# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gulA 222 8.60e-01 1pgtA a.45.1.1,c.47.1.5 17675,32969 1gumA 222 1.05e+00 1pgtA a.45.1.1,c.47.1.5 17683,32977 1fjrA 195 1.23e+00 1fjrA b.102.1.1 59855 1womA 271 2.20e+00 1rybA 212 2.28e+00 c.56.3.1 98098 1bpe 335 4.42e+00 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1ld4M 439 4.64e+00 i.6.1.1 77898 1b4uA 139 6.92e+00 1bouA a.88.1.1 18523 1bouA 139 7.97e+00 1bouA a.88.1.1 18521 1h9sA 140 8.29e+00 1b9mA b.40.6.2,b.40.6.2 60843,60844 1e3dB 542 9.78e+00 1h2rL e.18.1.1 59189 2ae6A 166 1.05e+01 2sas 185 1.11e+01 2sas a.39.1.5 17258 1qbzA 123 1.17e+01 1qbzA h.3.2.1 45729 1uunA 184 1.18e+01 f.6.1.2 100012 1rwtA 232 1.50e+01 f.43.1.1 97992 2gboA 104 1.86e+01 2fbwC 141 1.89e+01 1g8lA 411 1.96e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1g13A 162 2.05e+01 1g13A b.95.1.1 60194 2ag9A 164 2.32e+01 1mgsA 73 2.38e+01 1tvxA d.9.1.1 37389 1a5t 334 2.45e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 2ag4A 164 2.45e+01 1gkzA 388 2.57e+01 a.29.5.1,d.122.1.4 65268,65269 1vhmA 195 2.57e+01 d.110.2.1 100691 1i42A 89 2.59e+01 1jruA d.15.1.2 61651 1pu5A 164 2.59e+01 b.95.1.1 104310 3phy 125 2.64e+01 3pyp d.110.3.1 40904 1n0uA 842 2.80e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1jb1A 205 2.83e+01 1jb1A c.91.1.2 62832 1lj2A 110 2.85e+01 h.1.13.2 73926 3pyp 125 2.99e+01 3pyp d.110.3.1 40897 1ho8A 480 2.99e+01 1ho8A a.118.1.9 61107 1gzqA 300 3.01e+01 b.1.1.2,d.19.1.1 70818,70819 1b9mA 265 3.06e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1eia 207 3.11e+01 1eia a.28.3.1,a.73.1.1 16951,18331 2bjfA 329 3.15e+01 1xd7A 145 3.16e+01 a.4.5.55 109566 1jruA 89 3.16e+01 1jruA d.15.1.2 63257 1q2zA 120 3.43e+01 a.118.19.1 95656 1rw2A 152 3.52e+01 a.118.19.1 97961 1w8kA 447 3.54e+01 1csyA 112 3.60e+01 1lckA d.93.1.1 40519 1dugA 234 3.61e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1pujA 282 3.65e+01 c.37.1.8 88294 1qceA 123 3.65e+01 1qbzC h.3.2.1 45750 1whuA 104 3.68e+01 1gkxA 388 3.73e+01 a.29.5.1,d.122.1.4 65266,65267 2phy 125 3.80e+01 3pyp d.110.3.1 40901 1i1qA 520 3.90e+01 1qdlA d.161.1.1 61543 2f9lA 199 3.93e+01 1d7mA 101 3.96e+01 1d7mA h.1.10.1 45628 1mun 225 3.98e+01 1mun a.96.1.2 18744 1muyA 225 4.03e+01 1mun a.96.1.2 18745 1y74A 57 4.08e+01 2ahjC 206 4.10e+01 2ahjA d.149.1.1 41773 2cz1A 206 4.14e+01 1qqeA 292 4.24e+01 1qqeA a.118.8.1 19210 1t3lA 337 4.30e+01 b.34.2.1,c.37.1.1 106358,106359 1gw5A 621 4.34e+01 a.118.1.10 70629 1uqvA 85 4.47e+01 a.60.1.2 99798 1ituA 369 4.49e+01 c.1.9.7 71423 1jr3E 334 4.55e+01 a.80.1.1,c.37.1.20 63253,63254 1aroL 151 4.65e+01 1lba d.118.1.1 41063 2ahjA 206 4.69e+01 2ahjA d.149.1.1 41772 1nwzA 125 4.74e+01 d.110.3.1 86370 1ahjA 207 4.89e+01 2ahjA d.149.1.1 41774 1xrkA 124 4.90e+01 1lba 146 5.01e+01 1lba d.118.1.1 41062 2a0kA 161 5.12e+01 1vcdA 126 5.17e+01 1vorW 173 5.18e+01 1awo 62 5.20e+01 1bbzA b.34.2.1 24482 1vlpA 441 5.36e+01 d.41.2.2,d.41.2.3 108840,108841 1kqwA 134 5.41e+01 b.60.1.2 72887 1ubkL 534 5.43e+01 e.18.1.1 88422 1h2rL 534 5.45e+01 1h2rL e.18.1.1 43298 1wwpA 119 5.54e+01 2f2tA 161 5.58e+01 1cdzA 96 5.74e+01 1cdzA c.15.1.1 30925 1xw8A 252 5.76e+01 1wuiL 534 5.83e+01 1n4qB 377 6.03e+01 a.102.4.3 91636 1wkoA 180 6.07e+01 1bbzA 58 6.08e+01 1bbzA b.34.2.1 24477 1bbzE 58 6.09e+01 1bbzA b.34.2.1 24479 2f62A 161 6.19e+01 1vyfA 135 6.31e+01 b.60.1.2 108902 1avqA 228 6.52e+01 1avqA c.52.1.13 33326 1dk2A 86 6.65e+01 1bpyA a.60.6.1 18078 1b8xA 280 6.73e+01 1b8xA a.45.1.1,c.47.1.5 17739,33033 1s28A 132 6.94e+01 d.198.1.1 105223 1gw0A 559 6.99e+01 b.6.1.3,b.6.1.3,b.6.1.3 70623,70624,70625 1h2aL 567 7.01e+01 1h2rL e.18.1.1 43299 1aboA 62 7.15e+01 1bbzA b.34.2.1 24474 1plfA 72 7.50e+01 1tvxA d.9.1.1 37373 1i52A 236 7.54e+01 1i52A c.68.1.13 61767 1zoyC 140 7.70e+01 1wb9A 800 8.01e+01 1lmzA 187 8.09e+01 a.96.1.4 74037 1ffkQ 119 8.09e+01 1ffkQ b.34.5.1 24605 1ireA 204 8.26e+01 d.149.1.1 76769 1ugpA 203 8.32e+01 d.149.1.1 107831 1r4xA 275 8.48e+01 b.1.10.3,d.105.1.2 97054,97055 1yj7A 171 8.50e+01 1jr5A 90 8.59e+01 a.150.1.1 67113 1yh3A 256 8.65e+01 1kkcA 221 8.67e+01 a.2.11.1,d.44.1.1 68660,68661 1m70A 190 8.73e+01 a.3.1.4,a.3.1.4 91200,91201 1avoA 60 8.81e+01 1avoA a.24.8.1 16619 1ifc 132 8.90e+01 b.60.1.2 27173 1tu7A 208 8.92e+01 1b7yA 350 8.97e+01 1pysA d.104.1.1 40776