /var/tmp/scwrl_1202605822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202605822.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_620765106.pdb -s /var/tmp/to_scwrl_620765106.seq -o /var/tmp/from_scwrl_620765106.pdb > /var/tmp/scwrl_620765106.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620765106.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1638079615.pdb -s /var/tmp/to_scwrl_1638079615.seq -o /var/tmp/from_scwrl_1638079615.pdb > /var/tmp/scwrl_1638079615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1638079615.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_937425954.pdb -s /var/tmp/to_scwrl_937425954.seq -o /var/tmp/from_scwrl_937425954.pdb > /var/tmp/scwrl_937425954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_937425954.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_63311284.pdb -s /var/tmp/to_scwrl_63311284.seq -o /var/tmp/from_scwrl_63311284.pdb > /var/tmp/scwrl_63311284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63311284.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1946569860.pdb -s /var/tmp/to_scwrl_1946569860.seq -o /var/tmp/from_scwrl_1946569860.pdb > /var/tmp/scwrl_1946569860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946569860.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1149794113.pdb -s /var/tmp/to_scwrl_1149794113.seq -o /var/tmp/from_scwrl_1149794113.pdb > /var/tmp/scwrl_1149794113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1149794113.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1472741281.pdb -s /var/tmp/to_scwrl_1472741281.seq -o /var/tmp/from_scwrl_1472741281.pdb > /var/tmp/scwrl_1472741281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472741281.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_202052023.pdb -s /var/tmp/to_scwrl_202052023.seq -o /var/tmp/from_scwrl_202052023.pdb > /var/tmp/scwrl_202052023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202052023.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_143757617.pdb -s /var/tmp/to_scwrl_143757617.seq -o /var/tmp/from_scwrl_143757617.pdb > /var/tmp/scwrl_143757617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_143757617.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_346868532.pdb -s /var/tmp/to_scwrl_346868532.seq -o /var/tmp/from_scwrl_346868532.pdb > /var/tmp/scwrl_346868532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_346868532.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1764794633.pdb -s /var/tmp/to_scwrl_1764794633.seq -o /var/tmp/from_scwrl_1764794633.pdb > /var/tmp/scwrl_1764794633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1764794633.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_440060137.pdb -s /var/tmp/to_scwrl_440060137.seq -o /var/tmp/from_scwrl_440060137.pdb > /var/tmp/scwrl_440060137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440060137.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_247065041.pdb -s /var/tmp/to_scwrl_247065041.seq -o /var/tmp/from_scwrl_247065041.pdb > /var/tmp/scwrl_247065041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_247065041.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_783118482.pdb -s /var/tmp/to_scwrl_783118482.seq -o /var/tmp/from_scwrl_783118482.pdb > /var/tmp/scwrl_783118482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_783118482.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)P6.O and (T0304)G7.N only 0.000 apart, marking (T0304)G7.N as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_47836319.pdb -s /var/tmp/to_scwrl_47836319.seq -o /var/tmp/from_scwrl_47836319.pdb > /var/tmp/scwrl_47836319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_47836319.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_441101647.pdb -s /var/tmp/to_scwrl_441101647.seq -o /var/tmp/from_scwrl_441101647.pdb > /var/tmp/scwrl_441101647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_441101647.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2087099582.pdb -s /var/tmp/to_scwrl_2087099582.seq -o /var/tmp/from_scwrl_2087099582.pdb > /var/tmp/scwrl_2087099582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087099582.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_409533521.pdb -s /var/tmp/to_scwrl_409533521.seq -o /var/tmp/from_scwrl_409533521.pdb > /var/tmp/scwrl_409533521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_409533521.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0304)C24.O and (T0304)T25.N only 0.000 apart, marking (T0304)T25.N as missing # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_133113531.pdb -s /var/tmp/to_scwrl_133113531.seq -o /var/tmp/from_scwrl_133113531.pdb > /var/tmp/scwrl_133113531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_133113531.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_462325963.pdb -s /var/tmp/to_scwrl_462325963.seq -o /var/tmp/from_scwrl_462325963.pdb > /var/tmp/scwrl_462325963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462325963.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1651559428.pdb -s /var/tmp/to_scwrl_1651559428.seq -o /var/tmp/from_scwrl_1651559428.pdb > /var/tmp/scwrl_1651559428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1651559428.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_30053649.pdb -s /var/tmp/to_scwrl_30053649.seq -o /var/tmp/from_scwrl_30053649.pdb > /var/tmp/scwrl_30053649.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30053649.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1689045437.pdb -s /var/tmp/to_scwrl_1689045437.seq -o /var/tmp/from_scwrl_1689045437.pdb > /var/tmp/scwrl_1689045437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1689045437.