# TARGET T0303 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0303.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 115 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 N 0.001 0.016 0.377 0.001 0.101 0.070 0.001 0.001 0.003 0.221 0.200 0.004 0.007 2 S 0.001 0.031 0.434 0.001 0.064 0.096 0.001 0.001 0.004 0.233 0.120 0.002 0.014 3 L 0.001 0.015 0.311 0.001 0.080 0.305 0.001 0.001 0.003 0.198 0.077 0.004 0.005 4 P 0.001 0.017 0.281 0.001 0.037 0.439 0.001 0.001 0.002 0.154 0.064 0.002 0.003 5 D 0.001 0.014 0.190 0.001 0.016 0.687 0.001 0.001 0.002 0.054 0.033 0.001 0.004 6 L 0.001 0.001 0.002 0.001 0.003 0.988 0.001 0.001 0.001 0.002 0.005 0.001 0.001 7 A 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 8 L 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 9 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 I 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 N 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 S 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 13 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 15 K 0.001 0.001 0.001 0.001 0.004 0.968 0.001 0.001 0.001 0.001 0.026 0.001 0.001 16 D 0.001 0.001 0.003 0.001 0.007 0.857 0.001 0.001 0.001 0.007 0.125 0.001 0.001 17 V 0.001 0.001 0.013 0.001 0.008 0.311 0.001 0.001 0.001 0.024 0.644 0.001 0.001 18 N 0.001 0.001 0.123 0.001 0.010 0.033 0.001 0.001 0.001 0.063 0.768 0.001 0.001 19 L 0.001 0.011 0.803 0.001 0.008 0.007 0.001 0.001 0.003 0.149 0.014 0.001 0.003 20 P 0.001 0.013 0.778 0.001 0.011 0.006 0.001 0.001 0.013 0.146 0.019 0.005 0.007 21 Q 0.001 0.029 0.758 0.004 0.023 0.010 0.001 0.001 0.022 0.102 0.034 0.002 0.017 22 A 0.001 0.068 0.647 0.001 0.006 0.010 0.001 0.001 0.034 0.197 0.009 0.021 0.008 23 S 0.001 0.025 0.823 0.001 0.003 0.018 0.001 0.001 0.022 0.072 0.004 0.001 0.032 24 E 0.001 0.001 0.009 0.001 0.055 0.889 0.001 0.001 0.001 0.008 0.037 0.001 0.001 25 N 0.001 0.001 0.003 0.001 0.069 0.889 0.001 0.001 0.001 0.004 0.034 0.001 0.001 26 L 0.001 0.001 0.005 0.001 0.050 0.926 0.001 0.001 0.001 0.004 0.012 0.001 0.001 27 V 0.001 0.003 0.007 0.001 0.007 0.968 0.001 0.001 0.001 0.003 0.007 0.001 0.003 28 M 0.001 0.003 0.007 0.001 0.007 0.954 0.001 0.001 0.001 0.007 0.014 0.003 0.001 29 T 0.001 0.001 0.008 0.001 0.009 0.933 0.001 0.001 0.001 0.007 0.039 0.001 0.001 30 W 0.001 0.002 0.018 0.001 0.014 0.886 0.001 0.001 0.001 0.016 0.059 0.001 0.003 31 I 0.001 0.011 0.049 0.001 0.017 0.756 0.001 0.001 0.002 0.043 0.115 0.002 0.004 32 G 0.001 0.002 0.095 0.001 0.015 0.665 0.001 0.001 0.001 0.060 0.157 0.002 0.002 33 N 0.001 0.001 0.057 0.001 0.011 0.578 0.001 0.001 0.001 0.142 0.209 0.001 0.001 34 G 0.001 0.003 0.062 0.001 0.006 0.723 0.001 0.001 0.001 0.084 0.119 0.001 0.001 35 A 0.001 0.001 0.014 0.001 0.004 0.965 0.001 0.001 0.001 0.008 0.008 0.001 0.001 36 D 0.001 0.001 0.007 0.001 0.002 0.987 0.001 0.001 0.001 0.002 0.002 0.001 0.001 37 V 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 38 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 41 R 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.009 0.001 0.001 42 A 0.001 