# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1womA 271 8.58e-02 1wyuB 474 8.35e-01 1cojA 212 1.01e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 1sdoA 203 1.34e+00 c.52.1.21 98809 2gaiA 633 1.56e+00 1zowA 313 2.00e+00 1rybA 212 2.55e+00 c.56.3.1 98098 1zemA 262 2.83e+00 1hnjA 317 3.03e+00 1hn9A c.95.1.2,c.95.1.2 35969,35970 2f9lA 199 3.22e+00 1u20A 212 3.38e+00 1x82A 190 4.49e+00 1vpkA 378 5.65e+00 2fd5A 180 5.68e+00 1v7cA 351 5.79e+00 c.79.1.1 100446 1r77A 103 6.44e+00 1df7A 159 6.81e+00 3dfr c.71.1.1 34885 2g3aA 152 7.24e+00 1bbzA 58 7.48e+00 1bbzA b.34.2.1 24477 1kaeA 434 7.81e+00 c.82.1.2 72247 1otgA 125 7.95e+00 1otgA d.80.1.2 39831 1v5dA 386 7.98e+00 1e1hA 287 8.16e+00 d.92.1.7 83167 1i1qA 520 8.35e+00 1qdlA d.161.1.1 61543 1ysjA 404 9.60e+00 1rypC 244 9.83e+00 1rypC d.153.1.4 41934 1u6eA 335 1.03e+01 1vcdA 126 1.04e+01 1wk2A 121 1.11e+01 1avoA 60 1.14e+01 1avoA a.24.8.1 16619 1go4E 100 1.16e+01 h.1.22.1 70296 1f5qB 252 1.17e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1trb 320 1.20e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1go3E 187 1.23e+01 b.40.4.5,d.230.1.1 83054,83055 1gpmA 525 1.23e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1yiyA 429 1.23e+01 2bmeA 186 1.25e+01 1lj2A 110 1.26e+01 h.1.13.2 73926 2msbA 115 1.28e+01 1rtm1 d.169.1.1 42355 1z9lA 128 1.31e+01 1xd7A 145 1.33e+01 a.4.5.55 109566 1yizA 429 1.34e+01 1b8oA 284 1.35e+01 1b8oA c.56.2.1 33762 1wqgA 185 1.36e+01 1on0A 158 1.39e+01 d.108.1.1 87095 1xeeA 91 1.44e+01 1bupA 386 1.46e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1k4nA 192 1.50e+01 d.32.1.5 72059 1y74A 57 1.55e+01 1ee8A 266 1.61e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1st9A 143 1.62e+01 c.47.1.10 98987 1atzA 189 1.63e+01 1atzA c.62.1.1 34132 2bw8A 227 1.66e+01 1yr2A 741 1.69e+01 1lba 146 1.72e+01 1lba d.118.1.1 41062 1v9yA 167 1.78e+01 d.110.3.2 108454 1q52A 314 1.86e+01 c.14.1.3 95846 2f9sA 151 1.88e+01 2f71A 298 2.01e+01 2cs7A 55 2.13e+01 1yyaA 250 2.20e+01 1bed 181 2.25e+01 1fvkA c.47.1.13 90330 1dl5A 317 2.26e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1vbiA 344 2.33e+01 1u69A 163 2.35e+01 d.32.1.7 107699 1ho8A 480 2.40e+01 1ho8A a.118.1.9 61107 1wvfA 520 2.43e+01 1acf 125 2.45e+01 3nul d.110.1.1 40882 1k3bA 119 2.46e+01 b.61.5.1 72016 1cf4B 44 2.47e+01 1cf4B 1sluA 142 2.50e+01 1sluA b.16.1.1 23685 1e3dB 542 2.59e+01 1h2rL e.18.1.1 59189 1yw5A 177 2.59e+01 1y9lA 115 2.60e+01 1i19A 561 2.62e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1c6vX 81 2.69e+01 1ihvA b.34.7.1 24641 1avqA 228 2.81e+01 1avqA c.52.1.13 33326 1ctqA 166 2.99e+01 1ctqA c.37.1.8 31965 2azwA 148 3.05e+01 1lqtA 456 3.05e+01 c.3.1.1,c.4.1.1 74198,74199 1td6A 306 3.12e+01 2fbyA 205 3.16e+01 1pa1A 310 3.19e+01 c.45.1.2 94404 2bolA 314 3.24e+01 1uteA 313 3.32e+01 1uteA d.159.1.1 42078 1fiwA 290 3.36e+01 5ptp 1g3mA 294 3.41e+01 c.37.1.5 83268 1qwtA 255 3.44e+01 b.26.1.3 96501 1rktA 205 3.47e+01 a.4.1.9,a.121.1.1 97623,97624 1wwpA 119 3.53e+01 1zd9A 188 3.54e+01 1xrjA 261 3.54e+01 1g5aA 628 3.56e+01 b.71.1.1,c.1.8.1 65152,65153 1ifqA 138 3.56e+01 1ifqA d.110.4.1 62350 1txoA 237 3.67e+01 1w0hA 204 3.73e+01 1pf5A 131 3.79e+01 d.79.1.1 94604 1llmC 88 3.89e+01 g.37.1.1,g.37.1.1 91059,91060 1khoA 370 3.94e+01 a.124.1.1,b.12.1.3 72489,72490 1qh4A 380 4.09e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1fzqA 181 4.09e+01 1hurA c.37.1.8 32060 1jgsA 138 4.16e+01 a.4.5.28 66683 1m70A 190 4.19e+01 a.3.1.4,a.3.1.4 91200,91201 1y9aA 360 