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1776175846.pdb -s /var/tmp/to_scwrl_1776175846.seq -o /var/tmp/from_scwrl_1776175846.pdb > /var/tmp/scwrl_1776175846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776175846.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_569323822.pdb -s /var/tmp/to_scwrl_569323822.seq -o /var/tmp/from_scwrl_569323822.pdb > /var/tmp/scwrl_569323822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_569323822.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_452912577.pdb -s /var/tmp/to_scwrl_452912577.seq -o /var/tmp/from_scwrl_452912577.pdb > /var/tmp/scwrl_452912577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_452912577.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_724035916.pdb -s /var/tmp/to_scwrl_724035916.seq -o /var/tmp/from_scwrl_724035916.pdb > /var/tmp/scwrl_724035916.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724035916.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_794888467.pdb -s /var/tmp/to_scwrl_794888467.seq -o /var/tmp/from_scwrl_794888467.pdb > /var/tmp/scwrl_794888467.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794888467.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1437817709.pdb -s /var/tmp/to_scwrl_1437817709.seq -o /var/tmp/from_scwrl_1437817709.pdb > /var/tmp/scwrl_1437817709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1437817709.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_506410034.pdb -s /var/tmp/to_scwrl_506410034.seq -o /var/tmp/from_scwrl_506410034.pdb > /var/tmp/scwrl_506410034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_506410034.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1997494290.pdb -s /var/tmp/to_scwrl_1997494290.seq -o /var/tmp/from_scwrl_1997494290.pdb > /var/tmp/scwrl_1997494290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1997494290.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2058582815.pdb -s /var/tmp/to_scwrl_2058582815.seq -o /var/tmp/from_scwrl_2058582815.pdb > /var/tmp/scwrl_2058582815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2058582815.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2144489649.pdb -s /var/tmp/to_scwrl_2144489649.seq -o /var/tmp/from_scwrl_2144489649.pdb > /var/tmp/scwrl_2144489649.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2144489649.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_787436597.pdb -s /var/tmp/to_scwrl_787436597.seq -o /var/tmp/from_scwrl_787436597.pdb > /var/tmp/scwrl_787436597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787436597.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_2121894100.pdb -s /var/tmp/to_scwrl_2121894100.seq -o /var/tmp/from_scwrl_2121894100.pdb > /var/tmp/scwrl_2121894100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2121894100.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1943575862.pdb -s /var/tmp/to_scwrl_1943575862.seq -o /var/tmp/from_scwrl_1943575862.pdb > /var/tmp/scwrl_1943575862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943575862.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0304 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 110 ; scwrl3 -i /var/tmp/to_scwrl_1937230710.pdb -s /var/tmp/to_scwrl_1937230710.seq -o /var/tmp/from_scwrl_1937230710.pdb > /var/tmp/scwrl_1937230710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1937230710.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 37.6983 sec, elapsed time= 183.48 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 279.35 shub_TS1 costs 0 real_cost = 284.733 panther2_TS1-scwrl costs 0 real_cost = 434.691 panther2_TS1 costs 0 real_cost = 443.661 nFOLD_TS5-scwrl costs 0 real_cost = 360.534 nFOLD_TS5 costs 0 real_cost = 360.536 nFOLD_TS4-scwrl costs 0 real_cost = 331.261 nFOLD_TS4 costs 0 real_cost = 331.259 nFOLD_TS3-scwrl costs 0 real_cost = 315.648 nFOLD_TS3 costs 0 real_cost = 381.414 nFOLD_TS2-scwrl costs 0 real_cost = 294.335 nFOLD_TS2 costs 0 real_cost = 294.338 nFOLD_TS1-scwrl costs 0 real_cost = 328.574 nFOLD_TS1 costs 0 real_cost = 328.577 mGen-3D_TS1-scwrl costs 0 real_cost = 245.388 mGen-3D_TS1 costs 0 real_cost = 303.36 keasar-server_TS5-scwrl costs 0 real_cost = 297.523 keasar-server_TS5 costs 0 real_cost = 299.067 keasar-server_TS4-scwrl costs 0 real_cost = 301.624 keasar-server_TS4 costs 0 real_cost = 303.439 keasar-server_TS3-scwrl costs 0 real_cost = 321.833 keasar-server_TS3 costs 0 real_cost = 320.493 keasar-server_TS2-scwrl costs 0 real_cost = 262.348 keasar-server_TS2 costs 0 real_cost = 282.861 keasar-server_TS1-scwrl costs 0 real_cost = 319.507 keasar-server_TS1 costs 0 real_cost = 318.615 karypis.srv_TS5-scwrl costs 0 real_cost = 294.357 karypis.srv_TS5 costs 0 real_cost = 292.981 karypis.srv_TS4-scwrl costs 0 real_cost = 303.796 karypis.srv_TS4 costs 0 real_cost = 303.796 karypis.srv_TS3-scwrl costs 0 real_cost = 354.136 karypis.srv_TS3 costs 0 real_cost = 351.043 karypis.srv_TS2-scwrl costs 0 real_cost = 290.728 karypis.srv_TS2 costs 0 real_cost = 291.635 karypis.srv_TS1-scwrl costs 0 real_cost = 256.398 karypis.srv_TS1 costs 0 real_cost = 253.398 karypis.srv.4_TS5-scwrl costs 0 real_cost = 304.217 karypis.srv.4_TS5 costs 0 real_cost = 304.213 karypis.srv.4_TS4-scwrl costs 0 real_cost = 262.332 karypis.srv.4_TS4 costs 0 real_cost = 262.332 karypis.srv.4_TS3-scwrl costs 0 real_cost = 320.516 karypis.srv.4_TS3 costs 0 real_cost = 320.615 karypis.srv.4_TS2-scwrl costs 0 real_cost = 363.728 karypis.srv.4_TS2 costs 0 real_cost = 363.728 karypis.srv.4_TS1-scwrl costs 0 real_cost = 306.459 karypis.srv.4_TS1 costs 0 real_cost = 306.459 karypis.srv.2_TS5-scwrl