# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vhmA 195 6.77e-01 d.110.2.1 100691 1rybA 212 9.15e-01 c.56.3.1 98098 1womA 271 1.12e+00 1lj2A 110 2.64e+00 h.1.13.2 73926 2ae6A 166 2.81e+00 1h9sA 140 3.47e+00 1b9mA b.40.6.2,b.40.6.2 60843,60844 1zemA 262 5.38e+00 1i1qA 520 7.95e+00 1qdlA d.161.1.1 61543 1rw2A 152 8.14e+00 a.118.19.1 97961 1ituA 369 8.36e+00 c.1.9.7 71423 1b9mA 265 9.01e+00 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1u69A 163 1.01e+01 d.32.1.7 107699 1l3lA 234 1.19e+01 a.4.6.2,d.110.5.1 73541,73542 2f9lA 199 1.26e+01 1wwpA 119 1.30e+01 1m70A 190 1.36e+01 a.3.1.4,a.3.1.4 91200,91201 1plq 258 1.50e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1vlpA 441 1.56e+01 d.41.2.2,d.41.2.3 108840,108841 2gaiA 633 1.58e+01 1tag 324 1.63e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1gw0A 559 1.64e+01 b.6.1.3,b.6.1.3,b.6.1.3 70623,70624,70625 1ho8A 480 1.69e+01 1ho8A a.118.1.9 61107 2fuqA 747 1.71e+01 1y9lA 115 1.78e+01 2ashA 381 1.80e+01 2bmeA 186 2.07e+01 1p9bA 442 2.12e+01 c.37.1.10 94385 1oejA 193 2.15e+01 b.60.1.4 92798 1df7A 159 2.26e+01 3dfr c.71.1.1 34885 1avqA 228 2.29e+01 1avqA c.52.1.13 33326 1txlA 215 2.38e+01 b.60.1.4 107429 1wvfA 520 2.40e+01 1otjA 283 2.46e+01 b.82.2.5 93517 1mun 225 2.46e+01 1mun a.96.1.2 18744 1j8yF 297 2.47e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2f02A 323 2.52e+01 1mjhA 162 2.56e+01 1mjhA c.26.2.4 31639 1xrkA 124 2.64e+01 2aioA 269 2.79e+01 1smlA 269 2.83e+01 1smlA d.157.1.1 42053 1t56A 216 2.84e+01 a.4.1.9,a.121.1.1 106428,106429 1ep3B 262 2.92e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1fmjA 351 2.93e+01 c.37.1.5 59879 2bcgY 206 2.94e+01 1j8mF 297 2.98e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1eijA 80 2.99e+01 1eijA a.5.6.1 16298 1ukvY 206 3.00e+01 c.37.1.8 107918 1fjrA 195 3.05e+01 1fjrA b.102.1.1 59855 1t3lA 337 3.09e+01 b.34.2.1,c.37.1.1 106358,106359 1mf7A 194 3.12e+01 c.62.1.1 84937 1tadA 324 3.15e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1lba 146 3.16e+01 1lba d.118.1.1 41062 1y74A 57 3.22e+01 1uouA 474 3.32e+01 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1ps9A 671 3.34e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2awdA 323 3.37e+01 1q2zA 120 3.45e+01 a.118.19.1 95656 1hg4A 279 3.48e+01 1lbd a.123.1.1 19333 1r9dA 787 3.54e+01 c.7.1.1 104865 1knvA 293 3.60e+01 c.52.1.7 68707 1wyuB 474 3.84e+01 1uunA 184 3.85e+01 f.6.1.2 100012 1souA 194 3.94e+01 c.124.1.6 105858 1n3gA 113 3.97e+01 d.204.1.1 79962 1w0hA 204 4.16e+01 1vpkA 378 4.19e+01 3pyp 125 4.26e+01 3pyp d.110.3.1 40897 1z84A 351 4.34e+01 1iv8A 720 4.36e+01 b.71.1.1,c.1.8.1 76842,76843 1jogA 146 4.38e+01 a.24.16.2 77142 1n4kA 381 4.40e+01 a.118.22.1,b.42.6.1 79992,79993 1bylA 125 4.45e+01 1bylA d.32.1.2 38495 2f8mA 244 4.52e+01 1voqa 90 4.59e+01 1nwzA 125 4.65e+01 d.110.3.1 86370 1ug8A 87 4.81e+01 d.68.7.1 107825 2b33A 140 4.91e+01 1lvaA 258 5.02e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1v7cA 351 5.08e+01 c.79.1.1 100446 1mkp 144 5.13e+01 1vhrA c.45.1.1 32654 1xd7A 145 5.20e+01 a.4.5.55 109566 2fuvA 549 5.21e+01 1ido 192 5.28e+01 1ido c.62.1.1 34139 1e3dB 542 5.37e+01 1h2rL e.18.1.1 59189 1vf1A 229 5.42e+01 1qqeA 292 5.46e+01 1qqeA a.118.8.1 19210 1e85A 127 5.48e+01 1bbhA a.24.3.2 16549 1b7yB 785 5.56e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2gmyA 153 5.62e+01 256bA 106 5.67e+01 256bA a.24.3.1 16539 2blkA 122 5.69e+01 1onqA 283 5.93e+01 b.1.1.2,d.19.1.1 93365,93366 1gsa 316 6.07e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1rktA 205 6.26e+01 a.4.1.9,a.121.1.1 97623,97624 1e4fT 419 6.32e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1wkqA 164 6.41e+01 c.97.1.2 109393 1cf4B 44 6.51e+01 1cf4B 1sesA 421 6.67e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 2bi7A 384 6.76e+01 1dugA 234 6.81e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1uh4A 637 6.83e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1nuyA 337 6.84e+01 e.7.1.1 86213 1xiuA 230 7.07e+01 1whuA 104 7.29e+01 1wucA 250 7.42e+01 1a5t 334 7.50e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1tu7A 208 7.65e+01 1a44 185 7.67e+01 1a44 b.17.1.1 23704 1nowA 507 7.74e+01 c.1.8.6,d.92.2.1 85936,85937 1qnxA 209 7.75e+01 1qnxA d.111.1.1 40914 2fd5A 180 7.75e+01 1jpaA 312 7.86e+01 d.144.1.7 67011 2c4jA 218 7.87e+01 1ksqA 75 7.95e+01 g.23.1.1 91026 1phk 298 8.12e+01 1cdkA d.144.1.7 41635 2c0cA 362 8.28e+01 2glzA 153 8.40e+01 1cdzA 96 8.43e+01 1cdzA c.15.1.1 30925 1qqcA 773 8.45e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1oktA 211 8.46e+01 a.45.1.1,c.47.1.5 93272,93273 1n4qB 377 8.54e+01 a.102.4.3 91636 1lk5A 229 8.57e+01 c.124.1.4,d.58.40.1 73960,73961 2gfoA 396 8.65e+01 1td6A 306 8.85e+01 1wxxA 382 8.90e+01 1x4rA 99 8.92e+01