# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b9mA 265 1.66e-01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1fjrA 195 8.08e-01 1fjrA b.102.1.1 59855 1rybA 212 8.29e-01 c.56.3.1 98098 1xd7A 145 2.29e+00 a.4.5.55 109566 1gw5A 621 2.56e+00 a.118.1.10 70629 1lj2A 110 2.67e+00 h.1.13.2 73926 2ae6A 166 3.04e+00 1fgyA 127 3.15e+00 1faoA b.55.1.1 26976 1zemA 262 4.02e+00 1m70A 190 4.40e+00 a.3.1.4,a.3.1.4 91200,91201 1vlpA 441 4.70e+00 d.41.2.2,d.41.2.3 108840,108841 1qbzA 123 4.77e+00 1qbzA h.3.2.1 45729 1n0uA 842 5.03e+00 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1mun 225 5.05e+00 1mun a.96.1.2 18744 1e3dB 542 5.26e+00 1h2rL e.18.1.1 59189 1ho8A 480 5.47e+00 1ho8A a.118.1.9 61107 1oktA 211 5.64e+00 a.45.1.1,c.47.1.5 93272,93273 1i1qA 520 6.47e+00 1qdlA d.161.1.1 61543 2f9lA 199 7.38e+00 1n4qB 377 7.43e+00 a.102.4.3 91636 1vyfA 135 7.78e+00 b.60.1.2 108902 1q2zA 120 7.88e+00 a.118.19.1 95656 1ee8A 266 9.00e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1u0kA 288 9.94e+00 d.21.1.2,d.21.1.2 107547,107548 1a5t 334 1.02e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1vcdA 126 1.05e+01 1nwzA 125 1.09e+01 d.110.3.1 86370 1ifc 132 1.14e+01 b.60.1.2 27173 1p9bA 442 1.14e+01 c.37.1.10 94385 1l3lA 234 1.22e+01 a.4.6.2,d.110.5.1 73541,73542 1xrkA 124 1.25e+01 1kvkA 395 1.36e+01 d.14.1.5,d.58.26.3 73060,73061 2c7pA 327 1.48e+01 1avoA 60 1.52e+01 1avoA a.24.8.1 16619 1txqA 93 1.55e+01 1bouA 139 1.59e+01 1bouA a.88.1.1 18521 2aawA 222 1.88e+01 1opc 110 1.92e+01 1opc a.4.6.1 16231 4ubpB 126 2.04e+01 1ubpB b.85.3.1 28345 1s3sG 127 2.20e+01 d.15.1.2 98457 1xi1A 575 2.28e+01 1kqwA 134 2.30e+01 b.60.1.2 72887 1on0A 158 2.36e+01 d.108.1.1 87095 1whuA 104 2.55e+01 1eemA 241 2.55e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1y74A 57 2.57e+01 1ejxB 101 2.74e+01 b.85.3.1 83183 1avqA 228 2.74e+01 1avqA c.52.1.13 33326 2b5eA 504 2.88e+01 2fbwC 141 2.88e+01 1qzzA 374 3.04e+01 a.4.5.29,c.66.1.12 96719,96720 1lshA 1056 3.06e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1l5aA 436 3.19e+01 c.43.1.2,c.43.1.2 75923,75924 1u69A 163 3.21e+01 d.32.1.7 107699 1rsy 152 3.29e+01 1rsy b.7.1.2 23192 1womA 271 3.63e+01 1wwpA 119 3.65e+01 2cz1A 206 3.93e+01 1kaeA 434 4.14e+01 c.82.1.2 72247 1wy9A 147 4.16e+01 1cdzA 96 4.27e+01 1cdzA c.15.1.1 30925 1aa7A 158 4.27e+01 1aa7A a.95.1.1 18741 1dugA 234 4.31e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1yge 839 4.36e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1yj7A 171 4.36e+01 1t9hA 307 4.63e+01 1qnxA 209 4.74e+01 1qnxA d.111.1.1 40914 1tffA 234 4.82e+01 d.3.1.11 106854 1pujA 282 4.82e+01 c.37.1.8 88294 1qazA 351 5.05e+01 1qazA a.102.3.1 18848 1yh3A 256 5.18e+01 1t56A 216 5.20e+01 a.4.1.9,a.121.1.1 106428,106429 2d1pC 95 5.21e+01 1w8kA 447 5.33e+01 1g3mA 294 5.38e+01 c.37.1.5 83268 1fgkA 310 5.44e+01 1fgkA d.144.1.7 41693 1txlA 215 5.55e+01 b.60.1.4 107429 2gaiA 633 5.67e+01 1uunA 184 5.77e+01 f.6.1.2 100012 2c4jA 218 5.86e+01 1zxtA 76 5.87e+01 1ituA 369 5.93e+01 c.1.9.7 71423 2msbA 115 5.95e+01 1rtm1 d.169.1.1 42355 2b0jA 358 5.95e+01 1fc6A 388 6.14e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1wkoA 180 6.17e+01 1unnC 115 6.25e+01 d.240.1.1 99680 1e85A 127 6.28e+01 1bbhA a.24.3.2 16549 1s28A 132 6.38e+01 d.198.1.1 105223 1wdiA 345 6.39e+01 1dqaA 467 6.46e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1xmbA 418 6.48e+01 1l3kA 196 6.52e+01 d.58.7.1,d.58.7.1 73539,73540 1fuxA 166 6.54e+01 1fjjA b.17.1.2 60034 1ubkL 534 6.55e+01 e.18.1.1 88422 1e4fT 419 6.62e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1bupA 386 6.65e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1lq7A 67 6.76e+01 k.9.1.1 74183 2fq3A 104 6.83e+01 1mg4A 113 6.84e+01 d.15.11.1 84953 1itvA 195 6.87e+01 b.66.1.1 76791 1yirA 408 6.88e+01 1rgxA 114 6.97e+01 g.77.1.1 104932 1z9lA 128 7.15e+01 1vc3B 97 7.17e+01 1mkyA 439 7.29e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1wmzA 140 7.35e+01 d.169.1.1 109422 1wuiL 534 7.36e+01 1nz0A 118 7.59e+01 d.14.1.2 86433 1y1oA 203 7.70e+01 1pjcA 361 7.78e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1no7A 604 7.81e+01 e.48.1.1 92016 1n1tA 641 8.02e+01 b.29.1.15,b.68.1.1 79821,79822 1ng6A 148 8.03e+01 a.182.1.1 85670 1x4rA 99 8.10e+01 1t15A 214 8.23e+01 c.15.1.3,c.15.1.3 99067,99068 1ep3B 262 8.40e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1voqa 90 8.47e+01 2b2aA 199 8.57e+01 2blkA 122 8.75e+01 1ze3H 122 8.81e+01 2cybA 323 8.87e+01