# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1womA 271 1.44e-01 1vhmA 195 8.77e-01 d.110.2.1 100691 1wyuB 474 1.32e+00 2b33A 140 1.45e+00 1cojA 212 1.59e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 1sdoA 203 2.09e+00 c.52.1.21 98809 2gaiA 633 2.43e+00 1zowA 313 3.08e+00 1rybA 212 3.91e+00 c.56.3.1 98098 1zemA 262 4.33e+00 1hnjA 317 4.63e+00 1hn9A c.95.1.2,c.95.1.2 35969,35970 2f9lA 199 4.91e+00 1u20A 212 5.15e+00 1qxrA 189 5.39e+00 b.82.1.7 96552 1x82A 190 6.80e+00 2c0cA 362 7.62e+00 1kl7A 514 7.70e+00 c.79.1.1 72678 1vpkA 378 8.51e+00 2fd5A 180 8.55e+00 2aorA 223 8.58e+00 1v7cA 351 8.71e+00 c.79.1.1 100446 1t9mA 214 9.63e+00 1r77A 103 9.66e+00 1df7A 159 1.02e+01 3dfr c.71.1.1 34885 1hzpA 335 1.03e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 2g3aA 152 1.08e+01 1bbzA 58 1.12e+01 1bbzA b.34.2.1 24477 1kaeA 434 1.17e+01 c.82.1.2 72247 1otgA 125 1.19e+01 1otgA d.80.1.2 39831 1v5dA 386 1.19e+01 1e1hA 287 1.22e+01 d.92.1.7 83167 1fvrA 327 1.23e+01 d.144.1.7 60047 1i1qA 520 1.25e+01 1qdlA d.161.1.1 61543 1y8oA 419 1.32e+01 1aboA 62 1.33e+01 1bbzA b.34.2.1 24474 1kay 381 1.40e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1ysjA 404 1.43e+01 1rypC 244 1.46e+01 1rypC d.153.1.4 41934 1u6eA 335 1.53e+01 1vcdA 126 1.55e+01 1wk2A 121 1.64e+01 1avoA 60 1.68e+01 1avoA a.24.8.1 16619 1go4E 100 1.71e+01 h.1.22.1 70296 1f5qB 252 1.73e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1y3nA 490 1.74e+01 1trb 320 1.78e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1go3E 187 1.81e+01 b.40.4.5,d.230.1.1 83054,83055 1gpmA 525 1.81e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1yiyA 429 1.82e+01 2bmeA 186 1.84e+01 1lj2A 110 1.87e+01 h.1.13.2 73926 2msbA 115 1.89e+01 1rtm1 d.169.1.1 42355 1z9lA 128 1.93e+01 1xd7A 145 1.96e+01 a.4.5.55 109566 1yizA 429 1.98e+01 1b8oA 284 2.00e+01 1b8oA c.56.2.1 33762 1wqgA 185 2.01e+01 1on0A 158 2.05e+01 d.108.1.1 87095 1xeeA 91 2.12e+01 1od5A 492 2.12e+01 b.82.1.2,b.82.1.2 86832,86833 1bupA 386 2.16e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1k4nA 192 2.20e+01 d.32.1.5 72059 2aw5A 541 2.27e+01 1y74A 57 2.28e+01 1ee8A 266 2.37e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1st9A 143 2.38e+01 c.47.1.10 98987 1atzA 189 2.39e+01 1atzA c.62.1.1 34132 2bw8A 227 2.44e+01 1rw2A 152 2.45e+01 a.118.19.1 97961 1yr2A 741 2.49e+01 1lba 146 2.52e+01 1lba d.118.1.1 41062 1v9yA 167 2.61e+01 d.110.3.2 108454 1q52A 314 2.73e+01 c.14.1.3 95846 2f9sA 151 2.75e+01 2f71A 298 2.94e+01 1ptvA 321 2.95e+01 1pty c.45.1.2 32665 1y75A 118 3.03e+01 2ar9A 278 3.09e+01 2cs7A 55 3.11e+01 1yyaA 250 3.22e+01 1ujrA 110 3.29e+01 1bed 181 3.29e+01 1fvkA c.47.1.13 90330 1dl5A 317 3.30e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1vbiA 344 3.39e+01 1u69A 163 3.43e+01 d.32.1.7 107699 1ho8A 480 3.50e+01 1ho8A a.118.1.9 61107 1wvfA 520 3.54e+01 1acf 125 3.57e+01 3nul d.110.1.1 40882 1k3bA 119 3.58e+01 b.61.5.1 72016 1cf4B 44 3.59e+01 1cf4B 1sluA 142 3.64e+01 1sluA b.16.1.1 23685 1qorA 327 3.69e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1e3dB 542 3.76e+01 1h2rL e.18.1.1 59189 1yw5A 177 3.76e+01 1i50B 1224 3.78e+01 e.29.1.1 61755 1ox6A 555 3.78e+01 c.1.2.1,c.23.16.1 87505,87506 1y9lA 115 3.78e+01 1i19A 561 3.81e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1c6vX 81 3.91e+01 1ihvA b.34.7.1 24641 1mkp 144 4.03e+01 1vhrA c.45.1.1 32654 1jvnA 555 4.05e+01 c.1.2.1,c.23.16.1 67355,67356 1avqA 228 4.09e+01 1avqA c.52.1.13 33326 1h0bA 256 4.24e+01 b.29.1.11 83422 3pte 349 4.25e+01 