costs 0 real_cost = 265.892 karypis.srv.2_TS5 costs 0 real_cost = 265.892 karypis.srv.2_TS4-scwrl costs 0 real_cost = 311.477 karypis.srv.2_TS4 costs 0 real_cost = 311.477 karypis.srv.2_TS3-scwrl costs 0 real_cost = 323.935 karypis.srv.2_TS3 costs 0 real_cost = 324.055 karypis.srv.2_TS2-scwrl costs 0 real_cost = 247.58 karypis.srv.2_TS2 costs 0 real_cost = 247.58 karypis.srv.2_TS1-scwrl costs 0 real_cost = 281.261 karypis.srv.2_TS1 costs 0 real_cost = 281.236 forecast-s_AL5-scwrl costs 0 real_cost = 421.452 forecast-s_AL5 costs 0 real_cost = 458.104 forecast-s_AL4-scwrl costs 0 real_cost = 449.504 forecast-s_AL4 costs 0 real_cost = 487.281 forecast-s_AL3-scwrl costs 0 real_cost = 286.478 forecast-s_AL3 costs 0 real_cost = 331.726 forecast-s_AL2-scwrl costs 0 real_cost = 413.421 forecast-s_AL2 costs 0 real_cost = 435.341 forecast-s_AL1-scwrl costs 0 real_cost = 449.191 forecast-s_AL1 costs 0 real_cost = 449.191 beautshotbase_TS1-scwrl costs 0 real_cost = 284.623 beautshotbase_TS1 costs 0 real_cost = 282.909 beautshot_TS1-scwrl costs 0 real_cost = 247.802 beautshot_TS1 costs 0 real_cost = 253.105 Zhang-Server_TS5-scwrl costs 0 real_cost = 156.882 Zhang-Server_TS5 costs 0 real_cost = 160.09 Zhang-Server_TS4-scwrl costs 0 real_cost = 114.544 Zhang-Server_TS4 costs 0 real_cost = 124.738 Zhang-Server_TS3-scwrl costs 0 real_cost = 111.732 Zhang-Server_TS3 costs 0 real_cost = 117.226 Zhang-Server_TS2-scwrl costs 0 real_cost = 90.3175 Zhang-Server_TS2 costs 0 real_cost = 94.9378 Zhang-Server_TS1-scwrl costs 0 real_cost = 95.9525 Zhang-Server_TS1 costs 0 real_cost = 93.9485 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 375.708 UNI-EID_sfst_AL5 costs 0 real_cost = 411.429 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 375.507 UNI-EID_sfst_AL4 costs 0 real_cost = 404.761 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 325.264 UNI-EID_sfst_AL3 costs 0 real_cost = 339.89 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 324.829 UNI-EID_sfst_AL2 costs 0 real_cost = 342.139 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 374.034 UNI-EID_sfst_AL1 costs 0 real_cost = 395.402 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 365.058 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 460.385 UNI-EID_bnmx_TS5 costs 0 real_cost = 480.315 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 354.471 UNI-EID_bnmx_TS4 costs 0 real_cost = 415.409 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 312.3 UNI-EID_bnmx_TS3 costs 0 real_cost = 357.531 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 319.489 UNI-EID_bnmx_TS2 costs 0 real_cost = 341.421 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 356.317 UNI-EID_bnmx_TS1 costs 0 real_cost = 401.638 SPARKS2_TS5-scwrl costs 0 real_cost = 248.724 SPARKS2_TS5 costs 0 real_cost = 248.328 SPARKS2_TS4-scwrl costs 0 real_cost = 271.94 SPARKS2_TS4 costs 0 real_cost = 271.399 SPARKS2_TS3-scwrl costs 0 real_cost = 310.76 SPARKS2_TS3 costs 0 real_cost = 307.594 SPARKS2_TS2-scwrl costs 0 real_cost = 324.257 SPARKS2_TS2 costs 0 real_cost = 336.905 SPARKS2_TS1-scwrl costs 0 real_cost = 317.879 SPARKS2_TS1 costs 0 real_cost = 316.015 SP4_TS5-scwrl costs 0 real_cost = 211.186 SP4_TS5 costs 0 real_cost = 229.256 SP4_TS4-scwrl costs 0 real_cost = 219.715 SP4_TS4 costs 0 real_cost = 217.716 SP4_TS3-scwrl costs 0 real_cost = 244 SP4_TS3 costs 0 real_cost = 251.821 SP4_TS2-scwrl costs 0 real_cost = 277.777 SP4_TS2 costs 0 real_cost = 276.37 SP4_TS1-scwrl costs 0 real_cost = 225.503 SP4_TS1 costs 0 real_cost = 235.756 SP3_TS5-scwrl costs 0 real_cost = 247.913 SP3_TS5 costs 0 real_cost = 255.241 SP3_TS4-scwrl costs 0 real_cost = 236.971 SP3_TS4 costs 0 real_cost = 248.741 SP3_TS3-scwrl costs 0 real_cost = 235.889 SP3_TS3 costs 0 real_cost = 246.212 SP3_TS2-scwrl costs 0 real_cost = 277.777 SP3_TS2 costs 0 real_cost = 276.37 SP3_TS1-scwrl costs 0 real_cost = 258.397 SP3_TS1 costs 0 real_cost = 260.871 SAM_T06_server_TS5-scwrl costs 0 real_cost = 399 SAM_T06_server_TS5 costs 0 real_cost = 356.146 SAM_T06_server_TS4-scwrl costs 0 real_cost = 321.269 SAM_T06_server_TS4 costs 0 real_cost = 321.378 SAM_T06_server_TS3-scwrl costs 0 real_cost = 443.151 SAM_T06_server_TS3 costs 0 real_cost = 415.868 SAM_T06_server_TS2-scwrl costs 0 real_cost = 241.047 SAM_T06_server_TS2 costs 0 real_cost = 253.512 SAM_T06_server_TS1-scwrl costs 0 real_cost = 314.765 SAM_T06_server_TS1 costs 0 real_cost = 316.08 SAM-T02_AL5-scwrl costs 0 real_cost = 305.298 SAM-T02_AL5 costs 0 real_cost = 338.55 SAM-T02_AL4-scwrl costs 0 real_cost = 444.272 SAM-T02_AL4 costs 0 real_cost = 449.219 SAM-T02_AL3-scwrl costs 0 real_cost = 448.322 SAM-T02_AL3 costs 0 real_cost = 452.555 SAM-T02_AL2-scwrl costs 0 real_cost = 436.515 SAM-T02_AL2 costs 0 real_cost = 470.163 SAM-T02_AL1-scwrl costs 0 real_cost = 388.903 SAM-T02_AL1 costs 0 real_cost = 447.255 ROKKY_TS5-scwrl costs 0 real_cost = 140.591 ROKKY_TS5 costs 0 real_cost = 229.832 ROKKY_TS4-scwrl costs 0 real_cost = 172.721 ROKKY_TS4 costs 0 real_cost = 273.68 ROKKY_TS3-scwrl costs 0 real_cost = 181.048 ROKKY_TS3 costs 0 real_cost = 278.694 ROKKY_TS2-scwrl costs 0 real_cost = 177.25 ROKKY_TS2 costs 0 real_cost = 279.739 ROKKY_TS1-scwrl costs 0 real_cost = 207.6 ROKKY_TS1 costs 0 real_cost = 304.287 ROBETTA_TS5-scwrl costs 0 real_cost = 139.242 ROBETTA_TS5 costs 0 real_cost = 144.049 ROBETTA_TS4-scwrl costs 0 real_cost = 145.436 ROBETTA_TS4 costs 0 real_cost = 137.205 ROBETTA_TS3-scwrl costs 0 real_cost = 126.899 ROBETTA_TS3 costs 0 real_cost = 130.355 ROBETTA_TS2-scwrl costs 0 real_cost = 144.562 ROBETTA_TS2 costs 0 real_cost = 148.349 ROBETTA_TS1-scwrl