# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1womA 271 1.22e+00 1v7cA 351 3.19e+00 c.79.1.1 100446 2gaiA 633 5.21e+00 1bupA 386 5.84e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1vcdA 126 6.16e+00 1u20A 212 6.17e+00 1x82A 190 6.22e+00 1wyuB 474 7.10e+00 1zemA 262 7.24e+00 1f5qB 252 7.29e+00 1f5qB a.74.1.1,a.74.1.1 18362,18363 1sdoA 203 7.45e+00 c.52.1.21 98809 1st9A 143 8.37e+00 c.47.1.10 98987 1rybA 212 8.43e+00 c.56.3.1 98098 2f9sA 151 8.58e+00 1k4nA 192 9.53e+00 d.32.1.5 72059 1avoA 60 9.99e+00 1avoA a.24.8.1 16619 1vpkA 378 1.03e+01 1y74A 57 1.12e+01 1i1qA 520 1.13e+01 1qdlA d.161.1.1 61543 1lj2A 110 1.58e+01 h.1.13.2 73926 1e1hA 287 1.63e+01 d.92.1.7 83167 1k3yA 221 1.81e+01 a.45.1.1,c.47.1.5 77245,77246 1e3dB 542 1.84e+01 1h2rL e.18.1.1 59189 2f9lA 199 2.05e+01 1yqbA 100 2.25e+01 1hnjA 317 2.25e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1ee8A 266 2.36e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2aioA 269 2.45e+01 1xmbA 418 2.56e+01 1yyaA 250 2.57e+01 1pb1A 416 2.57e+01 c.77.1.1 88014 1ca1 370 2.59e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1khoA 370 2.59e+01 a.124.1.1,b.12.1.3 72489,72490 1v9yA 167 2.63e+01 d.110.3.2 108454 1xd7A 145 2.64e+01 a.4.5.55 109566 1on0A 158 2.66e+01 d.108.1.1 87095 1iv8A 720 2.72e+01 b.71.1.1,c.1.8.1 76842,76843 2bkrA 212 2.75e+01 1df7A 159 2.82e+01 3dfr c.71.1.1 34885 1k3bA 119 2.91e+01 b.61.5.1 72016 1vpjA 192 2.97e+01 1q2zA 120 3.01e+01 a.118.19.1 95656 1go3E 187 3.02e+01 b.40.4.5,d.230.1.1 83054,83055 1bbzA 58 3.07e+01 1bbzA b.34.2.1 24477 1z9lA 128 3.11e+01 1uvjA 664 3.22e+01 e.8.1.6 100045 2msbA 115 3.29e+01 1rtm1 d.169.1.1 42355 1o3yA 166 3.36e+01 c.37.1.8 86618 1wwpA 119 3.36e+01 1cojA 212 3.40e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1ryp2 233 3.49e+01 1ryp2 1z6oM 191 3.58e+01 1kaeA 434 3.63e+01 c.82.1.2 72247 1zowA 313 3.68e+01 1bu6O 501 3.70e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1atzA 189 3.79e+01 1atzA c.62.1.1 34132 1ppjJ 62 4.12e+01 f.23.14.1 104266 1u69A 163 4.27e+01 d.32.1.7 107699 2bolA 314 4.41e+01 1cf4B 44 4.53e+01 1cf4B 1ox0A 430 4.59e+01 c.95.1.1,c.95.1.1 87495,87496 1zc6A 305 4.67e+01 1r77A 103 4.67e+01 1zccA 248 4.67e+01 2etjA 250 4.68e+01 2bmeA 186 4.72e+01 1mg4A 113 4.92e+01 d.15.11.1 84953 1wucA 250 5.13e+01 1v2xA 194 5.15e+01 c.116.1.1 100274 1xrjA 261 5.17e+01 1r8sA 164 5.25e+01 c.37.1.8 97247 1itxA 419 5.44e+01 c.1.8.5,d.26.3.1 71425,71426 1w0hA 204 5.45e+01 1w8kA 447 5.49e+01 1c6vX 81 5.56e+01 1ihvA b.34.7.1 24641 1xeeA 91 5.60e+01 1mw7A 240 5.71e+01 e.39.1.1 79557 1gg4A 452 5.90e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1ok0A 74 5.94e+01 b.5.1.1 93191 1rypC 244 6.03e+01 1rypC d.153.1.4 41934 1ysjA 404 6.13e+01 1uunA 184 6.18e+01 f.6.1.2 100012 1wqgA 185 6.22e+01 1o0sA 605 6.24e+01 c.2.1.7,c.58.1.3 86540,86541 1m70A 190 6.26e+01 a.3.1.4,a.3.1.4 91200,91201 1opc 110 6.33e+01 1opc a.4.6.1 16231 1x4rA 99 6.35e+01 1cg2A 393 6.41e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1wchA 315 6.78e+01 1v5dA 386 6.83e+01 1t71A 281 6.85e+01 1tqyA 424 6.89e+01 c.95.1.1,c.95.1.1 107245,107246 1r2zA 274 6.89e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1lxjA 104 6.96e+01 d.58.48.1 84736 256bA 106 7.23e+01 256bA a.24.3.1 16539 2fnjB 118 7.27e+01 1dl5A 317 7.34e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1t0hA 132 7.55e+01 b.34.2.1 106207 1twfB 1224 7.57e+01 1n13B 113 7.63e+01 1h1nA 305 7.71e+01 c.1.8.3 70855 1d0cA 444 8.01e+01 d.174.1.1 64769 1yoaA 159 8.15e+01 1dzfA 215 8.21e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1f02T 66 8.25e+01 1f02T j.67.1.1 46360 1acf 125 8.28e+01 3nul d.110.1.1 40882 1rktA 205 8.31e+01 a.4.1.9,a.121.1.1 97623,97624 1xrkA 124 8.39e+01 1yndA 165 8.55e+01 1wk2A 121 8.65e+01 1vkwA 218 8.76e+01 d.90.1.2 108695 1vjeA 166 8.77e+01 d.185.1.2 100807 1ev0A 58 8.80e+01 1ev0A d.71.1.1 39594 1wwlA 312 8.89e+01 2al3A 90 8.97e+01 1l5wA 796 8.98e+01 c.87.1.4 73605