3pte e.3.1.1 42687 1ctqA 166 4.34e+01 1ctqA c.37.1.8 31965 1sesA 421 4.34e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 2azwA 148 4.42e+01 1lqtA 456 4.42e+01 c.3.1.1,c.4.1.1 74198,74199 1t3lA 337 4.51e+01 b.34.2.1,c.37.1.1 106358,106359 1gkzA 388 4.51e+01 a.29.5.1,d.122.1.4 65268,65269 1td6A 306 4.52e+01 1r4aA 165 4.56e+01 c.37.1.8 96986 2fbyA 205 4.58e+01 1pa1A 310 4.62e+01 c.45.1.2 94404 2bolA 314 4.69e+01 1mzjA 339 4.77e+01 c.95.1.2,c.95.1.2 79700,79701 1uteA 313 4.80e+01 1uteA d.159.1.1 42078 1fiwA 290 4.86e+01 5ptp 1pd21 199 4.86e+01 1pd21 1g3mA 294 4.93e+01 c.37.1.5 83268 1qwtA 255 4.98e+01 b.26.1.3 96501 1rktA 205 5.01e+01 a.4.1.9,a.121.1.1 97623,97624 1xygD 359 5.05e+01 1wwpA 119 5.11e+01 1zd9A 188 5.12e+01 1xrjA 261 5.12e+01 1g5aA 628 5.14e+01 b.71.1.1,c.1.8.1 65152,65153 1ifqA 138 5.14e+01 1ifqA d.110.4.1 62350 1y4oA 104 5.20e+01 1txoA 237 5.30e+01 1w0hA 204 5.38e+01 1pf5A 131 5.47e+01 d.79.1.1 94604 1llmC 88 5.61e+01 g.37.1.1,g.37.1.1 91059,91060 1khoA 370 5.68e+01 a.124.1.1,b.12.1.3 72489,72490 2pviA 157 5.75e+01 3pviA c.52.1.6 33302 1qh4A 380 5.89e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1fzqA 181 5.89e+01 1hurA c.37.1.8 32060 1jgsA 138 5.99e+01 a.4.5.28 66683 1phk 298 6.00e+01 1cdkA d.144.1.7 41635 1m70A 190 6.04e+01 a.3.1.4,a.3.1.4 91200,91201 1y9aA 360 6.05e+01 1qh8A 478 6.05e+01 1qguA c.92.2.3 35633 1q02A 52 6.17e+01 a.5.2.1 95490 1pwgA 349 6.18e+01 e.3.1.1 104340 1yqsA 349 6.18e+01 1mplA 349 6.21e+01 e.3.1.1 79387 1k1xA 659 6.25e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1m4jA 142 6.29e+01 d.109.1.2 78602 1g7fA 298 6.36e+01 1pty c.45.1.2 60330 1ek8A 185 6.51e+01 1ek8A d.67.3.1 59444 1n13B 113 6.53e+01 1eijA 80 6.55e+01 1eijA a.5.6.1 16298 1o0sA 605 6.64e+01 c.2.1.7,c.58.1.3 86540,86541 1sdeA 347 6.66e+01 2fhzA 109 6.67e+01 1q2zA 120 6.68e+01 a.118.19.1 95656 3pviA 157 6.74e+01 3pviA c.52.1.6 33300 1qo3C 137 6.83e+01 1qo3C d.169.1.1 42350 1ofnA 205 6.87e+01 b.82.1.1 92830 1opc 110 6.89e+01 1opc a.4.6.1 16231 1hvbA 349 6.91e+01 3pte e.3.1.1 42686 1lk2A 274 6.95e+01 b.1.1.2,d.19.1.1 91056,91057 1mg4A 113 6.96e+01 d.15.11.1 84953 1h5qA 265 6.99e+01 1cydA c.2.1.2 60643 1onqA 283 6.99e+01 b.1.1.2,d.19.1.1 93365,93366 1mldA 314 7.03e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1yvhA 329 7.05e+01 1wn5A 130 7.05e+01 1vquA 374 7.05e+01 1ryp2 233 7.09e+01 1ryp2 2cblA 305 7.09e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1z6oM 191 7.13e+01 2nlrA 234 7.17e+01 2nlrA b.29.1.11 24344 1oi6A 205 7.30e+01 b.82.1.1 103940 1uj2A 252 7.32e+01 c.37.1.6 99452 1qr0A 228 7.34e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1lxjA 104 7.37e+01 d.58.48.1 84736 1t0hA 132 7.38e+01 b.34.2.1 106207 1f02T 66 7.52e+01 1f02T j.67.1.1 46360 1i8aA 189 7.59e+01 1i82A b.1.9.2 61951 1y13A 181 7.63e+01 1vrpA 381 7.81e+01 1s6bA 119 7.84e+01 a.133.1.2 98592 1ozjA 144 7.89e+01 d.164.1.1 93846 1wteA 272 7.93e+01 1l5wA 796 7.95e+01 c.87.1.4 73605 2f62A 161 7.96e+01 1pujA 282 7.96e+01 c.37.1.8 88294 1smlA 269 8.07e+01 1smlA d.157.1.1 42053 1r2zA 274 8.09e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1uptC 170 8.10e+01 c.37.1.8 99769 1zi8A 236 8.17e+01 1v9nA 360 8.38e+01 1p9eA 331 8.44e+01 d.157.1.5 104088 1vjeA 166 8.47e+01 d.185.1.2 100807 1h65A 270 8.52e+01 c.37.1.8 65640 1wucA 250 8.53e+01 1sjwA 144 8.57e+01 d.17.4.9 98899 1rtm1 149 8.61e+01 1rtm1 1zc6A 305 8.64e+01 1zvkA 358 8.75e+01 1b5l 172 8.76e+01 1b5l a.26.1.3 16900 2a0kA 161 8.95e+01 2f2tA 161 8.95e+01 1rypE 242 8.95e+01 1rypE d.153.1.4 41936