costs 0 real_cost = 181.084 ROBETTA_TS1 costs 0 real_cost = 175.08 RAPTOR_TS5-scwrl costs 0 real_cost = 258.504 RAPTOR_TS5 costs 0 real_cost = 258.905 RAPTOR_TS4-scwrl costs 0 real_cost = 203.378 RAPTOR_TS4 costs 0 real_cost = 217.177 RAPTOR_TS3-scwrl costs 0 real_cost = 281.44 RAPTOR_TS3 costs 0 real_cost = 280.593 RAPTOR_TS2-scwrl costs 0 real_cost = 219.157 RAPTOR_TS2 costs 0 real_cost = 227.282 RAPTOR_TS1-scwrl costs 0 real_cost = 253.846 RAPTOR_TS1 costs 0 real_cost = 258.603 RAPTORESS_TS5-scwrl costs 0 real_cost = 297.581 RAPTORESS_TS5 costs 0 real_cost = 298.552 RAPTORESS_TS4-scwrl costs 0 real_cost = 276.108 RAPTORESS_TS4 costs 0 real_cost = 288.64 RAPTORESS_TS3-scwrl costs 0 real_cost = 287.207 RAPTORESS_TS3 costs 0 real_cost = 291.915 RAPTORESS_TS2-scwrl costs 0 real_cost = 220.671 RAPTORESS_TS2 costs 0 real_cost = 219.166 RAPTORESS_TS1-scwrl costs 0 real_cost = 259.329 RAPTORESS_TS1 costs 0 real_cost = 269.416 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 237.716 RAPTOR-ACE_TS5 costs 0 real_cost = 231.205 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 227.061 RAPTOR-ACE_TS4 costs 0 real_cost = 228.038 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 233.981 RAPTOR-ACE_TS3 costs 0 real_cost = 240.498 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 275.888 RAPTOR-ACE_TS2 costs 0 real_cost = 279.919 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 222.936 RAPTOR-ACE_TS1 costs 0 real_cost = 244.942 Pmodeller6_TS5-scwrl costs 0 real_cost = 145.436 Pmodeller6_TS5 costs 0 real_cost = 137.205 Pmodeller6_TS4-scwrl costs 0 real_cost = 154.017 Pmodeller6_TS4 costs 0 real_cost = 155.944 Pmodeller6_TS3-scwrl costs 0 real_cost = 126.899 Pmodeller6_TS3 costs 0 real_cost = 130.355 Pmodeller6_TS2-scwrl costs 0 real_cost = 144.562 Pmodeller6_TS2 costs 0 real_cost = 148.349 Pmodeller6_TS1-scwrl costs 0 real_cost = 145.579 Pmodeller6_TS1 costs 0 real_cost = 148.026 Phyre-2_TS5-scwrl costs 0 real_cost = 302.831 Phyre-2_TS5 costs 0 real_cost = 298.064 Phyre-2_TS4-scwrl costs 0 real_cost = 301.975 Phyre-2_TS4 costs 0 real_cost = 301.257 Phyre-2_TS3-scwrl costs 0 real_cost = 297.417 Phyre-2_TS3 costs 0 real_cost = 296.484 Phyre-2_TS2-scwrl costs 0 real_cost = 295.6 Phyre-2_TS2 costs 0 real_cost = 294.842 Phyre-2_TS1-scwrl costs 0 real_cost = 297.747 Phyre-2_TS1 costs 0 real_cost = 297.245 Phyre-1_TS1-scwrl costs 0 real_cost = 323.051 Phyre-1_TS1 costs 0 real_cost = 318.922 Pcons6_TS5-scwrl costs 0 real_cost = 253.539 Pcons6_TS5 costs 0 real_cost = 260.664 Pcons6_TS4-scwrl costs 0 real_cost = 145.579 Pcons6_TS4 costs 0 real_cost = 148.026 Pcons6_TS3-scwrl costs 0 real_cost = 221.272 Pcons6_TS3 costs 0 real_cost = 221.272 Pcons6_TS2-scwrl costs 0 real_cost = 243.807 Pcons6_TS2 costs 0 real_cost = 242.716 Pcons6_TS1-scwrl costs 0 real_cost = 222.38 Pcons6_TS1 costs 0 real_cost = 222.38 PROTINFO_TS5-scwrl costs 0 real_cost = 326.84 PROTINFO_TS5 costs 0 real_cost = 325.541 PROTINFO_TS4-scwrl costs 0 real_cost = 325.876 PROTINFO_TS4 costs 0 real_cost = 330.995 PROTINFO_TS3-scwrl costs 0 real_cost = 257.59 PROTINFO_TS3 costs 0 real_cost = 256.396 PROTINFO_TS2-scwrl costs 0 real_cost = 328.817 PROTINFO_TS2 costs 0 real_cost = 328.561 PROTINFO_TS1-scwrl costs 0 real_cost = 251.778 PROTINFO_TS1 costs 0 real_cost = 242.379 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 238.61 PROTINFO-AB_TS5 costs 0 real_cost = 248.14 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 226.672 PROTINFO-AB_TS4 costs 0 real_cost = 235.848 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 226.098 PROTINFO-AB_TS3 costs 0 real_cost = 261.586 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 298.924 PROTINFO-AB_TS2 costs 0 real_cost = 307.915 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 253.286 PROTINFO-AB_TS1 costs 0 real_cost = 268.128 POMYSL_TS5-scwrl costs 0 real_cost = 330.029 POMYSL_TS5 costs 0 real_cost = 330.333 POMYSL_TS4-scwrl costs 0 real_cost = 389.769 POMYSL_TS4 costs 0 real_cost = 387.64 POMYSL_TS3-scwrl costs 0 real_cost = 307.797 POMYSL_TS3 costs 0 real_cost = 310.64 POMYSL_TS2-scwrl costs 0 real_cost = 301.53 POMYSL_TS2 costs 0 real_cost = 304.051 POMYSL_TS1-scwrl costs 0 real_cost = 310.386 POMYSL_TS1 costs 0 real_cost = 314.359 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 328.574 NN_PUT_lab_TS1 costs 0 real_cost = 328.577 MetaTasser_TS5-scwrl costs 0 real_cost = 249.099 MetaTasser_TS5 costs 0 real_cost = 251.172 MetaTasser_TS4-scwrl costs 0 real_cost = 274.171 MetaTasser_TS4 costs 0 real_cost = 279.193 MetaTasser_TS3-scwrl costs 0 real_cost = 243.865 MetaTasser_TS3 costs 0 real_cost = 254.312 MetaTasser_TS2-scwrl costs 0 real_cost = 236.011 MetaTasser_TS2 costs 0 real_cost = 246.04 MetaTasser_TS1-scwrl costs 0 real_cost = 300.834 MetaTasser_TS1 costs 0 real_cost = 300.862 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 272.56 Ma-OPUS-server_TS5 costs 0 real_cost = 283.569 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 251.981 Ma-OPUS-server_TS4 costs 0 real_cost = 248.989 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 235.715 Ma-OPUS-server_TS3 costs 0 real_cost = 236.78 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 314.536 Ma-OPUS-server_TS2 costs 0 real_cost = 308.792 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 209.271 Ma-OPUS-server_TS1 costs 0 real_cost = 218.736 MIG_FROST_AL1-scwrl costs 0 real_cost = 336.619 MIG_FROST_AL1 costs 0 real_cost = 338.958 LOOPP_TS5-scwrl costs 0 real_cost = 288.939 LOOPP_TS5 costs 0 real_cost = 288.869 LOOPP_TS4-scwrl costs 0 real_cost = 289.979 LOOPP_TS4 costs 0 real_cost = 290.631 