# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1womA 271 1.94e+00 1v7cA 351 4.92e+00 c.79.1.1 100446 1yuwA 554 7.55e+00 2gaiA 633 7.92e+00 1vhmA 195 8.65e+00 d.110.2.1 100691 1kay 381 8.83e+00 1ba1 c.55.1.1,c.55.1.1 33385,33386 1bupA 386 8.84e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1qxrA 189 8.95e+00 b.82.1.7 96552 1vcdA 126 9.32e+00 1u20A 212 9.34e+00 1x82A 190 9.40e+00 1wyuB 474 1.07e+01 1zemA 262 1.09e+01 1f5qB 252 1.10e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1sdoA 203 1.12e+01 c.52.1.21 98809 2c0cA 362 1.18e+01 2b33A 140 1.23e+01 1st9A 143 1.25e+01 c.47.1.10 98987 1rybA 212 1.26e+01 c.56.3.1 98098 2f9sA 151 1.28e+01 1k4nA 192 1.42e+01 d.32.1.5 72059 1avoA 60 1.49e+01 1avoA a.24.8.1 16619 1vpkA 378 1.54e+01 1y74A 57 1.66e+01 1i1qA 520 1.68e+01 1qdlA d.161.1.1 61543 1sesA 421 1.77e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 1t9mA 214 1.78e+01 1lj2A 110 2.33e+01 h.1.13.2 73926 1e1hA 287 2.39e+01 d.92.1.7 83167 1phk 298 2.62e+01 1cdkA d.144.1.7 41635 1k3yA 221 2.66e+01 a.45.1.1,c.47.1.5 77245,77246 1e3dB 542 2.70e+01 1h2rL e.18.1.1 59189 1t35A 191 2.84e+01 c.129.1.1 99108 2aorA 223 2.89e+01 2f9lA 199 2.99e+01 1rw2A 152 3.08e+01 a.118.19.1 97961 1fvrA 327 3.27e+01 d.144.1.7 60047 1yqbA 100 3.28e+01 1hnjA 317 3.29e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1ox6A 555 3.34e+01 c.1.2.1,c.23.16.1 87505,87506 1ee8A 266 3.43e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1smlA 269 3.57e+01 1smlA d.157.1.1 42053 2aioA 269 3.57e+01 1xmbA 418 3.73e+01 1yyaA 250 3.73e+01 1pb1A 416 3.74e+01 c.77.1.1 88014 1ca1 370 3.76e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1khoA 370 3.77e+01 a.124.1.1,b.12.1.3 72489,72490 1v9yA 167 3.82e+01 d.110.3.2 108454 1xd7A 145 3.84e+01 a.4.5.55 109566 1on0A 158 3.87e+01 d.108.1.1 87095 1hhsA 664 3.94e+01 1hi0P e.8.1.6 61045 1iv8A 720 3.95e+01 b.71.1.1,c.1.8.1 76842,76843 2bkrA 212 3.99e+01 1df7A 159 4.09e+01 3dfr c.71.1.1 34885 1zwxA 301 4.15e+01 1k3bA 119 4.22e+01 b.61.5.1 72016 1vpjA 192 4.31e+01 1q2zA 120 4.36e+01 a.118.19.1 95656 1go3E 187 4.38e+01 b.40.4.5,d.230.1.1 83054,83055 1bbzA 58 4.44e+01 1bbzA b.34.2.1 24477 1gkzA 388 4.49e+01 a.29.5.1,d.122.1.4 65268,65269 1z9lA 128 4.50e+01 1uvjA 664 4.66e+01 e.8.1.6 100045 1jvnA 555 4.68e+01 c.1.2.1,c.23.16.1 67355,67356 2msbA 115 4.75e+01 1rtm1 d.169.1.1 42355 1o3yA 166 4.85e+01 c.37.1.8 86618 1wwpA 119 4.85e+01 1cojA 212 4.90e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1aboA 62 4.91e+01 1bbzA b.34.2.1 24474 1f3aA 222 4.94e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1ryp2 233 5.04e+01 1ryp2 2aw5A 541 5.07e+01 1f97A 212 5.08e+01 1f97A b.1.1.1,b.1.1.4 19763,21764 1r4aA 165 5.12e+01 c.37.1.8 96986 1z6oM 191 5.16e+01 1kaeA 434 5.24e+01 c.82.1.2 72247 1xt9A 212 5.29e+01 1zowA 313 5.30e+01 1bu6O 501 5.32e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1atzA 189 5.46e+01 1atzA c.62.1.1 34132 2bkqA 212 5.81e+01 1ppjJ 62 5.91e+01 f.23.14.1 104266 1ptvA 321 6.11e+01 1pty c.45.1.2 32665 1u69A 163 6.12e+01 d.32.1.7 107699 1lwjA 441 6.22e+01 b.71.1.1,c.1.8.1 74303,74304 2bolA 314 6.32e+01 1y75A 118 6.35e+01 1cf4B 44 6.49e+01 1cf4B 1ox0A 430 6.57e+01 c.95.1.1,c.95.1.1 87495,87496 1zc6A 305 6.68e+01 1r77A 103 6.69e+01 1zccA 248 6.69e+01 2etjA 250 6.70e+01 2bmeA 186 6.75e+01 1k1xA 659 6.86e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1y8oA 419 6.89e+01 1mg4A 113 7.03e+01 d.15.11.1 84953 1wucA 250 7.33e+01 1v2xA 194 7.35e+01 c.116.1.1 100274 1xrjA 261 7.38e+01 1r8sA 164 7.50e+01 c.37.1.8 97247 1k2fA 190 7.58e+01 b.8.1.2 68054 2cblA 305 7.66e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1od5A 492 7.74e+01 b.82.1.2,b.82.1.2 86832,86833 1itxA 419 7.75e+01 c.1.8.5,d.26.3.1 71425,71426 1w0hA 204 7.78e+01 1g7fA 298 7.82e+01 1pty c.45.1.2 60330 1w8kA 447 7.83e+01 1c6vX 81 7.92e+01 1ihvA b.34.7.1 24641 1xeeA 91 7.97e+01 1mw7A 240 8.13e+01 e.39.1.1 79557 1gg4A 452 8.40e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1hoe 74 8.45e+01 1hoe b.5.1.1 22833 1ok0A 74 8.45e+01 b.5.1.1 93191 1y3nA 490 8.54e+01 1rypC 244 8.57e+01 1rypC d.153.1.4 41934 1ysjA 404 8.72e+01 1uunA 184 8.79e+01 f.6.1.2 100012 1wqgA 185 8.84e+01 1o0sA 605 8.87e+01 c.2.1.7,c.58.1.3 86540,86541 1m70A 190 8.90e+01 a.3.1.4,a.3.1.4 91200,91201 1ymmB 198 8.96e+01 1opc 110 8.99e+01 1opc a.4.6.1 16231