4.20e+01 1qh8A 478 4.20e+01 1qguA c.92.2.3 35633 1q02A 52 4.29e+01 a.5.2.1 95490 1pwgA 349 4.29e+01 e.3.1.1 104340 1yqsA 349 4.29e+01 1m4jA 142 4.37e+01 d.109.1.2 78602 1n13B 113 4.54e+01 1o0sA 605 4.62e+01 c.2.1.7,c.58.1.3 86540,86541 2fhzA 109 4.64e+01 1q2zA 120 4.65e+01 a.118.19.1 95656 3pviA 157 4.69e+01 3pviA c.52.1.6 33300 1qo3C 137 4.75e+01 1qo3C d.169.1.1 42350 1opc 110 4.80e+01 1opc a.4.6.1 16231 1lk2A 274 4.84e+01 b.1.1.2,d.19.1.1 91056,91057 1mg4A 113 4.85e+01 d.15.11.1 84953 1h5qA 265 4.87e+01 1cydA c.2.1.2 60643 1mldA 314 4.90e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1yvhA 329 4.91e+01 1wn5A 130 4.91e+01 1vquA 374 4.91e+01 1ryp2 233 4.94e+01 1ryp2 1z6oM 191 4.97e+01 2nlrA 234 5.00e+01 2nlrA b.29.1.11 24344 1oi6A 205 5.09e+01 b.82.1.1 103940 1uj2A 252 5.10e+01 c.37.1.6 99452 1qr0A 228 5.12e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1lxjA 104 5.14e+01 d.58.48.1 84736 1t0hA 132 5.14e+01 b.34.2.1 106207 1f02T 66 5.24e+01 1f02T j.67.1.1 46360 1i8aA 189 5.30e+01 1i82A b.1.9.2 61951 1y13A 181 5.33e+01 1s6bA 119 5.47e+01 a.133.1.2 98592 1ozjA 144 5.51e+01 d.164.1.1 93846 1wteA 272 5.54e+01 1l5wA 796 5.55e+01 c.87.1.4 73605 2f62A 161 5.56e+01 1pujA 282 5.56e+01 c.37.1.8 88294 1r2zA 274 5.65e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1zi8A 236 5.71e+01 1v9nA 360 5.86e+01 1p9eA 331 5.91e+01 d.157.1.5 104088 1vjeA 166 5.92e+01 d.185.1.2 100807 1h65A 270 5.96e+01 c.37.1.8 65640 1wucA 250 5.97e+01 1sjwA 144 5.99e+01 d.17.4.9 98899 1zc6A 305 6.04e+01 1zvkA 358 6.12e+01 1b5l 172 6.13e+01 1b5l a.26.1.3 16900 1mw7A 240 6.34e+01 e.39.1.1 79557 2b0cA 206 6.35e+01 1k2xA 177 6.41e+01 d.153.1.5 90929 1wtjA 343 6.45e+01 1iseA 185 6.45e+01 d.67.3.1 90691 2cvdA 198 6.67e+01 1tg0A 68 6.67e+01 256bA 106 6.70e+01 256bA a.24.3.1 16539 1avwB 171 6.78e+01 1wba b.42.4.1 25599 1xmbA 418 6.88e+01 1iv8A 720 6.90e+01 b.71.1.1,c.1.8.1 76842,76843 1usgA 346 6.97e+01 c.93.1.1 99864 1b8aA 438 7.09e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1ca1 370 7.18e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1z15A 344 7.19e+01 1bdb 277 7.20e+01 1bdb c.2.1.2 29874 1x3sA 195 7.25e+01 1iyhA 198 7.28e+01 a.45.1.1,c.47.1.5 83790,83791 1j8mF 297 7.29e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1kdoA 227 7.30e+01 c.37.1.1 68478 1vkcA 158 7.33e+01 1yarA 233 7.33e+01 1x6vA 630 7.34e+01 1ev0A 58 7.39e+01 1ev0A d.71.1.1 39594 1tzjA 338 7.46e+01 1o59A 355 7.53e+01 b.18.1.22,b.18.1.22 92495,92496 1uptA 171 7.54e+01 c.37.1.8 99767 1vp2A 208 7.61e+01 1jh6A 189 7.63e+01 d.61.1.1 66707 1ej6B 1275 7.66e+01 i.7.1.1 45968 1x47A 98 7.69e+01 1ppjJ 62 7.77e+01 f.23.14.1 104266 2btoA 473 7.81e+01 1uacH 114 7.85e+01 b.1.1.1 99132 1x4rA 99 8.00e+01 1xlyA 234 8.02e+01 1sfp 114 8.09e+01 1sfp b.23.1.1 23895 2bkrA 212 8.15e+01 1e9rA 437 8.21e+01 c.37.1.11 64827 1e4fT 419 8.27e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1k5dB 201 8.28e+01 b.55.1.3 68169 1xhcA 367 8.32e+01 2gw6A 123 8.39e+01 1xaoA 121 8.42e+01 1twfB 1224 8.45e+01 1kk1A 410 8.54e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1v54B 227 8.55e+01 b.6.1.2,f.17.2.1 100322,100323 1fh0A 221 8.63e+01 1cs8A d.3.1.1 59832 2aioA 269 8.63e+01 1w8kA 447 8.63e+01 1zsyA 357 8.66e+01 2a5jA 191 8.68e+01 1io7A 368 8.75e+01 1f4tA a.104.1.1 18971 1owfB 94 8.75e+01 a.55.1.1 87488 1cdzA 96 8.84e+01 1cdzA c.15.1.1 30925 1mslA 109 8.90e+01 1mslA f.16.1.1 43660 1p0fA 373 8.99e+01 b.35.1.2,c.2.1.1 87642,87643 2csbA 519 8.99e+01 1t3uA 104 8.99e+01 d.244.1.1 99120