LOOPP_TS3-scwrl costs 0 real_cost = 224.74 LOOPP_TS3 costs 0 real_cost = 214.063 LOOPP_TS2-scwrl costs 0 real_cost = 284.239 LOOPP_TS2 costs 0 real_cost = 278.683 LOOPP_TS1-scwrl costs 0 real_cost = 315.341 LOOPP_TS1 costs 0 real_cost = 314.344 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 257.189 Huber-Torda-Server_TS5 costs 0 real_cost = 305.254 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 272.276 Huber-Torda-Server_TS4 costs 0 real_cost = 326.589 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 344.569 Huber-Torda-Server_TS3 costs 0 real_cost = 375.363 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 350.993 Huber-Torda-Server_TS2 costs 0 real_cost = 403.798 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 306.354 Huber-Torda-Server_TS1 costs 0 real_cost = 360.241 HHpred3_TS1-scwrl costs 0 real_cost = 305.662 HHpred3_TS1 costs 0 real_cost = 303.4 HHpred2_TS1-scwrl costs 0 real_cost = 226.962 HHpred2_TS1 costs 0 real_cost = 228.294 HHpred1_TS1-scwrl costs 0 real_cost = 309.132 HHpred1_TS1 costs 0 real_cost = 318.84 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 283.591 GeneSilicoMetaServer_TS5 costs 0 real_cost = 292.451 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 190.097 GeneSilicoMetaServer_TS4 costs 0 real_cost = 194.609 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 243.395 GeneSilicoMetaServer_TS3 costs 0 real_cost = 237.9 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 261.057 GeneSilicoMetaServer_TS2 costs 0 real_cost = 270.379 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = 232.69 GeneSilicoMetaServer_TS1 costs 0 real_cost = 232.661 FUNCTION_TS5-scwrl costs 0 real_cost = 288.692 FUNCTION_TS5 costs 0 real_cost = 292.733 FUNCTION_TS4-scwrl costs 0 real_cost = 223.332 FUNCTION_TS4 costs 0 real_cost = 221.578 FUNCTION_TS3-scwrl costs 0 real_cost = 247.328 FUNCTION_TS3 costs 0 real_cost = 251.076 FUNCTION_TS2-scwrl costs 0 real_cost = 293.506 FUNCTION_TS2 costs 0 real_cost = 293.428 FUNCTION_TS1-scwrl costs 0 real_cost = 305.671 FUNCTION_TS1 costs 0 real_cost = 310.563 FUGUE_AL5-scwrl costs 0 real_cost = 274.803 FUGUE_AL5 costs 0 real_cost = 361.8 FUGUE_AL4-scwrl costs 0 real_cost = 326.221 FUGUE_AL4 costs 0 real_cost = 378.659 FUGUE_AL3-scwrl costs 0 real_cost = 334.704 FUGUE_AL3 costs 0 real_cost = 411.798 FUGUE_AL2-scwrl costs 0 real_cost = 330.79 FUGUE_AL2 costs 0 real_cost = 330.79 FUGUE_AL1-scwrl costs 0 real_cost = 403.498 FUGUE_AL1 costs 0 real_cost = 403.498 FUGMOD_TS5-scwrl costs 0 real_cost = 269.179 FUGMOD_TS5 costs 0 real_cost = 266.112 FUGMOD_TS4-scwrl costs 0 real_cost = 284.392 FUGMOD_TS4 costs 0 real_cost = 284.518 FUGMOD_TS3-scwrl costs 0 real_cost = 304.371 FUGMOD_TS3 costs 0 real_cost = 303.76 FUGMOD_TS2-scwrl costs 0 real_cost = 222.351 FUGMOD_TS2 costs 0 real_cost = 223.881 FUGMOD_TS1-scwrl costs 0 real_cost = 302.142 FUGMOD_TS1 costs 0 real_cost = 306.662 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 293.729 FPSOLVER-SERVER_TS5 costs 0 real_cost = 294.954 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 312.388 FPSOLVER-SERVER_TS4 costs 0 real_cost = 311.315 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 316.785 FPSOLVER-SERVER_TS3 costs 0 real_cost = 316.547 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 221.854 FPSOLVER-SERVER_TS2 costs 0 real_cost = 223.015 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 304.007 FPSOLVER-SERVER_TS1 costs 0 real_cost = 306.895 FORTE2_AL5-scwrl costs 0 real_cost = 352.548 FORTE2_AL5 costs 0 real_cost = 438.544 FORTE2_AL4-scwrl costs 0 real_cost = 352.279 FORTE2_AL4 costs 0 real_cost = 438.514 FORTE2_AL3-scwrl costs 0 real_cost = 376.691 FORTE2_AL3 costs 0 real_cost = 376.691 FORTE2_AL2-scwrl costs 0 real_cost = 359.858 FORTE2_AL2 costs 0 real_cost = 452.736 FORTE2_AL1-scwrl costs 0 real_cost = 356.702 FORTE2_AL1 costs 0 real_cost = 437.162 FORTE1_AL5-scwrl costs 0 real_cost = 368.639 FORTE1_AL5 costs 0 real_cost = 463.315 FORTE1_AL4-scwrl costs 0 real_cost = 350.848 FORTE1_AL4 costs 0 real_cost = 437.253 FORTE1_AL3-scwrl costs 0 real_cost = 376.691 FORTE1_AL3 costs 0 real_cost = 376.691 FORTE1_AL2-scwrl costs 0 real_cost = 359.858 FORTE1_AL2 costs 0 real_cost = 452.736 FORTE1_AL1-scwrl costs 0 real_cost = 356.702 FORTE1_AL1 costs 0 real_cost = 437.162 FOLDpro_TS5-scwrl costs 0 real_cost = 293.391 FOLDpro_TS5 costs 0 real_cost = 295.616 FOLDpro_TS4-scwrl costs 0 real_cost = 286.887 FOLDpro_TS4 costs 0 real_cost = 284.894 FOLDpro_TS3-scwrl costs 0 real_cost = 321.441 FOLDpro_TS3 costs 0 real_cost = 326.888 FOLDpro_TS2-scwrl costs 0 real_cost = 313.807 FOLDpro_TS2 costs 0 real_cost = 311.639 FOLDpro_TS1-scwrl costs 0 real_cost = 267.699 FOLDpro_TS1 costs 0 real_cost = 269.696 FAMS_TS5-scwrl costs 0 real_cost = 224.255 FAMS_TS5 costs 0 real_cost = 228.197 FAMS_TS4-scwrl costs 0 real_cost = 245.696 FAMS_TS4 costs 0 real_cost = 246.944 FAMS_TS3-scwrl costs 0 real_cost = 251.222 FAMS_TS3 costs 0 real_cost = 256.547 FAMS_TS2-scwrl costs 0 real_cost = 293.506 FAMS_TS2 costs 0 real_cost = 293.428 FAMS_TS1-scwrl costs 0 real_cost = 268.147 FAMS_TS1 costs 0 real_cost = 273.861 FAMSD_TS5-scwrl costs 0 real_cost = 257.868 FAMSD_TS5 costs 0 real_cost = 263.458 FAMSD_TS4-scwrl costs 0 real_cost = 222.568 FAMSD_TS4 costs 0 real_cost = 218.173 FAMSD_TS3-scwrl costs 0 real_cost = 252.709 FAMSD_TS3 costs 0 real_cost = 247.822 FAMSD_TS2-scwrl costs 0 real_cost = 218.875 FAMSD_TS2 costs 0 real_cost = 218.316 FAMSD_TS1-scwrl costs 0 real_cost = 224.255 FAMSD_TS1 costs 0 real_cost = 228.197 Distill_TS5-scwrl costs 0 real_cost = 368.85 Distill_TS4-scwrl costs 0 