# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gumA 222 3.05e-01 1pgtA a.45.1.1,c.47.1.5 17683,32977 1gulA 222 3.05e-01 1pgtA a.45.1.1,c.47.1.5 17675,32969 1rybA 212 2.41e+00 c.56.3.1 98098 1gzqA 300 3.63e+00 b.1.1.2,d.19.1.1 70818,70819 1womA 271 4.79e+00 1gseA 221 4.80e+00 1pgtA a.45.1.1,c.47.1.5 17667,32961 1k3lA 221 4.99e+00 a.45.1.1,c.47.1.5 77229,77230 1k3yA 221 4.99e+00 a.45.1.1,c.47.1.5 77245,77246 1v7cA 351 5.39e+00 c.79.1.1 100446 2gaiA 633 7.23e+00 1k3bA 119 8.92e+00 b.61.5.1 72016 1awo 62 8.98e+00 1bbzA b.34.2.1 24482 1vpkA 378 9.49e+00 1qxrA 189 9.53e+00 b.82.1.7 96552 1f3aA 222 1.12e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1x82A 190 1.20e+01 1phk 298 1.55e+01 1cdkA d.144.1.7 41635 2c0cA 362 1.58e+01 1plfA 72 1.63e+01 1tvxA d.9.1.1 37373 1hnjA 317 1.75e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1i1qA 520 1.80e+01 1qdlA d.161.1.1 61543 1t9mA 214 1.89e+01 6gsvA 217 1.92e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1wurA 220 1.92e+01 1rypB 250 1.95e+01 1rypB d.153.1.4 41933 1hn9A 317 1.98e+01 1hn9A c.95.1.2,c.95.1.2 35977,35978 1zowA 313 2.08e+01 1eblB 317 2.12e+01 1hn9A c.95.1.2,c.95.1.2 35975,35976 1eblA 317 2.31e+01 1hn9A c.95.1.2,c.95.1.2 35973,35974 1kaeA 434 2.38e+01 c.82.1.2 72247 1k75A 434 2.39e+01 c.82.1.2 68253 1vhmA 195 2.47e+01 d.110.2.1 100691 1y74A 57 2.53e+01 1u69A 163 2.70e+01 d.32.1.7 107699 1kl7A 514 2.81e+01 c.79.1.1 72678 1vd3A 217 2.83e+01 1b5sA 242 2.94e+01 1eaf c.43.1.1 32626 1sfxA 109 2.94e+01 a.4.5.50 105505 1bbzE 58 2.95e+01 1bbzA b.34.2.1 24479 1y75A 118 3.02e+01 2c4jA 218 3.08e+01 1bbzA 58 3.13e+01 1bbzA b.34.2.1 24477 1cf4B 44 3.30e+01 1cf4B 1khoA 370 3.33e+01 a.124.1.1,b.12.1.3 72489,72490 1cojA 212 3.45e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1lj2A 110 3.51e+01 h.1.13.2 73926 1on0A 158 3.53e+01 d.108.1.1 87095 2b33A 140 3.54e+01 1b8xA 280 3.55e+01 1b8xA a.45.1.1,c.47.1.5 17739,33033 1go4E 100 3.66e+01 h.1.22.1 70296 1p6xA 334 3.69e+01 c.37.1.1 94195 1iv8A 720 3.80e+01 b.71.1.1,c.1.8.1 76842,76843 1wwpA 119 3.86e+01 1z9lA 128 3.89e+01 1vf1A 229 3.90e+01 1x3cA 73 3.94e+01 1ufhA 180 3.97e+01 d.108.1.1 88485 1y08A 323 3.98e+01 2aorA 223 4.29e+01 2etjA 250 4.36e+01 1acf 125 4.55e+01 3nul d.110.1.1 40882 1rw2A 152 4.57e+01 a.118.19.1 97961 1e1hA 287 4.63e+01 d.92.1.7 83167 1g0u1 266 4.64e+01 1st9A 143 4.67e+01 c.47.1.10 98987 1ho8A 480 4.71e+01 1ho8A a.118.1.9 61107 1lba 146 4.93e+01 1lba d.118.1.1 41062 1otgA 125 5.02e+01 1otgA d.80.1.2 39831 1xd7A 145 5.11e+01 a.4.5.55 109566 1yoaA 159 5.15e+01 2f9sA 151 5.21e+01 1aboA 62 5.30e+01 1bbzA b.34.2.1 24474 1yq5A 144 5.39e+01 1z6oM 191 5.45e+01 1sdoA 203 5.45e+01 c.52.1.21 98809 1t7vA 278 5.50e+01 1aroL 151 5.70e+01 1lba d.118.1.1 41063 1wgbA 159 5.72e+01 1vcdA 126 5.78e+01 1k4nA 192 5.83e+01 d.32.1.5 72059 1q2zA 120 5.92e+01 a.118.19.1 95656 1k1xA 659 6.21e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1wucA 250 6.22e+01 1onqA 283 6.22e+01 b.1.1.2,d.19.1.1 93365,93366 1rktA 205 6.34e+01 a.4.1.9,a.121.1.1 97623,97624 1avoA 60 6.34e+01 1avoA a.24.8.1 16619 1fqvA 336 6.40e+01 1fqvA a.158.1.1,c.10.1.3 19254,30856 1ca1 370 6.40e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1ee8A 266 6.56e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1i50B 1224 6.60e+01 e.29.1.1 61755 1jjyA 636 6.70e+01 1jjyA 1efnB 152 6.72e+01 1efnB d.102.1.1 40699 1xw5A 217 6.76e+01 1hzpA 335 6.89e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 1rgxA 114 7.14e+01 g.77.1.1 104932 1c6vX 81 7.19e+01 1ihvA b.34.7.1 24641 1sspE 223 7.19e+01 3eugA c.18.1.1 31009 1akz 223 7.23e+01 3eugA c.18.1.1 31007 1zl8A 53 7.23e+01 1uesA 191 7.31e+01 a.2.11.1,d.44.1.1 107798,107799 1apq 53 7.38e+01 1apq g.3.11.1 44324 1u6eA 335 7.38e+01 1su8A 636 7.42e+01 e.26.1.2 98999 2ae6A 166 7.65e+01 1ok0A 74 7.77e+01 b.5.1.1 93191 1oktA 211 7.83e+01 a.45.1.1,c.47.1.5 93272,93273 5p21 166 7.91e+01 1ctqA c.37.1.8 31966 1r77A 103 8.04e+01 1go3E 187 8.07e+01 b.40.4.5,d.230.1.1 83054,83055 1jh6A 189 8.27e+01 d.61.1.1 66707 1v5dA 386 8.35e+01 1ihfB 94 8.40e+01 1huuA a.55.1.1 17894 1uunA 184 8.41e+01 f.6.1.2 100012 1x4rA 99 8.46e+01 1hoe 74 8.47e+01 1hoe b.5.1.1 22833 1liaA 164 8.49e+01 1cpcA a.1.1.3 15661 1wyuB 474 8.49e+01 1yr2A 741 8.53e+01 1n13B 113 8.62e+01 1gkxA 388 8.63e+01 a.29.5.1,d.122.1.4 65266,65267 1tu7A 208 8.81e+01 1ctqA 166 8.83e+01 1ctqA c.37.1.8 31965