# List of top-scoring protein chains for T0304.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gulA 222 9.59e-01 1pgtA a.45.1.1,c.47.1.5 17675,32969 1womA 271 1.53e+00 1z8yB 89 1.63e+00 1h9sB 140 2.25e+00 b.40.6.2,b.40.6.2 60845,60846 1h9sA 140 2.32e+00 1b9mA b.40.6.2,b.40.6.2 60843,60844 1df7A 159 3.41e+00 3dfr c.71.1.1 34885 2ae6A 166 3.53e+00 2cigA 159 4.14e+00 1wk2A 121 5.56e+00 1o7lA 262 8.31e+00 a.4.5.8,b.40.6.2,b.40.6.2 81147,81148,81149 1b9mA 265 8.33e+00 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1zemA 262 8.33e+00 1u69A 163 9.10e+00 d.32.1.7 107699 1yq1A 208 1.31e+01 1ld4M 439 1.85e+01 i.6.1.1 77898 1sdoA 203 1.87e+01 c.52.1.21 98809 1pl8A 356 1.91e+01 b.35.1.2,c.2.1.1 94878,94879 1mqbA 333 2.07e+01 d.144.1.7 91392 1b9bA 255 2.37e+01 1amk c.1.1.1 28531 1xd7A 145 2.56e+01 a.4.5.55 109566 1gsa 316 3.14e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 2fheA 216 3.25e+01 1b8xA a.45.1.1,c.47.1.5 17724,33018 1t35A 191 3.29e+01 c.129.1.1 99108 1glv 303 3.32e+01 1gsa c.30.1.3,d.142.1.1 31721,41480 1lj2A 110 3.36e+01 h.1.13.2 73926 1m70A 190 3.42e+01 a.3.1.4,a.3.1.4 91200,91201 1whqA 99 3.45e+01 1lba 146 3.47e+01 1lba d.118.1.1 41062 1aroL 151 3.52e+01 1lba d.118.1.1 41063 1vk8A 106 3.54e+01 d.58.48.1 108636 1kkcA 221 3.60e+01 a.2.11.1,d.44.1.1 68660,68661 1sbqA 189 3.95e+01 c.124.1.6 105412 2bmeA 186 3.99e+01 1qnxA 209 4.05e+01 1qnxA d.111.1.1 40914 1rodA 72 4.16e+01 1tvxA d.9.1.1 37395 2phkA 277 4.53e+01 1cdkA d.144.1.7 41637 1i42A 89 4.73e+01 1jruA d.15.1.2 61651 1plfA 72 4.76e+01 1tvxA d.9.1.1 37373 1l3lA 234 4.78e+01 a.4.6.2,d.110.5.1 73541,73542 1ql6A 298 4.90e+01 1cdkA d.144.1.7 41636 1ea0A 1479 4.93e+01 b.80.4.1,c.1.4.1,d.153.1.1 64854,64855,64856 2ashA 381 5.01e+01 1phk 298 5.03e+01 1cdkA d.144.1.7 41635 1w8kA 447 5.12e+01 1ee8A 266 5.22e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1rybA 212 5.53e+01 c.56.3.1 98098 1xrkA 124 5.55e+01 1rymA 212 5.64e+01 c.56.3.1 98106 1rynA 202 5.64e+01 c.56.3.1 98107 1wyuB 474 5.68e+01 1s3sG 127 6.20e+01 d.15.1.2 98457 1ji1A 637 6.28e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1izkA 637 6.28e+01 b.1.18.2,b.71.1.1,c.1.8.1 83844,83845,83846 1uh4A 637 6.28e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1izjA 637 6.31e+01 b.1.18.2,b.71.1.1,c.1.8.1 83841,83842,83843 1gg4A 452 6.39e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1kg7A 225 6.79e+01 a.96.1.2 77383 1ryp2 233 6.87e+01 1ryp2 1y74A 57 6.88e+01 1ituA 369 6.89e+01 c.1.9.7 71423 2gc1A 188 6.98e+01 2gnnA 127 7.05e+01 1qxrA 189 7.06e+01 b.82.1.7 96552 1x82A 190 7.09e+01 1cdh 178 7.40e+01 1cdy b.1.1.1,b.1.1.3 19722,21661 1mun 225 7.41e+01 1mun a.96.1.2 18744 1cdi 179 7.42e+01 1cdy b.1.1.1,b.1.1.3 19727,21666 2b4cC 181 7.49e+01 1kg4A 225 7.50e+01 a.96.1.2 77380 3cd4 182 7.51e+01 1cdy b.1.1.1,b.1.1.3 19720,21659 1kg2A 225 7.54e+01 a.96.1.2 77378 1rzjC 185 7.55e+01 b.1.1.1,b.1.1.3 98198,98199 1kg6A 225 7.56e+01 a.96.1.2 77382 1weiA 225 7.57e+01 a.96.1.2 109339 1cdy 178 7.77e+01 1cdy b.1.1.1,b.1.1.3 19719,21658 1kg5A 225 7.80e+01 a.96.1.2 77381 1cdu 178 7.87e+01 1cdy b.1.1.1,b.1.1.3 19723,21662 1kqjA 225 7.88e+01 a.96.1.2 72879 1ny9A 143 8.19e+01 a.181.1.1 86401 1rwtA 232 8.37e+01 f.43.1.1 97992 1c7dA 284 8.62e+01 1abwA a.1.1.2,a.1.1.2 15278,15279 1uunA 184 8.63e+01 f.6.1.2 100012 1z6oM 191 8.74e+01 1knvA 293 8.79e+01 c.52.1.7 68707 1kl7A 514 8.79e+01 c.79.1.1 72678 1kkmA 205 8.88e+01 c.91.1.2 72654