real_cost = 361.807 Distill_TS3-scwrl costs 0 real_cost = 366.528 Distill_TS2-scwrl costs 0 real_cost = 367.403 Distill_TS1-scwrl costs 0 real_cost = 361.745 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 315.731 CaspIta-FOX_TS5 costs 0 real_cost = 315.361 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 296.232 CaspIta-FOX_TS4 costs 0 real_cost = 295.174 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 335.587 CaspIta-FOX_TS3 costs 0 real_cost = 334.938 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 284.998 CaspIta-FOX_TS2 costs 0 real_cost = 285.435 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 445.622 CaspIta-FOX_TS1 costs 0 real_cost = 444.442 CIRCLE_TS5-scwrl costs 0 real_cost = 268.147 CIRCLE_TS5 costs 0 real_cost = 273.861 CIRCLE_TS4-scwrl costs 0 real_cost = 251.222 CIRCLE_TS4 costs 0 real_cost = 256.547 CIRCLE_TS3-scwrl costs 0 real_cost = 224.255 CIRCLE_TS3 costs 0 real_cost = 228.197 CIRCLE_TS2-scwrl costs 0 real_cost = 220.553 CIRCLE_TS2 costs 0 real_cost = 235.305 CIRCLE_TS1-scwrl costs 0 real_cost = 245.696 CIRCLE_TS1 costs 0 real_cost = 246.944 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 184.407 Bilab-ENABLE_TS5 costs 0 real_cost = 184.425 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 212.529 Bilab-ENABLE_TS4 costs 0 real_cost = 213.168 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 209.39 Bilab-ENABLE_TS3 costs 0 real_cost = 209.445 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 201.557 Bilab-ENABLE_TS2 costs 0 real_cost = 201.557 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 175.362 Bilab-ENABLE_TS1 costs 0 real_cost = 176.127 BayesHH_TS1-scwrl costs 0 real_cost = 276.983 BayesHH_TS1 costs 0 real_cost = 271.772 ABIpro_TS5-scwrl costs 0 real_cost = 215.339 ABIpro_TS5 costs 0 real_cost = 215.339 ABIpro_TS4-scwrl costs 0 real_cost = 184.251 ABIpro_TS4 costs 0 real_cost = 186.524 ABIpro_TS3-scwrl costs 0 real_cost = 190.97 ABIpro_TS3 costs 0 real_cost = 190.97 ABIpro_TS2-scwrl costs 0 real_cost = 167.16 ABIpro_TS2 costs 0 real_cost = 167.187 ABIpro_TS1-scwrl costs 0 real_cost = 232.946 ABIpro_TS1 costs 0 real_cost = 230.81 3Dpro_TS5-scwrl costs 0 real_cost = 317.37 3Dpro_TS5 costs 0 real_cost = 331.437 3Dpro_TS4-scwrl costs 0 real_cost = 327.661 3Dpro_TS4 costs 0 real_cost = 336.39 3Dpro_TS3-scwrl costs 0 real_cost = 167.16 3Dpro_TS3 costs 0 real_cost = 167.187 3Dpro_TS2-scwrl costs 0 real_cost = 276.866 3Dpro_TS2 costs 0 real_cost = 279.511 3Dpro_TS1-scwrl costs 0 real_cost = 232.946 3Dpro_TS1 costs 0 real_cost = 230.81 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 368.804 3D-JIGSAW_TS5 costs 0 real_cost = 367.723 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 286.42 3D-JIGSAW_TS4 costs 0 real_cost = 289.267 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 292.65 3D-JIGSAW_TS3 costs 0 real_cost = 302.271 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 296.99 3D-JIGSAW_TS2 costs 0 real_cost = 299.231 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 308.976 3D-JIGSAW_TS1 costs 0 real_cost = 318.221 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 310.592 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 307.588 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 310.592 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 307.588 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 367.161 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 362.631 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 367.161 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 362.631 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 300.697 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 298.373 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 234.688 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 233.288 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 269.941 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 268.541 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 289.821 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 289.821 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 265.43 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 263.929 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 307.762 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 304.798 T0304.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 184.141 T0304.try9-opt2.pdb.gz costs 0 real_cost = 181.767 T0304.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = 182.45 T0304.try9-opt1.pdb.gz costs 0 real_cost = 177.645 T0304.try9-opt1-scwrl.pdb.gz costs 0 real_cost = 171.883 T0304.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 197.438 T0304.try8-opt2.pdb.gz costs 0 real_cost = 200.91 T0304.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = 207.256 T0304.try8-opt1.pdb.gz costs 0 real_cost = 200.552 T0304.try8-opt1-scwrl.pdb.gz costs 0 real_cost = 196.714 T0304.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 220.275 T0304.try7-opt2.pdb.gz costs 0 real_cost = 215.783 T0304.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = 215.62 T0304.try7-opt1.pdb.gz costs 0 real_cost = 218.615 T0304.try7-opt1-scwrl.pdb.gz costs 0 real_cost = 217.281 T0304.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 280.031 T0304.try6-opt2.pdb.gz costs 0 real_cost = 276.693 T0304.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = 274.462 T0304.try6-opt1.pdb.gz costs 0 real_cost = 275.733 T0304.try6-opt1-scwrl.pdb.gz costs 0 real_cost = 278.097 T0304.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 278.606 T0304.try5-opt2.pdb.gz costs 0 real_cost = 275.828 T0304.