0.001 0.003 0.001 0.001 0.971 0.001 0.001 0.001 0.003 0.022 0.001 0.001 43 V 0.001 0.001 0.016 0.001 0.006 0.918 0.001 0.001 0.001 0.009 0.049 0.001 0.001 44 D 0.001 0.001 0.040 0.001 0.035 0.762 0.001 0.001 0.001 0.022 0.137 0.001 0.001 45 W 0.001 0.001 0.052 0.001 0.076 0.547 0.001 0.001 0.001 0.063 0.260 0.001 0.001 46 A 0.001 0.005 0.122 0.001 0.103 0.320 0.001 0.001 0.002 0.090 0.356 0.001 0.001 47 C 0.001 0.008 0.269 0.001 0.072 0.182 0.001 0.001 0.004 0.186 0.272 0.002 0.004 48 T 0.001 0.010 0.477 0.001 0.041 0.108 0.001 0.001 0.008 0.197 0.150 0.003 0.005 49 Q 0.001 0.014 0.444 0.001 0.043 0.124 0.001 0.001 0.007 0.264 0.095 0.003 0.006 50 A 0.001 0.005 0.580 0.001 0.034 0.172 0.001 0.001 0.004 0.132 0.069 0.002 0.002 51 E 0.001 0.004 0.304 0.001 0.059 0.414 0.001 0.001 0.002 0.090 0.124 0.001 0.001 52 K 0.001 0.001 0.139 0.001 0.047 0.664 0.001 0.001 0.001 0.058 0.089 0.001 0.001 53 E 0.001 0.001 0.089 0.001 0.037 0.785 0.001 0.001 0.001 0.037 0.051 0.001 0.001 54 L 0.001 0.002 0.068 0.001 0.026 0.852 0.001 0.001 0.001 0.020 0.031 0.001 0.001 55 T 0.001 0.001 0.043 0.001 0.022 0.897 0.001 0.001 0.001 0.010 0.025 0.001 0.001 56 E 0.001 0.001 0.021 0.001 0.013 0.937 0.001 0.001 0.001 0.007 0.020 0.001 0.001 57 D 0.001 0.001 0.012 0.001 0.010 0.949 0.001 0.001 0.001 0.007 0.021 0.001 0.001 58 E 0.001 0.001 0.009 0.001 0.004 0.958 0.001 0.001 0.001 0.005 0.023 0.001 0.001 59 F 0.001 0.001 0.009 0.001 0.002 0.966 0.001 0.001 0.001 0.004 0.018 0.001 0.001 60 K 0.001 0.001 0.008 0.001 0.002 0.976 0.001 0.001 0.001 0.004 0.008 0.001 0.001 61 Y 0.001 0.001 0.003 0.001 0.002 0.985 0.001 0.001 0.001 0.002 0.006 0.001 0.001 62 F 0.001 0.001 0.002 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 63 K 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 64 R 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.007 0.001 0.001 65 Q 0.001 0.001 0.002 0.001 0.001 0.983 0.001 0.001 0.001 0.002 0.012 0.001 0.001 66 F 0.001 0.001 0.004 0.001 0.002 0.965 0.001 0.001 0.001 0.003 0.026 0.001 0.001 67 G 0.001 0.001 0.012 0.001 0.006 0.937 0.001 0.001 0.001 0.005 0.038 0.001 0.001 68 F 0.001 0.001 0.015 0.001 0.018 0.909 0.001 0.001 0.001 0.009 0.045 0.001 0.001 69 Y 0.001 0.001 0.018 0.001 0.024 0.824 0.001 0.001 0.001 0.020 0.108 0.001 0.002 70 Y 0.001 0.005 0.054 0.001 0.027 0.680 0.001 0.001 0.001 0.047 0.180 0.001 0.003 71 G 0.001 0.011 0.140 0.001 0.045 0.422 0.001 0.001 0.004 0.102 0.264 0.002 0.006 72 E 0.001 0.005 0.187 0.008 0.111 0.194 0.001 0.001 0.006 0.171 0.302 0.005 0.008 73 N 0.001 0.010 0.161 0.007 0.161 0.128 0.001 0.001 0.008 0.203 0.291 0.010 0.020 74 L 0.004 0.025 0.340 0.006 0.111 0.072 0.001 0.001 0.022 0.150 0.191 0.031 0.045 75 C 0.008 0.027 0.502 0.011 0.030 0.032 0.003 0.001 0.037 0.178 0.051 0.033 0.088 76 N 0.009 0.023 0.368 0.011 0.021 0.035 0.005 0.001 0.057 0.197 0.054 0.139 0.080 77 I 0.009 0.051 0.445 0.002 0.023 0.037 0.007 0.001 0.054 0.127 0.065 0.038 0.142 78 S 0.001 0.017 0.875 0.001 0.005 0.009 0.001 0.001 0.022 0.015 0.013 0.018 0.024 79 R 0.001 0.003 0.975 0.001 0.001 0.003 0.001 0.001 0.003 0.003 0.002 0.001 0.009