# List of top-scoring protein chains for T0303.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ah5A 210 5.36e-01 2eyqA 1151 1.02e+00 2avyP 82 2.00e+00 2gk3A 256 2.18e+00 1nviD 81 5.74e+00 d.15.3.1 86241 1fm0D 81 5.78e+00 1fmaD d.15.3.1 37642 1jm7B 117 6.46e+00 g.44.1.1 66881 1ek0A 170 7.09e+00 1ctqA c.37.1.8 32076 2b5wA 357 8.28e+00 1vheA 373 8.36e+00 b.49.3.1,c.56.5.4 100669,100670 2b5vA 357 8.44e+00 2ashA 381 8.55e+00 1kbvA 327 8.89e+00 b.6.1.3,b.6.1.3 68395,68396 1j57A 143 8.93e+00 d.221.1.1 77079 1tltA 319 9.44e+00 c.2.1.3,d.81.1.5 107135,107136 2f2eA 146 1.05e+01 1j3nA 408 1.09e+01 c.95.1.1,c.95.1.1 84074,84075 1sly 618 1.12e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 2b3hA 329 1.17e+01 1a2vA 655 1.18e+01 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1ekmA 656 1.18e+01 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24413,38053,38054 1j9aA 184 1.28e+01 c.55.3.5 84135 1uenA 125 1.36e+01 b.1.2.1 99268 1qsaA 618 1.40e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1o0xA 262 1.40e+01 d.127.1.1 80755 2aorA 223 1.54e+01 1tjyA 316 1.61e+01 c.93.1.1 107062 1miwA 404 1.84e+01 a.173.1.1,d.218.1.4 79162,79163 1ytaA 180 2.06e+01 1ezwA 349 2.26e+01 1ezwA c.1.16.3 29558 1hyp 80 2.28e+01 1hyp a.52.1.1 17806 1wfmA 138 2.61e+01 1x9nA 688 2.62e+01 1a7qH 116 2.62e+01 1gc1H b.1.1.1 19955 2cufA 95 2.64e+01 1huuA 90 3.00e+01 1huuA a.55.1.1 17897 1ujqA 305 3.09e+01 c.1.12.7 99463 2cg5B 91 3.10e+01 1sf8A 126 3.47e+01 d.271.1.1 105472 1xoiA 846 3.57e+01 1fc0A 846 3.57e+01 1a8i c.87.1.4 35473 1l5sA 847 3.58e+01 c.87.1.4 77716 1y6dA 120 3.60e+01 1rduA 116 3.60e+01 c.55.5.1 104890 1mwvA 714 3.65e+01 a.93.1.3,a.93.1.3 85161,85162 1ehdA 89 3.66e+01 1hev g.3.1.1,g.3.1.1 44050,44051 1x7uA 748 3.68e+01 1eisA 89 3.69e+01 1hev g.3.1.1,g.3.1.1 44052,44053 1oaoA 674 3.86e+01 e.26.1.2 86744 1en2A 89 3.90e+01 1hev g.3.1.1,g.3.1.1 44048,44049 1ktbA 405 4.00e+01 b.71.1.1,c.1.8.1 72960,72961 1hnr 47 4.18e+01 1hnr a.155.1.1 17896 1izmA 184 4.83e+01 a.199.1.1 90725 2alyA 266 4.85e+01 1v7rA 186 5.18e+01 c.51.4.1 100482 2a6aA 218 5.18e+01 1yiqA 689 5.32e+01 1kv4A 42 5.45e+01 j.4.1.3 73051 2astB 336 5.52e+01 1b7yA 350 5.54e+01 1pysA d.104.1.1 40776 1t9oA 54 5.88e+01 1oakH 223 5.90e+01 1igtB b.1.1.1,b.1.1.2 20291,21283 1umgA 362 5.93e+01 d.280.1.1 107956 1mioB 458 6.09e+01 1qguB c.92.2.3 35602 1fnsH 225 6.14e+01 1igtB b.1.1.1,b.1.1.2 20289,21281 1dn1A 594 6.18e+01 1dn1A e.25.1.1 43357 1a7oH 116 6.42e+01 1gc1H b.1.1.1 19943 1s67L 119 6.43e+01 d.110.3.2 105303 1a2yB 116 6.44e+01 1gc1H b.1.1.1 19927 1kiqB 116 6.50e+01 1gc1H b.1.1.1 19939 3adk 195 6.58e+01 1zin c.37.1.1 31885 1o06A 20 6.59e+01 j.105.1.1 86524 1jecA 510 6.65e+01 b.122.1.3,c.26.1.5,c.37.1.15 66595,66596,66597 1ydeA 270 6.65e+01 1hxhA 253 6.73e+01 c.2.1.2 76725 1j70A 514 6.74e+01 b.122.1.3,c.26.1.5,c.37.1.15 84118,84119,84120 1d2vA 104 6.83e+01 1d2vA a.93.1.2 18697 1fe8H 210 6.95e+01 1igtB b.1.1.1,b.1.1.2 59786,59787 1dtjA 76 6.98e+01 1dt4A d.51.1.1 38800 2ftmB 58 7.09e+01 1z0nA 96 7.13e+01 1hskA 326 7.15e+01 2mbr d.145.1.2,d.146.1.1 61241,61242 1mhlA 108 7.17e+01 1d2vA a.93.1.2 18699 2gqdA 437 7.25e+01 1g8fA 511 7.29e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2fv7A 331 7.31e+01 1kipB 116 7.36e+01 1gc1H b.1.1.1 19957 1z0xA 220 7.38e+01 1fs2A 272 7.61e+01 1fs1A a.158.1.1,c.10.1.3 19270,30864 1dl7H 112 7.69e+01 1f3rB b.1.1.1 20499 1z83A 196 7.70e+01 1z0mA 96 7.84e+01 1bdyA 123 7.95e+01 1bdyA b.7.1.1 23190 1nffA 260 7.98e+01 c.2.1.2 80457 1xo3A 101 8.03e+01 2tbvA 387 8.05e+01 2tbvA b.121.4.7 23302 1wgkA 114 8.12e+01 2cwcA 303 8.25e+01 1re0B 221 8.29e+01 a.118.3.1 97318 1ec6A 87 8.32e+01 1dt4A d.51.1.1 38804 1p4bH 124 8.36e+01 b.1.1.1 94098 2kinA 238 8.36e+01 1bg2 c.37.1.9 32190 1p4iH 124 8.38e+01 b.1.1.1 94104 1s6cA 183 8.40e+01 a.39.1.5 98594 1sgmA 191 8.45e+01 a.4.1.9,a.121.1.1 105537,105538 1udoA 255 8.50e+01 d.14.1.4,d.101.1.1 99215,99216 1og5A 475 8.59e+01 a.104.1.1 86982 1p22B 145 8.60e+01 a.157.1.1,d.42.1.1 87717,87718 1udsA 255 8.67e+01 d.14.1.4,d.101.1.1 99219,99220 1udnA 255 8.68e+01 d.14.1.4,d.101.1.1 99213,99214 1udqA 255 8.70e+01 d.14.1.4,d.101.1.1 99217,99218 1g2cA 52 8.72e+01 1g2cA h.3.2.1 45767 1szeA 511 8.76e+01 c.1.4.1 106151