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = 275.11 T0304.try5-opt1.pdb.gz costs 0 real_cost = 276.099 T0304.try5-opt1-scwrl.pdb.gz costs 0 real_cost = 278.162 T0304.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 142.371 T0304.try4-opt2.pdb.gz costs 0 real_cost = 143.833 T0304.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 143.998 T0304.try4-opt1.pdb.gz costs 0 real_cost = 147.906 T0304.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 143.401 T0304.try35-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 311.202 T0304.try35-opt2.pdb.gz costs 0 real_cost = 308.924 T0304.try35-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 308.892 T0304.try35-opt2.gromacs0.pdb.gz costs 0 real_cost = 309.638 T0304.try35-opt1.pdb.gz costs 0 real_cost = 310.525 T0304.try35-opt1-scwrl.pdb.gz costs 0 real_cost = 311.072 T0304.try34-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 264.636 T0304.try34-opt2.pdb.gz costs 0 real_cost = 263.996 T0304.try34-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 259.103 T0304.try34-opt2.gromacs0.pdb.gz costs 0 real_cost = 258.774 T0304.try34-opt1.pdb.gz costs 0 real_cost = 262.029 T0304.try34-opt1-scwrl.pdb.gz costs 0 real_cost = 265.043 T0304.try33-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 167.076 T0304.try33-opt2.pdb.gz costs 0 real_cost = 164.897 T0304.try33-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 167.486 T0304.try33-opt2.gromacs0.pdb.gz costs 0 real_cost = 167.061 T0304.try33-opt1.pdb.gz costs 0 real_cost = 162.064 T0304.try33-opt1-scwrl.pdb.gz costs 0 real_cost = 165.335 T0304.try32-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 273.751 T0304.try32-opt2.pdb.gz costs 0 real_cost = 273.92 T0304.try32-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 276.391 T0304.try32-opt2.gromacs0.pdb.gz costs 0 real_cost = 277.739 T0304.try32-opt1.pdb.gz costs 0 real_cost = 273.207 T0304.try32-opt1-scwrl.pdb.gz costs 0 real_cost = 272.464 T0304.try31-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 251.755 T0304.try31-opt2.pdb.gz costs 0 real_cost = 251.462 T0304.try31-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 245.251 T0304.try31-opt2.gromacs0.pdb.gz costs 0 real_cost = 245.577 T0304.try31-opt1.pdb.gz costs 0 real_cost = 255.671 T0304.try31-opt1-scwrl.pdb.gz costs 0 real_cost = 254.735 T0304.try30-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 203.493 T0304.try30-opt2.pdb.gz costs 0 real_cost = 200.679 T0304.try30-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 201.227 T0304.try30-opt2.gromacs0.pdb.gz costs 0 real_cost = 196.656 T0304.try30-opt1.pdb.gz costs 0 real_cost = 195.835 T0304.try30-opt1-scwrl.pdb.gz costs 0 real_cost = 194.947 T0304.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 100.468 T0304.try3-opt2.pdb.gz costs 0 real_cost = 105.582 T0304.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 105.92 T0304.try3-opt1.pdb.gz costs 0 real_cost = 110.387 T0304.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 110.012 T0304.try29-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 232.477 T0304.try29-opt2.pdb.gz costs 0 real_cost = 232.777 T0304.try29-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 226.059 T0304.try29-opt2.gromacs0.pdb.gz costs 0 real_cost = 227.134 T0304.try29-opt1.pdb.gz costs 0 real_cost = 233.234 T0304.try29-opt1-scwrl.pdb.gz costs 0 real_cost = 232.812 T0304.try28-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 313.627 T0304.try28-opt2.pdb.gz costs 0 real_cost = 310.747 T0304.try28-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 308.613 T0304.try28-opt2.gromacs0.pdb.gz costs 0 real_cost = 307.602 T0304.try28-opt1.pdb.gz costs 0 real_cost = 311.351 T0304.try28-opt1-scwrl.pdb.gz costs 0 real_cost = 313.546 T0304.try27-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 238.408 T0304.try27-opt2.pdb.gz costs 0 real_cost = 242.585 T0304.try27-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 234.303 T0304.try27-opt2.gromacs0.pdb.gz costs 0 real_cost = 240.853 T0304.try27-opt1.pdb.gz costs 0 real_cost = 237.193 T0304.try27-opt1-scwrl.pdb.gz costs 0 real_cost = 235.5 T0304.try26-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 261.881 T0304.try26-opt2.pdb.gz costs 0 real_cost = 259.269 T0304.try26-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 260.484 T0304.try26-opt2.gromacs0.pdb.gz costs 0 real_cost = 258.07 T0304.try26-opt1.pdb.gz costs 0 real_cost = 258.2 T0304.try26-opt1-scwrl.pdb.gz costs 0 real_cost = 260.65 T0304.try25-opt2.pdb.gz costs 0 real_cost = 275.78 T0304.try25-opt2.gromacs0.pdb.gz costs 0 real_cost = 277.678 T0304.try25-opt1.pdb.gz costs 0 real_cost = 278.926 T0304.try25-opt1-scwrl.pdb.gz costs 0 real_cost = 277.935 T0304.try24-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 254.412 T0304.try24-opt2.pdb.gz costs 0 real_cost = 254.722 T0304.try24-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 254.687 T0304.try24-opt2.gromacs0.pdb.gz costs 0 real_cost = 255.779 T0304.try24-opt1.pdb.gz costs 0 real_cost = 253.332 T0304.try24-opt1-scwrl.pdb.gz costs 0 real_cost = 251.26 T0304.try23-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 262.123 T0304.try23-opt2.pdb.gz costs 0 real_cost = 258.569 T0304.try23-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 259.906 T0304.try23-opt2.gromacs0.pdb.gz costs 0 real_cost = 261.098 T0304.try23-opt1.pdb.gz costs 0 real_cost = 259.38 T0304.try23-opt1-scwrl.pdb.gz costs 0 real_cost = 261.455 T0304.try22-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 216.773 T0304.try22-opt2.pdb.gz costs 0 real_cost = 212.042 