# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h9sA 140 1.45e-01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1b9mA 265 2.47e-01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1vhmA 195 1.04e+00 d.110.2.1 100691 1fjrA 195 1.19e+00 1fjrA b.102.1.1 59855 1rybA 212 1.22e+00 c.56.3.1 98098 1xd7A 145 3.33e+00 a.4.5.55 109566 1gw5A 621 3.72e+00 a.118.1.10 70629 1lj2A 110 3.88e+00 h.1.13.2 73926 2ae6A 166 4.41e+00 1fgyA 127 4.57e+00 1faoA b.55.1.1 26976 1zemA 262 5.82e+00 1m70A 190 6.36e+00 a.3.1.4,a.3.1.4 91200,91201 1vlpA 441 6.80e+00 d.41.2.2,d.41.2.3 108840,108841 1rw2A 152 6.84e+00 a.118.19.1 97961 1qbzA 123 6.89e+00 1qbzA h.3.2.1 45729 1n0uA 842 7.27e+00 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1mun 225 7.30e+00 1mun a.96.1.2 18744 1e3dB 542 7.59e+00 1h2rL e.18.1.1 59189 1t3lA 337 7.60e+00 b.34.2.1,c.37.1.1 106358,106359 1ho8A 480 7.90e+00 1ho8A a.118.1.9 61107 1oktA 211 8.14e+00 a.45.1.1,c.47.1.5 93272,93273 1i1qA 520 9.32e+00 1qdlA d.161.1.1 61543 3pyp 125 1.02e+01 3pyp d.110.3.1 40897 2f9lA 199 1.06e+01 1n4qB 377 1.07e+01 a.102.4.3 91636 1vyfA 135 1.12e+01 b.60.1.2 108902 1q2zA 120 1.13e+01 a.118.19.1 95656 1ee8A 266 1.29e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1u0kA 288 1.43e+01 d.21.1.2,d.21.1.2 107547,107548 1a5t 334 1.46e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1vcdA 126 1.50e+01 1nwzA 125 1.56e+01 d.110.3.1 86370 1ifc 132 1.63e+01 b.60.1.2 27173 1p9bA 442 1.64e+01 c.37.1.10 94385 1l3lA 234 1.74e+01 a.4.6.2,d.110.5.1 73541,73542 1xrkA 124 1.79e+01 1ax4A 467 1.84e+01 1ax4A c.67.1.2 34391 1kvkA 395 1.95e+01 d.14.1.5,d.58.26.3 73060,73061 2c7pA 327 2.12e+01 1avoA 60 2.17e+01 1avoA a.24.8.1 16619 1txqA 93 2.22e+01 1bouA 139 2.27e+01 1bouA a.88.1.1 18521 2aawA 222 2.68e+01 1opc 110 2.74e+01 1opc a.4.6.1 16231 4ubpB 126 2.91e+01 1ubpB b.85.3.1 28345 1f3aA 222 2.98e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1s3sG 127 3.14e+01 d.15.1.2 98457 1xi1A 575 3.25e+01 1kqwA 134 3.28e+01 b.60.1.2 72887 1on0A 158 3.37e+01 d.108.1.1 87095 1ny9A 143 3.55e+01 a.181.1.1 86401 1whuA 104 3.63e+01 1eemA 241 3.63e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1y74A 57 3.66e+01 1vorW 173 3.83e+01 1ejxB 101 3.89e+01 b.85.3.1 83183 1avqA 228 3.89e+01 1avqA c.52.1.13 33326 1dat 174 4.02e+01 2fha a.25.1.1 16677 2b5eA 504 4.09e+01 2fbwC 141 4.10e+01 1qzzA 374 4.32e+01 a.4.5.29,c.66.1.12 96719,96720 1lshA 1056 4.35e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1l5aA 436 4.53e+01 c.43.1.2,c.43.1.2 75923,75924 1u69A 163 4.56e+01 d.32.1.7 107699 1rsy 152 4.68e+01 1rsy b.7.1.2 23192 1ejrB 101 5.01e+01 1ubpB b.85.3.1 28320 1womA 271 5.16e+01 1wwpA 119 5.18e+01 6mhtA 327 5.22e+01 6mhtA c.66.1.26 34226 2b33A 140 5.25e+01 2cz1A 206 5.57e+01 1b74A 254 5.75e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1kaeA 434 5.86e+01 c.82.1.2 72247 2ahjA 206 5.87e+01 2ahjA d.149.1.1 41772 1wy9A 147 5.90e+01 1cdzA 96 6.06e+01 1cdzA c.15.1.1 30925 1aa7A 158 6.06e+01 1aa7A a.95.1.1 18741 1dugA 234 6.11e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1yge 839 6.18e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1yj7A 171 6.19e+01 1bylA 125 6.36e+01 1bylA d.32.1.2 38495 1qqeA 292 6.39e+01 1qqeA a.118.8.1 19210 1iz0A 302 6.47e+01 b.35.1.2,c.2.1.1 83821,83822 1t9hA 307 6.56e+01 1eijA 80 6.58e+01 1eijA a.5.6.1 16298 1y9kA 157 6.62e+01 1oejA 193 6.68e+01 b.60.1.4 92798 1qnxA 209 6.72e+01 1qnxA d.111.1.1 40914 1tffA 234 6.82e+01 d.3.1.11 106854 1pujA 282 6.82e+01 c.37.1.8 88294 1qazA 351 7.14e+01 1qazA a.102.3.1 18848 2sas 185 7.28e+01 2sas a.39.1.5 17258 1yh3A 256 7.33e+01 1a44 185 7.34e+01 1a44 b.17.1.1 23704 1t56A 216 7.36e+01 a.4.1.9,a.121.1.1 106428,106429 2d1pC 95 7.37e+01 1mkp 144 7.49e+01 1vhrA c.45.1.1 32654 1w8kA 447 7.54e+01 1g3mA 294 7.61e+01 c.37.1.5 83268 1fgkA 310 7.70e+01 1fgkA d.144.1.7 41693 1txlA 215 7.85e+01 b.60.1.4 107429 1e94F 449 7.87e+01 1do0A c.37.1.20 32443 2gaiA 633 8.02e+01 1jr5A 90 8.14e+01 a.150.1.1 67113 1uunA 184 8.16e+01 f.6.1.2 100012 2c4jA 218 8.29e+01 1zxtA 76 8.30e+01 1ituA 369 8.39e+01 c.1.9.7 71423 2msbA 115 8.41e+01 1rtm1 d.169.1.1 42355 2b0jA 358 8.41e+01 1zwxA 301 8.45e+01 1fc6A 388 8.68e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1wkoA 180 8.72e+01 1g13A 162 8.79e+01 1g13A b.95.1.1 60194 1unnC 115 8.84e+01 d.240.1.1 99680 1e85A 127 8.87e+01 1bbhA a.24.3.2 16549