# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1womA 271 6.58e-01 1rybA 212 1.31e+00 c.56.3.1 98098 2gaiA 633 2.25e+00 1k3bA 119 3.67e+00 b.61.5.1 72016 1x82A 190 5.15e+00 1k3yA 221 5.25e+00 a.45.1.1,c.47.1.5 77245,77246 1v7cA 351 6.39e+00 c.79.1.1 100446 1e1hA 287 7.55e+00 d.92.1.7 83167 1vpkA 378 7.74e+00 1sdoA 203 8.85e+00 c.52.1.21 98809 1i1qA 520 9.81e+00 1qdlA d.161.1.1 61543 1lj2A 110 1.02e+01 h.1.13.2 73926 1ee8A 266 1.03e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1hnjA 317 1.07e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1zemA 262 1.14e+01 1xd7A 145 1.24e+01 a.4.5.55 109566 1go3E 187 1.26e+01 b.40.4.5,d.230.1.1 83054,83055 1zowA 313 1.27e+01 1y74A 57 1.30e+01 1u69A 163 1.58e+01 d.32.1.7 107699 1z9lA 128 1.60e+01 1khoA 370 1.62e+01 a.124.1.1,b.12.1.3 72489,72490 1go4E 100 1.68e+01 h.1.22.1 70296 1u20A 212 1.76e+01 1rypB 250 1.81e+01 1rypB d.153.1.4 41933 1cojA 212 1.93e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1wyuB 474 1.98e+01 1wk2A 121 2.15e+01 1st9A 143 2.21e+01 c.47.1.10 98987 1kaeA 434 2.26e+01 c.82.1.2 72247 1ysjA 404 2.28e+01 1rypC 244 2.37e+01 1rypC d.153.1.4 41934 2f9sA 151 2.47e+01 1wwpA 119 2.51e+01 1v5dA 386 2.56e+01 1q2zA 120 2.59e+01 a.118.19.1 95656 1wucA 250 2.72e+01 1otgA 125 2.76e+01 1otgA d.80.1.2 39831 1on0A 158 2.76e+01 d.108.1.1 87095 1k4nA 192 2.78e+01 d.32.1.5 72059 2msbA 115 2.98e+01 1rtm1 d.169.1.1 42355 1ok0A 74 3.00e+01 b.5.1.1 93191 1df7A 159 3.11e+01 3dfr c.71.1.1 34885 1acf 125 3.17e+01 3nul d.110.1.1 40882 1lba 146 3.23e+01 1lba d.118.1.1 41062 1cf4B 44 3.24e+01 1cf4B 1r77A 103 3.26e+01 1sluA 142 3.27e+01 1sluA b.16.1.1 23685 1v9sA 208 3.29e+01 1avoA 60 3.34e+01 1avoA a.24.8.1 16619 1ca1 370 3.42e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1z6oM 191 3.42e+01 1yr2A 741 3.46e+01 1vcdA 126 3.54e+01 1ho8A 480 3.55e+01 1ho8A a.118.1.9 61107 1vf1A 229 3.59e+01 1ylkA 172 3.72e+01 1s3sG 127 3.79e+01 d.15.1.2 98457 2etjA 250 3.91e+01 1opc 110 3.93e+01 1opc a.4.6.1 16231 1bbzA 58 4.28e+01 1bbzA b.34.2.1 24477 1jh6A 189 4.43e+01 d.61.1.1 66707 1x4rA 99 4.59e+01 1wurA 220 4.59e+01 1c6vX 81 4.84e+01 1ihvA b.34.7.1 24641 1uunA 184 4.93e+01 f.6.1.2 100012 1ryp2 233 5.07e+01 1ryp2 1zi8A 236 5.20e+01 1oktA 211 5.20e+01 a.45.1.1,c.47.1.5 93272,93273 2bmeA 186 5.22e+01 1rgxA 114 5.24e+01 g.77.1.1 104932 2azwA 148 5.42e+01 1akz 223 5.47e+01 3eugA c.18.1.1 31007 1vpjA 192 5.52e+01 1ctqA 166 5.58e+01 1ctqA c.37.1.8 31965 2g3aA 152 5.62e+01 1yoaA 159 5.73e+01 1rktA 205 5.77e+01 a.4.1.9,a.121.1.1 97623,97624 2bw8A 227 5.83e+01 1iv8A 720 5.88e+01 b.71.1.1,c.1.8.1 76842,76843 1sfxA 109 5.91e+01 a.4.5.50 105505 1aisA 182 5.97e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1u6eA 335 6.15e+01 2c4jA 218 6.24e+01 1fiwA 290 6.31e+01 5ptp 1h5qA 265 6.40e+01 1cydA c.2.1.2 60643 1f5qB 252 6.61e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1h65A 270 6.67e+01 c.37.1.8 65640 1jogA 146 6.68e+01 a.24.16.2 77142 1xn7A 78 6.80e+01 1n13B 113 7.09e+01 1ty9A 222 7.12e+01 2fd5A 180 7.13e+01 2aioA 269 7.14e+01 1w0hA 204 7.19e+01 256bA 106 7.22e+01 256bA a.24.3.1 16539 1b5l 172 7.25e+01 1b5l a.26.1.3 16900 1uteA 313 7.30e+01 1uteA d.159.1.1 42078 1oihA 301 7.31e+01 b.82.2.5 93051 1yw5A 177 7.49e+01 1td6A 306 7.52e+01 2fbyA 205 7.76e+01 1q1aA 289 7.90e+01 c.31.1.5 95561 2gw6A 123 7.99e+01 1t0hA 132 8.00e+01 b.34.2.1 106207 2ddrA 306 8.02e+01 1l3lA 234 8.18e+01 a.4.6.2,d.110.5.1 73541,73542 1vjeA 166 8.28e+01 d.185.1.2 100807 1g3mA 294 8.58e+01 c.37.1.5 83268 2ae6A 166 8.60e+01 1s6bA 119 8.77e+01 a.133.1.2 98592 2f71A 298 8.83e+01 1vd3A 217 8.98e+01