T0304.try22-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 221.884 T0304.try22-opt2.gromacs0.pdb.gz costs 0 real_cost = 215.86 T0304.try22-opt1.pdb.gz costs 0 real_cost = 214.396 T0304.try22-opt1-scwrl.pdb.gz costs 0 real_cost = 214.253 T0304.try21-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 230.301 T0304.try21-opt2.pdb.gz costs 0 real_cost = 226.492 T0304.try21-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 233.877 T0304.try21-opt2.gromacs0.pdb.gz costs 0 real_cost = 225.71 T0304.try21-opt1.pdb.gz costs 0 real_cost = 227.408 T0304.try21-opt1-scwrl.pdb.gz costs 0 real_cost = 233.539 T0304.try20-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 260.194 T0304.try20-opt2.pdb.gz costs 0 real_cost = 255.425 T0304.try20-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 262.289 T0304.try20-opt2.gromacs0.pdb.gz costs 0 real_cost = 258.803 T0304.try20-opt1.pdb.gz costs 0 real_cost = 253.171 T0304.try20-opt1-scwrl.pdb.gz costs 0 real_cost = 254.134 T0304.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 158.072 T0304.try2-opt2.pdb.gz costs 0 real_cost = 159.18 T0304.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 161.643 T0304.try2-opt1.pdb.gz costs 0 real_cost = 155.599 T0304.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 155.996 T0304.try19-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 199.697 T0304.try19-opt2.pdb.gz costs 0 real_cost = 196.408 T0304.try19-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 196.64 T0304.try19-opt2.gromacs0.pdb.gz costs 0 real_cost = 194.817 T0304.try19-opt1.pdb.gz costs 0 real_cost = 191.607 T0304.try19-opt1-scwrl.pdb.gz costs 0 real_cost = 193.22 T0304.try18-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 207.365 T0304.try18-opt2.pdb.gz costs 0 real_cost = 206.864 T0304.try18-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 212.891 T0304.try18-opt2.gromacs0.pdb.gz costs 0 real_cost = 212.739 T0304.try18-opt1.pdb.gz costs 0 real_cost = 204.54 T0304.try18-opt1-scwrl.pdb.gz costs 0 real_cost = 203.898 T0304.try17-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 163.425 T0304.try17-opt2.pdb.gz costs 0 real_cost = 161.052 T0304.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 166.188 T0304.try17-opt2.gromacs0.pdb.gz costs 0 real_cost = 166.112 T0304.try17-opt1.pdb.gz costs 0 real_cost = 168.545 T0304.try17-opt1-scwrl.pdb.gz costs 0 real_cost = 169.77 T0304.try16-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 288.356 T0304.try16-opt2.pdb.gz costs 0 real_cost = 290.925 T0304.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 292.074 T0304.try16-opt2.gromacs0.pdb.gz costs 0 real_cost = 291.003 T0304.try16-opt1.pdb.gz costs 0 real_cost = 290.024 T0304.try16-opt1-scwrl.pdb.gz costs 0 real_cost = 286.87 T0304.try14-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 268.55 T0304.try14-opt2.pdb.gz costs 0 real_cost = 269.832 T0304.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = 265.874 T0304.try14-opt2.gromacs0.pdb.gz costs 0 real_cost = 269.685 T0304.try14-opt1.pdb.gz costs 0 real_cost = 264.427 T0304.try14-opt1-scwrl.pdb.gz costs 0 real_cost = 264.246 T0304.try13-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 256.415 T0304.try13-opt2.pdb.gz costs 0 real_cost = 256.355 T0304.try13-opt2.gromacs0.pdb.gz costs 0 real_cost = 259.721 T0304.try13-opt1.pdb.gz costs 0 real_cost = 256.714 T0304.try13-opt1-scwrl.pdb.gz costs 0 real_cost = 256.546 T0304.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 308.684 T0304.try12-opt2.pdb.gz costs 0 real_cost = 308.718 T0304.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = 309.286 T0304.try12-opt1.pdb.gz costs 0 real_cost = 308.92 T0304.try12-opt1-scwrl.pdb.gz costs 0 real_cost = 307.603 T0304.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 275.247 T0304.try11-opt2.pdb.gz costs 0 real_cost = 274.541 T0304.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = 278.062 T0304.try11-opt1.pdb.gz costs 0 real_cost = 274.506 T0304.try11-opt1-scwrl.pdb.gz costs 0 real_cost = 272.894 T0304.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 234.938 T0304.try10-opt2.pdb.gz costs 0 real_cost = 235.533 T0304.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = 241.311 T0304.try10-opt1.pdb.gz costs 0 real_cost = 236.792 T0304.try10-opt1-scwrl.pdb.gz costs 0 real_cost = 234.518 T0304.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 314.859 T0304.try1-opt2.pdb.gz costs 0 real_cost = 315.291 T0304.try1-opt1.pdb.gz costs 0 real_cost = 315.976 T0304.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 314.993 ../model5.ts-submitted costs 0 real_cost = 276.662 ../model4.ts-submitted costs 0 real_cost = 273.953 ../model3.ts-submitted costs 0 real_cost = 248.928 ../model2.ts-submitted costs 0 real_cost = 254.739 ../model1.ts-submitted costs 0 real_cost = 264.091 align5 costs 0 real_cost = 312.112 align4 costs 0 real_cost = 436.037 align3 costs 0 real_cost = 327.841 align2 costs 0 real_cost = 333.183 align1 costs 0 real_cost = 340.827 T0304.try1-opt2.pdb costs 0 real_cost = 315.291 model5-scwrl costs 0 real_cost = 278.588 model5.ts-submitted costs 0 real_cost = 276.662 model4-scwrl costs 0 real_cost = 272.893 model4.ts-submitted costs 0 real_cost = 273.953 model3-scwrl costs 0 real_cost = 248.056 model3.ts-submitted costs 0 real_cost = 248.928 model2-scwrl costs 0 real_cost = 251.842 model2.ts-submitted costs 0 real_cost = 254.739 model1-scwrl costs 0 real_cost = 264.56 model1.ts-submitted costs 0 real_cost = 264.092 T0304_1.real.pdb costs 0 real_cost = -863 # command:CPU_time= 243.143 sec, elapsed time= 389.106 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty